myRT

myRT report for GCA_009708435.1_ASM970843v1

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Seq: CP038909.1 Piscirickettsia salmonis strain Psal-009 plasmid unnamed1, complete sequence (90105 bp)
Overview 1 RT 1: 75900-78753 bp Neighborhood of RT #1 [75900, 78908] PHA02517 InsE RVT-GII group_II_RT_mat Zn_Tnp_IS91 Feature: gene Location: 75900-76643 bp Ori: QGO07675.1 Feature: domain Description: PHA02517 Location: 75912-76629 bp Feature: domain Description: PHA0251 7 Location: 7591 2-76629 bp Feature: gene Location: 76760-77113 bp Ori: QGO07676.1 Feature: domain Description: InsE Location: 76832-77105 bp Feature: domain Description: InsE Location: 76832-771 05 bp Feature: gene Location: 77118-77894 bp Ori: QGO07677.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77304-77892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77304-77892 bp Feature: gene Location: 77891-78388 bp Ori: QGO07678.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 77897-78248 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 77897-78248 bp Feature: gene Location: 78444-78908 bp Ori: QGO07679.1 Feature: domain Description: Zn_Tnp_IS91 Location: 78483-78753 bp Feature: domain Description: Zn_Tnp_IS91 Location: 78483-78753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), Zn_Tnp_IS91 (pfam14319)

Seq: CP038908.1 Piscirickettsia salmonis strain Psal-009 chromosome, complete genome (3337236 bp)
Overview 1 RT 1: 319647-323997 bp 2 RT 2: 357521-362068 bp 3 RT 3: 453358-458718 bp 4 RT 4: 503332-506260 bp 5 RT 5: 1106762-1109437 bp 6 RT 6: 1329023-1335157 bp 7 RT 7: 1489689-1499265 bp 8 RT 8: 2020941-2025430 bp 9 RT 9: 2121344-2129860 bp 10 RT 10: 2260475-2266735 bp 11 RT 11: 3312577-3316690 bp Neighborhood of RT #1 [319647, 324011] Y2_Tnp Zn_Tnp_IS91 RVT-GII InsE PHA02517 Neighborhood of RT #2 [357521, 362109] PHA02517 InsE RVT-GII Y2_Tnp Phage_integrase Neighborhood of RT #3 [453358, 459032] PHA02517 InsE RVT-GII group_II_RT_mat RVT-GII RVT-GII Y2_Tnp HTH_3 Neighborhood of RT #4 [503332, 506274] Zn_Tnp_IS91 group_II_RT_mat RVT-GII InsE PHA02517 Neighborhood of RT #5 [1106762, 1109437] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #6 [1329023, 1335165] HTH_Tnp_IS630 Y2_Tnp RVT-GII HTH_Tnp_IS630 DDE_3 RVT-GII PHA02517 InsE Neighborhood of RT #7 [1489689, 1499291] AcrB Y2_Tnp RVT-GII Rve VI_chp_5 Neighborhood of RT #8 [2020941, 2025430] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #9 [2121344, 2130090] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII DDE_3 PHA02517 HTH_23 RVT-GII Y2_Tnp Neighborhood of RT #10 [2260475, 2266737] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #11 [3312577, 3316920] COG2958 Zn_Tnp_IS91 RVT-GII Y2_Tnp Feature: gene Location: 319647-320672 bp Ori: QGO04462.1 Feature: domain Description: Y2_Tnp Location: 319902-320442 bp Feature: domain Description: Y2 _Tnp Location: 319902 -32 0442 bp Feature: gene Location: 321408-321908 bp Ori: QGO04463.1 Feature: domain Description: Zn_Tnp_IS91 Location: 321480-321753 bp Feature: domain Description: Zn_Tnp_IS91 Location: 32 1480-32 1753 bp Feature: gene Location: 322170-322760 bp Ori: QGO04464.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322173-322581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 2 173-32 2 581 bp Feature: gene Location: 322823-323116 bp Ori: QGO04465.1 Feature: domain Description: InsE Location: 322829-323108 bp Feature: domain Description: InsE Location: 32 2 82 9-32 3108 bp Feature: gene Location: 323199-324011 bp Ori: QGO04466.1 Feature: domain Description: PHA02517 Location: 323214-323997 bp Feature: domain Description: PHA02 517 Location: 32 32 14-32 3997 bp Feature: gene Location: 357521-358333 bp Ori: QGO04510.1 Feature: domain Description: PHA02517 Location: 357536-358319 bp Feature: domain Description: PHA02 517 Location: 357536-358319 bp Feature: gene Location: 358381-358674 bp Ori: QGO04511.1 Feature: domain Description: InsE Location: 358387-358666 bp Feature: domain Description: InsE Location: 358387-358666 bp Feature: gene Location: 358634-359761 bp Ori: QGO04512.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358916-359594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358916-359594 bp Feature: gene Location: 360458-361273 bp Ori: QGO04513.1 Feature: domain Description: Y2_Tnp Location: 360545-361043 bp Feature: domain Description: Y2 _Tnp Location: 360545-361043 bp Feature: gene Location: 361519-362109 bp Ori: QGO04514.1 Feature: domain Description: Phage_integrase Location: 361546-362068 bp Feature: domain Description: Phage_integrase Location: 361546-362 068 bp Feature: gene Location: 453358-454170 bp Ori: QGO04624.1 Feature: domain Description: PHA02517 Location: 453373-454156 bp Feature: domain Description: PHA02 517 Location: 453373-454156 bp Feature: gene Location: 454218-454511 bp Ori: QGO04625.1 Feature: domain Description: InsE Location: 454224-454503 bp Feature: domain Description: InsE Location: 4542 2 4-454503 bp Feature: gene Location: 454532-455239 bp Ori: QGO04626.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454814-455204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454814-4552 04 bp Feature: gene Location: 455623-456120 bp Ori: QGO04627.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 455629-455980 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 45562 9-455980 bp Feature: gene Location: 456117-456581 bp Ori: QGO04628.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456135-456579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456135-456579 bp Feature: gene Location: 456550-456990 bp Ori: QGO04629.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456832-456982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 456832 -456982 bp Feature: gene Location: 457399-458214 bp Ori: QGO04630.1 Feature: domain Description: Y2_Tnp Location: 457486-457984 bp Feature: domain Description: Y2 _Tnp Location: 457486-457984 bp Feature: gene Location: 458568-459032 bp Ori: QGO04631.1 Feature: domain Description: HTH_3 Location: 458577-458718 bp Feature: domain Description: HTH_3 Location: 458577-458718 bp Feature: gene Location: 503332-503730 bp Ori: QGO04701.1 Feature: domain Description: Zn_Tnp_IS91 Location: 503344-503575 bp Feature: domain Description: Zn_Tnp_IS91 Location: 503344-503575 bp Feature: gene Location: 503786-504283 bp Ori: QGO04702.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 503792-504143 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 503792 -504143 bp Feature: gene Location: 504280-505056 bp Ori: QGO04703.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504466-505054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504466-505054 bp Feature: gene Location: 505061-505414 bp Ori: QGO04704.1 Feature: domain Description: InsE Location: 505133-505406 bp Feature: domain Description: InsE Location: 505133-505406 bp Feature: gene Location: 505462-506274 bp Ori: QGO04705.1 Feature: domain Description: PHA02517 Location: 505477-506260 bp Feature: domain Description: PHA02 517 Location: 505477-5062 60 bp Feature: gene Location: 1106762-1107211 bp Ori: QGO05314.1 Feature: domain Description: DDE_3 Location: 1106774-1107134 bp Feature: domain Description: DDE_3 Location: 1106774-1107134 bp Feature: gene Location: 1107283-1107648 bp Ori: QGO05315.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1107298-1107637 bp Feature: domain Description: HTH_Tnp_IS630 Location: 11072 98-1107637 bp Feature: gene Location: 1107766-1108341 bp Ori: QGO05316.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1107772-1107964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1107772 -1107964 bp Feature: gene Location: 1108426-1108824 bp Ori: QGO05317.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1108438-1108669 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1108438-1108669 bp Feature: gene Location: 1108910-1109437 bp Feature: gene Location: 1329023-1329388 bp Ori: QGO05534.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1329038-1329377 bp Feature: domain Description: HTH_Tnp_IS630 Location: 132 9038-132 9377 bp Feature: gene Location: 1329410-1329739 bp Ori: QGO05535.1 Feature: domain Description: Y2_Tnp Location: 1329497-1329644 bp Feature: domain Description: Y2 _Tnp Location: 132 9497-132 9644 bp Feature: gene Location: 1330148-1331470 bp Ori: QGO05536.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1330430-1331111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1330430-1331111 bp Feature: gene Location: 1332001-1332366 bp Ori: QGO05537.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1332016-1332355 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1332 016-1332 355 bp Feature: gene Location: 1332438-1332887 bp Ori: QGO05538.1 Feature: domain Description: DDE_3 Location: 1332450-1332810 bp Feature: domain Description: DDE_3 Location: 1332 450-1332 810 bp Feature: gene Location: 1333395-1334003 bp Ori: QGO05539.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1333596-1333989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1333596-1333989 bp Feature: gene Location: 1334012-1334824 bp Ori: QGO05540.1 Feature: domain Description: PHA02517 Location: 1334027-1334810 bp Feature: domain Description: PHA02 517 Location: 133402 7-1334810 bp Feature: gene Location: 1334872-1335165 bp Ori: QGO05541.1 Feature: domain Description: InsE Location: 1334878-1335157 bp Feature: domain Description: InsE Location: 1334878-1335157 bp Feature: gene Location: 1489689-1492769 bp Ori: QGO05695.1 Gene: bepE_3 Feature: domain Description: AcrB Location: 1489698-1492710 bp Feature: domain Description: AcrB Location: 1489698-1492 710 bp Feature: gene Location: 1493068-1493883 bp Ori: QGO05696.1 Feature: domain Description: Y2_Tnp Location: 1493155-1493656 bp Feature: domain Description: Y2 _Tnp Location: 1493155-1493656 bp Feature: gene Location: 1494292-1495614 bp Ori: QGO05697.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1494574-1495255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1494574-14952 55 bp Feature: gene Location: 1496523-1497167 bp Ori: QGO05698.1 Feature: domain Description: Rve Location: 1496565-1497144 bp Feature: domain Description: Rve Location: 1496565-1497144 bp Feature: gene Location: 1498785-1499291 bp Ori: QGO05699.1 Feature: domain Description: VI_chp_5 Location: 1498797-1499265 bp Feature: domain Description: VI_chp_5 Location: 1498797-14992 65 bp Feature: gene Location: 2020941-2021498 bp Feature: gene Location: 2021687-2022085 bp Ori: QGO06220.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2021699-2021930 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 02 1699-2 02 1930 bp Feature: gene Location: 2022141-2023508 bp Ori: QGO06221.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2022423-2023104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 2 42 3-2 02 3104 bp Feature: gene Location: 2023917-2024732 bp Ori: QGO06222.1 Feature: domain Description: Y2_Tnp Location: 2024004-2024505 bp Feature: domain Description: Y2 _Tnp Location: 2 02 4004-2 02 4505 bp Feature: gene Location: 2024894-2025430 bp Feature: gene Location: 2121344-2122006 bp Ori: QGO06314.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 2121392-2121968 bp Feature: domain Description: beta_CA_cladeB Location: 2 12 1392 -2 12 1968 bp Feature: gene Location: 2122528-2123028 bp Ori: QGO06315.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2122600-2122873 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 12 2 600-2 12 2 873 bp Feature: gene Location: 2123130-2124332 bp Ori: QGO06316.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2123292-2123970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 32 92 -2 12 3970 bp Feature: gene Location: 2124438-2124740 bp Feature: gene Location: 2125125-2125574 bp Ori: QGO06318.1 Feature: domain Description: DDE_3 Location: 2125137-2125497 bp Feature: domain Description: DDE_3 Location: 2 12 5137-2 12 5497 bp Feature: gene Location: 2126094-2126906 bp Ori: QGO06320.1 Feature: domain Description: PHA02517 Location: 2126109-2126892 bp Feature: domain Description: PHA02 517 Location: 2 12 6109-2 12 6892 bp Feature: gene Location: 2126915-2127259 bp Ori: QGO06321.1 Feature: domain Description: HTH_23 Location: 2126933-2127044 bp Feature: domain Description: HTH_2 3 Location: 2 12 6933-2 12 7044 bp Feature: gene Location: 2127544-2128866 bp Ori: QGO06322.1 Gene: ltrA_11 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2127826-2128507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 782 6-2 12 8507 bp Feature: gene Location: 2129275-2130090 bp Ori: QGO06323.1 Feature: domain Description: Y2_Tnp Location: 2129362-2129860 bp Feature: domain Description: Y2 _Tnp Location: 2 12 9362 -2 12 9860 bp Feature: gene Location: 2260475-2261536 bp Ori: QGO06457.1 Feature: domain Description: DDE_5 Location: 2260496-2261087 bp Feature: domain Description: DDE_5 Location: 2 2 60496-2 2 61087 bp Feature: gene Location: 2261584-2261904 bp Ori: QGO06458.1 Feature: domain Description: HATPase_c_2 Location: 2261608-2261887 bp Feature: domain Description: HATPase_c_2 Location: 2 2 61608-2 2 61887 bp Feature: gene Location: 2262845-2263576 bp Ori: QGO06459.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2262851-2263169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 62 851-2 2 63169 bp Feature: gene Location: 2264572-2265534 bp Ori: QGO06460.1 Feature: domain Description: MDR_like_2 Location: 2264575-2265514 bp Feature: domain Description: MDR_like_2 Location: 2 2 64575-2 2 65514 bp Feature: gene Location: 2265742-2266737 bp Ori: QGO06461.1 Feature: domain Description: MoxR Location: 2265793-2266735 bp Feature: domain Description: MoxR Location: 2 2 65793-2 2 66735 bp Feature: gene Location: 3312577-3312792 bp Ori: QGO07554.1 Feature: domain Description: COG2958 Location: 3312580-3312787 bp Feature: domain Description: COG2 958 Location: 3312 580-3312 787 bp Feature: gene Location: 3313191-3313586 bp Ori: QGO07555.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3313278-3313470 bp Feature: domain Description: Zn_Tnp_IS91 Location: 33132 78-3313470 bp Feature: gene Location: 3313798-3315120 bp Ori: QGO07556.1 Gene: ltrA_12 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3314080-3314761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3314080-3314761 bp Feature: gene Location: 3315817-3316068 bp Feature: gene Location: 3316213-3316920 bp Ori: QGO07558.1 Feature: domain Description: Y2_Tnp Location: 3316249-3316690 bp Feature: domain Description: Y2 _Tnp Location: 33162 49-3316690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y2_Tnp (pfam04986), Zn_Tnp_IS91 (pfam14319), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Phage_integrase (pfam00589), group_II_RT_mat (TIGR04416), HTH_3 (pfam01381), DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710)
AcrB (COG0841), Rve (COG3316), VI_chp_5 (TIGR03358), beta_CA_cladeB (cd00884), HTH_23 (pfam13384), DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), COG2958 (Uncharacterized protein )