myRT

myRT report for GCA_009708695.1_ASM970869v1

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Seq: CP038914.1 Piscirickettsia salmonis strain Psal-010a plasmid unnamed1, complete sequence (108847 bp)
Overview 1 RT 1: 32882-36779 bp 2 RT 2: 102367-107841 bp Neighborhood of RT #1 [32882, 37093] PHA02517 InsE RVT-GII Y2_Tnp HTH_3 Neighborhood of RT #2 [102367, 107882] Zn_Tnp_IS91 PHA02517 RVT-GII InsE Y2_Tnp Phage_integrase Feature: gene Location: 32882-33694 bp Ori: QGO11095.1 Feature: domain Description: PHA02517 Location: 32897-33680 bp Feature: domain Description: PHA0251 7 Location: 32897-33680 bp Feature: gene Location: 33742-34035 bp Ori: QGO11096.1 Feature: domain Description: InsE Location: 33748-34027 bp Feature: domain Description: InsE Location: 33748-34027 bp Feature: gene Location: 34056-34763 bp Ori: QGO11097.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34338-34728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34338-34728 bp Feature: gene Location: 35172-35696 bp Ori: QGO11098.1 Feature: domain Description: Y2_Tnp Location: 35259-35655 bp Feature: domain Description: Y2_Tnp Location: 35259-35655 bp Feature: gene Location: 36629-37093 bp Ori: QGO11099.1 Feature: domain Description: HTH_3 Location: 36638-36779 bp Feature: domain Description: HTH_3 Location: 36638-36779 bp Feature: gene Location: 102367-102867 bp Ori: QGO11193.1 Feature: domain Description: Zn_Tnp_IS91 Location: 102439-102712 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 02439-1 0271 2 bp Feature: gene Location: 103295-104107 bp Ori: QGO11194.1 Feature: domain Description: PHA02517 Location: 103310-104093 bp Feature: domain Description: PHA0251 7 Location: 1 0331 0-1 04093 bp Feature: gene Location: 104155-105534 bp Ori: QGO11195.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104437-105115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 04437-1 051 1 5 bp Feature: domain Description: InsE Location: 105253-105526 bp Feature: domain Description: InsE Location: 1 05253-1 05526 bp Feature: gene Location: 106231-107046 bp Ori: QGO11196.1 Feature: domain Description: Y2_Tnp Location: 106318-106816 bp Feature: domain Description: Y2_Tnp Location: 1 0631 8-1 0681 6 bp Feature: gene Location: 107292-107882 bp Ori: QGO11197.1 Feature: domain Description: Phage_integrase Location: 107319-107841 bp Feature: domain Description: Phage_integrase Location: 1 0731 9-1 07841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, Y2_Tnp (pfam04986), HTH_3 (pfam01381), Zn_Tnp_IS91 (pfam14319), Phage_integrase (pfam00589)

Seq: CP038913.1 Piscirickettsia salmonis strain Psal-010a chromosome, complete genome (3149273 bp)
Overview 1 RT 1: 1363481-1367494 bp 2 RT 2: 1521054-1525408 bp 3 RT 3: 1882686-1887181 bp 4 RT 4: 1998216-2002706 bp 5 RT 5: 2170383-2174484 bp 6 RT 6: 2306824-2312807 bp 7 RT 7: 2401369-2403966 bp 8 RT 8: 3123658-3127776 bp Neighborhood of RT #1 [1363481, 1367649] HTH_Tnp_IS630 Y2_Tnp RVT-GII PHA02517 Zn_Tnp_IS91 Neighborhood of RT #2 [1521054, 1525408] HTH_Tnp_IS630 Y2_Tnp RVT-GII InsE PHA02517 RVT-GII HTH_Tnp_1 Neighborhood of RT #3 [1882686, 1887219] HTH_Tnp_1 HTH_21 Tra5 RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #4 [1998216, 2002706] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #5 [2170383, 2174714] HTH_21 Tra5 HTH_Tnp_1 RVT-GII Y2_Tnp Neighborhood of RT #6 [2306824, 2312809] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #7 [2401369, 2404043] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Neighborhood of RT #8 [3123658, 3127787] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 1363481-1363846 bp Ori: QGO09245.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1363496-1363835 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1363496-1363835 bp Feature: gene Location: 1363868-1364197 bp Ori: QGO09246.1 Feature: domain Description: Y2_Tnp Location: 1363955-1364102 bp Feature: domain Description: Y2 _Tnp Location: 1363955-1364102 bp Feature: gene Location: 1364606-1365166 bp Ori: QGO09247.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1364888-1365137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1364888-1365137 bp Feature: gene Location: 1365592-1366404 bp Ori: QGO09248.1 Feature: domain Description: PHA02517 Location: 1365607-1366390 bp Feature: domain Description: PHA02 517 Location: 1365607-1366390 bp Feature: gene Location: 1367239-1367649 bp Ori: QGO09249.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1367260-1367494 bp Feature: domain Description: Zn_Tnp_IS91 Location: 13672 60-1367494 bp Feature: gene Location: 1521054-1521419 bp Ori: QGO09405.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1521069-1521408 bp Feature: domain Description: HTH_Tnp_IS630 Location: 152 1069-152 1408 bp Feature: gene Location: 1521441-1521938 bp Ori: QGO09406.1 Feature: domain Description: Y2_Tnp Location: 1521528-1521900 bp Feature: domain Description: Y2 _Tnp Location: 152 152 8-152 1900 bp Feature: gene Location: 1522428-1522952 bp Ori: QGO09407.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1522629-1522857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 2 62 9-152 2 857 bp Feature: gene Location: 1522912-1523205 bp Ori: QGO09408.1 Feature: domain Description: InsE Location: 1522918-1523197 bp Feature: domain Description: InsE Location: 152 2 918-152 3197 bp Feature: gene Location: 1523253-1524065 bp Ori: QGO09409.1 Feature: domain Description: PHA02517 Location: 1523268-1524051 bp Feature: domain Description: PHA02 517 Location: 152 32 68-152 4051 bp Feature: gene Location: 1524143-1524760 bp Ori: QGO09410.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1524146-1524557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 4146-152 4557 bp Feature: gene Location: 1524797-1525222 bp Ori: QGO09411.1 Feature: domain Description: HTH_Tnp_1 Location: 1524902-1525133 bp Feature: domain Description: HTH_Tnp_1 Location: 152 4902 -152 5133 bp Feature: gene Location: 1525292-1525408 bp Feature: gene Location: 1882686-1882958 bp Ori: QGO09778.1 Feature: domain Description: HTH_Tnp_1 Location: 1882695-1882899 bp Feature: domain Description: HTH_Tnp_1 Location: 1882 695-1882 899 bp Feature: gene Location: 1882970-1883806 bp Ori: QGO09779.1 Feature: domain Description: HTH_21 Location: 1883093-1883246 bp Feature: domain Description: HTH_2 1 Location: 1883093-18832 46 bp Feature: domain Description: Tra5 Location: 1883294-1883774 bp Feature: domain Description: Tra5 Location: 18832 94-1883774 bp Feature: gene Location: 1884231-1885433 bp Ori: QGO09780.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1884393-1885074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1884393-1885074 bp Feature: gene Location: 1885535-1886035 bp Ori: QGO09781.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1885607-1885880 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1885607-1885880 bp Feature: gene Location: 1886557-1887219 bp Ori: QGO09782.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1886605-1887181 bp Feature: domain Description: beta_CA_cladeB Location: 1886605-1887181 bp Feature: gene Location: 1998216-1998752 bp Feature: gene Location: 1998914-1999729 bp Ori: QGO09891.1 Feature: domain Description: Y2_Tnp Location: 1999001-1999502 bp Feature: domain Description: Y2 _Tnp Location: 1999001-1999502 bp Feature: gene Location: 2000138-2001460 bp Ori: QGO09892.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2000420-2001101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 00042 0-2 001101 bp Feature: gene Location: 2001562-2001960 bp Ori: QGO09893.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2001574-2001805 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 001574-2 001805 bp Feature: gene Location: 2002149-2002706 bp Feature: gene Location: 2170383-2171219 bp Ori: QGO10056.1 Feature: domain Description: HTH_21 Location: 2170506-2170659 bp Feature: domain Description: HTH_2 1 Location: 2 170506-2 170659 bp Feature: domain Description: Tra5 Location: 2170707-2171187 bp Feature: domain Description: Tra5 Location: 2 170707-2 171187 bp Feature: gene Location: 2171231-2171503 bp Ori: QGO10057.1 Feature: domain Description: HTH_Tnp_1 Location: 2171240-2171444 bp Feature: domain Description: HTH_Tnp_1 Location: 2 1712 40-2 171444 bp Feature: gene Location: 2172532-2173518 bp Ori: QGO10058.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2172814-2173492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 172 814-2 173492 bp Feature: gene Location: 2173899-2174714 bp Ori: QGO10059.1 Feature: domain Description: Y2_Tnp Location: 2173986-2174484 bp Feature: domain Description: Y2 _Tnp Location: 2 173986-2 174484 bp Feature: gene Location: 2306824-2307885 bp Ori: QGO10189.1 Feature: domain Description: DDE_5 Location: 2306845-2307436 bp Feature: domain Description: DDE_5 Location: 2 306845-2 307436 bp Feature: gene Location: 2307933-2308253 bp Ori: QGO10190.1 Feature: domain Description: HATPase_c_2 Location: 2307957-2308236 bp Feature: domain Description: HATPase_c_2 Location: 2 307957-2 3082 36 bp Feature: gene Location: 2309223-2309924 bp Ori: QGO10191.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2309229-2309547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3092 2 9-2 309547 bp Feature: gene Location: 2310632-2311594 bp Ori: QGO10192.1 Feature: domain Description: MDR_like_2 Location: 2310635-2311574 bp Feature: domain Description: MDR_like_2 Location: 2 310635-2 311574 bp Feature: gene Location: 2311814-2312809 bp Ori: QGO10193.1 Feature: domain Description: MoxR Location: 2311865-2312807 bp Feature: domain Description: MoxR Location: 2 311865-2 312 807 bp Feature: gene Location: 2401369-2401896 bp Feature: gene Location: 2401982-2402380 bp Ori: QGO10283.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2401994-2402225 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 401994-2 402 2 2 5 bp Feature: gene Location: 2402482-2403039 bp Ori: QGO10284.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2402488-2402680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 402 488-2 402 680 bp Feature: gene Location: 2403157-2403522 bp Ori: QGO10285.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2403172-2403511 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2 403172 -2 403511 bp Feature: gene Location: 2403594-2404043 bp Ori: QGO10286.1 Feature: domain Description: DDE_3 Location: 2403606-2403966 bp Feature: domain Description: DDE_3 Location: 2 403606-2 403966 bp Feature: gene Location: 3123658-3123873 bp Ori: QGO11024.1 Feature: domain Description: COG2958 Location: 3123661-3123868 bp Feature: domain Description: COG2 958 Location: 312 3661-312 3868 bp Feature: gene Location: 3124272-3124667 bp Ori: QGO11025.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3124359-3124551 bp Feature: domain Description: Zn_Tnp_IS91 Location: 312 4359-312 4551 bp Feature: gene Location: 3124879-3126198 bp Ori: QGO11026.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3125161-3125839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 5161-312 5839 bp Feature: gene Location: 3126895-3127146 bp Feature: gene Location: 3127422-3127787 bp Ori: QGO11028.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3127437-3127776 bp Feature: domain Description: HTH_Tnp_IS630 Location: 312 7437-312 7776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), Y2_Tnp (pfam04986), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), Zn_Tnp_IS91 (pfam14319), InsE (COG2963), HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884)
DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), DDE_3 (pfam13358), COG2958 (Uncharacterized protein )