myRT

myRT report for GCA_009708335.1_ASM970833v1

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Seq: CP038894.1 Piscirickettsia salmonis strain Psal-006a plasmid unnamed1, complete sequence (188128 bp)
Overview 1 RT 1: 26108-31468 bp 2 RT 2: 76082-79010 bp 3 RT 3: 85393-87918 bp 4 RT 4: 122644-126166 bp Neighborhood of RT #1 [26108, 31782] PHA02517 InsE RVT-GII group_II_RT_mat RVT-GII RVT-GII Y2_Tnp HTH_3 Neighborhood of RT #2 [76082, 79024] Zn_Tnp_IS91 group_II_RT_mat RVT-GII InsE PHA02517 Neighborhood of RT #3 [85393, 87932] Zn_Tnp_IS91 RVT-GII InsE PHA02517 Neighborhood of RT #4 [122644, 126396] PHA02517 InsE RVT-GII Y2_Tnp Feature: gene Location: 26108-26920 bp Ori: QGN96676.1 Feature: domain Description: PHA02517 Location: 26123-26906 bp Feature: domain Description: PHA0251 7 Location: 261 23-26906 bp Feature: gene Location: 26968-27261 bp Ori: QGN96677.1 Feature: domain Description: InsE Location: 26974-27253 bp Feature: domain Description: InsE Location: 26974-27253 bp Feature: gene Location: 27282-27989 bp Ori: QGN96678.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27564-27954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27564-27954 bp Feature: gene Location: 28373-28870 bp Ori: QGN96679.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 28379-28730 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 28379-28730 bp Feature: gene Location: 28867-29331 bp Ori: QGN96680.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28885-29329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28885-29329 bp Feature: gene Location: 29300-29740 bp Ori: QGN96681.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29582-29732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29582-29732 bp Feature: gene Location: 30149-30964 bp Ori: QGN96682.1 Feature: domain Description: Y2_Tnp Location: 30236-30734 bp Feature: domain Description: Y2_Tnp Location: 30236-30734 bp Feature: gene Location: 31318-31782 bp Ori: QGN96683.1 Feature: domain Description: HTH_3 Location: 31327-31468 bp Feature: domain Description: HTH_3 Location: 31 327-31 468 bp Feature: gene Location: 76082-76480 bp Ori: QGN96756.1 Feature: domain Description: Zn_Tnp_IS91 Location: 76094-76325 bp Feature: domain Description: Zn_Tnp_IS91 Location: 76094-76325 bp Feature: gene Location: 76536-77033 bp Ori: QGN96757.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 76542-76893 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 76542-76893 bp Feature: gene Location: 77030-77809 bp Ori: QGN96758.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77219-77807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7721 9-77807 bp Feature: gene Location: 77811-78164 bp Ori: QGN96759.1 Feature: domain Description: InsE Location: 77883-78156 bp Feature: domain Description: InsE Location: 77883-781 56 bp Feature: gene Location: 78212-79024 bp Ori: QGN96760.1 Feature: domain Description: PHA02517 Location: 78227-79010 bp Feature: domain Description: PHA0251 7 Location: 78227-7901 0 bp Feature: gene Location: 85393-85578 bp Feature: gene Location: 85575-86072 bp Ori: QGN96770.1 Feature: domain Description: Zn_Tnp_IS91 Location: 85644-85917 bp Feature: domain Description: Zn_Tnp_IS91 Location: 85644-8591 7 bp Feature: gene Location: 86334-86924 bp Ori: QGN96771.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86337-86745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86337-86745 bp Feature: gene Location: 86987-87280 bp Ori: QGN96772.1 Feature: domain Description: InsE Location: 86993-87272 bp Feature: domain Description: InsE Location: 86993-87272 bp Feature: gene Location: 87363-87932 bp Ori: QGN96773.1 Feature: domain Description: PHA02517 Location: 87378-87918 bp Feature: domain Description: PHA0251 7 Location: 87378-8791 8 bp Feature: gene Location: 122644-123456 bp Ori: QGN96823.1 Feature: domain Description: PHA02517 Location: 122659-123442 bp Feature: domain Description: PHA0251 7 Location: 1 22659-1 23442 bp Feature: gene Location: 123504-123797 bp Ori: QGN96824.1 Feature: domain Description: InsE Location: 123510-123789 bp Feature: domain Description: InsE Location: 1 2351 0-1 23789 bp Feature: gene Location: 123757-124884 bp Ori: QGN96825.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124039-124717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 24039-1 2471 7 bp Feature: gene Location: 125132-125269 bp Feature: gene Location: 125581-126396 bp Ori: QGN96827.1 Feature: domain Description: Y2_Tnp Location: 125668-126166 bp Feature: domain Description: Y2_Tnp Location: 1 25668-1 261 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), Y2_Tnp (pfam04986), HTH_3 (pfam01381), Zn_Tnp_IS91 (pfam14319)

Seq: CP038893.1 Piscirickettsia salmonis strain Psal-006a chromosome, complete genome (3146686 bp)
Overview 1 RT 1: 1114364-1120177 bp 2 RT 2: 1251011-1259719 bp 3 RT 3: 1355671-1360160 bp 4 RT 4: 1881506-1891049 bp 5 RT 5: 2045632-2051763 bp 6 RT 6: 2270235-2272833 bp 7 RT 7: 3122027-3126140 bp Neighborhood of RT #1 [1114364, 1120626] MoxR MDR_like_2 RVT-GII HATPase_c_2 DDE_5 Neighborhood of RT #2 [1251011, 1259757] Y2_Tnp RVT-GII HTH_23 PHA02517 DDE_3 RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #3 [1355671, 1360160] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #4 [1881506, 1891108] VI_chp_5 Rve RVT-GII Y2_Tnp AcrB Neighborhood of RT #5 [2045632, 2051774] InsE PHA02517 RVT-GII DDE_3 HTH_Tnp_IS630 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #6 [2270235, 2272910] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Neighborhood of RT #7 [3122027, 3126370] COG2958 Zn_Tnp_IS91 RVT-GII Y2_Tnp Feature: gene Location: 1114364-1115359 bp Ori: QGN94589.1 Feature: domain Description: MoxR Location: 1114415-1115357 bp Feature: domain Description: MoxR Location: 1114415-1115357 bp Feature: gene Location: 1115567-1116529 bp Ori: QGN94590.1 Feature: domain Description: MDR_like_2 Location: 1115570-1116509 bp Feature: domain Description: MDR_like_2 Location: 1115570-1116509 bp Feature: gene Location: 1117525-1118256 bp Ori: QGN94591.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1117531-1117849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1117531-1117849 bp Feature: gene Location: 1119197-1119517 bp Ori: QGN94592.1 Feature: domain Description: HATPase_c_2 Location: 1119221-1119500 bp Feature: domain Description: HATPase_c_2 Location: 11192 2 1-1119500 bp Feature: gene Location: 1119565-1120626 bp Ori: QGN94593.1 Feature: domain Description: DDE_5 Location: 1119586-1120177 bp Feature: domain Description: DDE_5 Location: 1119586-112 0177 bp Feature: gene Location: 1251011-1251826 bp Ori: QGN94726.1 Feature: domain Description: Y2_Tnp Location: 1251098-1251596 bp Feature: domain Description: Y2 _Tnp Location: 12 51098-12 51596 bp Feature: gene Location: 1252235-1253557 bp Ori: QGN94727.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1252517-1253198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 52 517-12 53198 bp Feature: gene Location: 1253842-1254186 bp Ori: QGN94728.1 Feature: domain Description: HTH_23 Location: 1253860-1253971 bp Feature: domain Description: HTH_2 3 Location: 12 53860-12 53971 bp Feature: gene Location: 1254195-1255007 bp Ori: QGN94729.1 Feature: domain Description: PHA02517 Location: 1254210-1254993 bp Feature: domain Description: PHA02 517 Location: 12 542 10-12 54993 bp Feature: gene Location: 1255527-1255976 bp Ori: QGN94731.1 Feature: domain Description: DDE_3 Location: 1255539-1255899 bp Feature: domain Description: DDE_3 Location: 12 55539-12 55899 bp Feature: gene Location: 1256361-1256663 bp Feature: gene Location: 1256769-1257971 bp Ori: QGN94733.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1256931-1257609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 56931-12 57609 bp Feature: gene Location: 1258073-1258573 bp Ori: QGN94734.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1258145-1258418 bp Feature: domain Description: Zn_Tnp_IS91 Location: 12 58145-12 58418 bp Feature: gene Location: 1259095-1259757 bp Ori: QGN94735.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1259143-1259719 bp Feature: domain Description: beta_CA_cladeB Location: 12 59143-12 59719 bp Feature: gene Location: 1355671-1356207 bp Feature: gene Location: 1356369-1357184 bp Ori: QGN94827.1 Feature: domain Description: Y2_Tnp Location: 1356456-1356957 bp Feature: domain Description: Y2 _Tnp Location: 1356456-1356957 bp Feature: gene Location: 1357593-1358960 bp Ori: QGN94828.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1357875-1358556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1357875-1358556 bp Feature: gene Location: 1359016-1359414 bp Ori: QGN94829.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1359028-1359259 bp Feature: domain Description: Zn_Tnp_IS91 Location: 135902 8-13592 59 bp Feature: gene Location: 1359603-1360160 bp Feature: gene Location: 1881506-1882012 bp Ori: QGN95352.1 Feature: domain Description: VI_chp_5 Location: 1881518-1881986 bp Feature: domain Description: VI_chp_5 Location: 1881518-1881986 bp Feature: gene Location: 1883630-1884274 bp Ori: QGN95353.1 Feature: domain Description: Rve Location: 1883672-1884251 bp Feature: domain Description: Rve Location: 1883672 -18842 51 bp Feature: gene Location: 1885183-1886505 bp Ori: QGN95354.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1885465-1886146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1885465-1886146 bp Feature: gene Location: 1886914-1887729 bp Ori: QGN95355.1 Feature: domain Description: Y2_Tnp Location: 1887001-1887502 bp Feature: domain Description: Y2 _Tnp Location: 1887001-1887502 bp Feature: gene Location: 1888028-1891108 bp Ori: QGN95356.1 Gene: bepE_3 Feature: domain Description: AcrB Location: 1888037-1891049 bp Feature: domain Description: AcrB Location: 1888037-1891049 bp Feature: gene Location: 2045632-2045925 bp Ori: QGN95510.1 Feature: domain Description: InsE Location: 2045638-2045917 bp Feature: domain Description: InsE Location: 2 045638-2 045917 bp Feature: gene Location: 2045973-2046785 bp Ori: QGN95511.1 Feature: domain Description: PHA02517 Location: 2045988-2046771 bp Feature: domain Description: PHA02 517 Location: 2 045988-2 046771 bp Feature: gene Location: 2046794-2047402 bp Ori: QGN95512.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2046995-2047388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 046995-2 047388 bp Feature: gene Location: 2047910-2048359 bp Ori: QGN95513.1 Feature: domain Description: DDE_3 Location: 2047922-2048282 bp Feature: domain Description: DDE_3 Location: 2 04792 2 -2 0482 82 bp Feature: gene Location: 2048431-2048796 bp Ori: QGN95514.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2048446-2048785 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2 048446-2 048785 bp Feature: gene Location: 2049327-2050649 bp Ori: QGN95515.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2049609-2050290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 049609-2 0502 90 bp Feature: gene Location: 2051058-2051387 bp Ori: QGN95516.1 Feature: domain Description: Y2_Tnp Location: 2051145-2051292 bp Feature: domain Description: Y2 _Tnp Location: 2 051145-2 0512 92 bp Feature: gene Location: 2051409-2051774 bp Ori: QGN95517.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2051424-2051763 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2 05142 4-2 051763 bp Feature: gene Location: 2270235-2270762 bp Feature: gene Location: 2270782-2271246 bp Ori: QGN95732.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2270821-2271091 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 2 7082 1-2 2 71091 bp Feature: gene Location: 2271331-2271906 bp Ori: QGN95733.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2271337-2271529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 71337-2 2 7152 9 bp Feature: gene Location: 2272024-2272389 bp Ori: QGN95734.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2272039-2272378 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2 2 72 039-2 2 72 378 bp Feature: gene Location: 2272461-2272910 bp Ori: QGN95735.1 Feature: domain Description: DDE_3 Location: 2272473-2272833 bp Feature: domain Description: DDE_3 Location: 2 2 72 473-2 2 72 833 bp Feature: gene Location: 3122027-3122242 bp Ori: QGN96612.1 Feature: domain Description: COG2958 Location: 3122030-3122237 bp Feature: domain Description: COG2 958 Location: 312 2 030-312 2 2 37 bp Feature: gene Location: 3122641-3123036 bp Ori: QGN96613.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3122728-3122920 bp Feature: domain Description: Zn_Tnp_IS91 Location: 312 2 72 8-312 2 92 0 bp Feature: gene Location: 3123248-3124570 bp Ori: QGN96614.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3123530-3124211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 3530-312 42 11 bp Feature: gene Location: 3125267-3125518 bp Feature: gene Location: 3125663-3126370 bp Ori: QGN96616.1 Feature: domain Description: Y2_Tnp Location: 3125699-3126140 bp Feature: domain Description: Y2 _Tnp Location: 312 5699-312 6140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), MDR_like_2 (cd05289), RVT-GII, HATPase_c_2 (pfam13581), DDE_5 (pfam13546), Y2_Tnp (pfam04986), HTH_23 (pfam13384), PHA02517 (putative transposase OrfB; Reviewed), DDE_3 (pfam13358), Zn_Tnp_IS91 (pfam14319)
beta_CA_cladeB (cd00884), VI_chp_5 (TIGR03358), Rve (COG3316), AcrB (COG0841), InsE (COG2963), HTH_Tnp_IS630 (pfam01710), COG2958 (Uncharacterized protein )