myRT

myRT report for GCA_009708735.1_ASM970873v1

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Seq: CP038924.1 Piscirickettsia salmonis strain Psal-011 plasmid unnamed1, complete sequence (158304 bp)
Overview 1 RT 1: 88568-91480 bp 2 RT 2: 134507-138704 bp 3 RT 3: 149484-157298 bp Neighborhood of RT #1 [88568, 91494] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #2 [134507, 138718] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [149484, 157339] Zn_Tnp_IS91 PHA02517 RVT-GII InsE HTH_21 Tra5 HTH_Tnp_1 Tra8 RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 88568-89017 bp Ori: QGO18146.1 Feature: domain Description: DDE_3 Location: 88580-88940 bp Feature: domain Description: DDE_3 Location: 88580-88940 bp Feature: gene Location: 89089-89454 bp Ori: QGO18147.1 Feature: domain Description: HTH_Tnp_IS630 Location: 89104-89443 bp Feature: domain Description: HTH_Tnp_IS630 Location: 891 04-89443 bp Feature: gene Location: 89554-90570 bp Ori: QGO18148.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89557-90211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89557-9021 1 bp Feature: gene Location: 90672-91070 bp Ori: QGO18149.1 Feature: domain Description: Zn_Tnp_IS91 Location: 90684-90915 bp Feature: domain Description: Zn_Tnp_IS91 Location: 90684-9091 5 bp Feature: gene Location: 91156-91494 bp Ori: QGO18150.1 Feature: domain Description: major_cap_HK97 Location: 91219-91480 bp Feature: domain Description: major_cap_HK97 Location: 91 21 9-91 480 bp Feature: gene Location: 134507-134971 bp Ori: QGO18220.1 Feature: domain Description: HTH_3 Location: 134516-134657 bp Feature: domain Description: HTH_3 Location: 1 3451 6-1 34657 bp Feature: gene Location: 135904-136428 bp Ori: QGO18221.1 Feature: domain Description: Y2_Tnp Location: 135991-136387 bp Feature: domain Description: Y2_Tnp Location: 1 35991 -1 36387 bp Feature: gene Location: 136837-137544 bp Ori: QGO18222.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137119-137509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 371 1 9-1 37509 bp Feature: gene Location: 137565-137858 bp Ori: QGO18223.1 Feature: domain Description: InsE Location: 137571-137850 bp Feature: domain Description: InsE Location: 1 37571 -1 37850 bp Feature: gene Location: 137906-138718 bp Ori: QGO18224.1 Feature: domain Description: PHA02517 Location: 137921-138704 bp Feature: domain Description: PHA0251 7 Location: 1 37921 -1 38704 bp Feature: gene Location: 149484-149984 bp Ori: QGO18243.1 Feature: domain Description: Zn_Tnp_IS91 Location: 149556-149829 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 49556-1 49829 bp Feature: gene Location: 150412-151224 bp Ori: QGO18244.1 Feature: domain Description: PHA02517 Location: 150427-151210 bp Feature: domain Description: PHA0251 7 Location: 1 50427-1 51 21 0 bp Feature: gene Location: 151272-152012 bp Ori: QGO18245.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151278-151593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 278-1 51 593 bp Feature: domain Description: InsE Location: 151731-152004 bp Feature: domain Description: InsE Location: 1 51 731 -1 52004 bp Feature: gene Location: 152335-153171 bp Ori: QGO18246.1 Feature: domain Description: HTH_21 Location: 152458-152611 bp Feature: domain Description: HTH_21 Location: 1 52458-1 5261 1 bp Feature: domain Description: Tra5 Location: 152659-153139 bp Feature: domain Description: Tra5 Location: 1 52659-1 531 39 bp Feature: gene Location: 153183-153455 bp Ori: QGO18247.1 Feature: domain Description: HTH_Tnp_1 Location: 153192-153396 bp Feature: domain Description: HTH_Tnp_1 Location: 1 531 92-1 53396 bp Feature: gene Location: 153506-154315 bp Ori: QGO18248.1 Feature: domain Description: Tra8 Location: 153509-154292 bp Feature: domain Description: Tra8 Location: 1 53509-1 54292 bp Feature: gene Location: 154374-154991 bp Ori: QGO18249.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154656-154965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 54656-1 54965 bp Feature: gene Location: 155688-156503 bp Ori: QGO18250.1 Feature: domain Description: Y2_Tnp Location: 155775-156273 bp Feature: domain Description: Y2_Tnp Location: 1 55775-1 56273 bp Feature: gene Location: 156749-157339 bp Ori: QGO18251.1 Feature: domain Description: Phage_integrase Location: 156776-157298 bp Feature: domain Description: Phage_integrase Location: 1 56776-1 57298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HTH_21 (pfam13276)
Tra5 (COG2801), HTH_Tnp_1 (pfam01527), Tra8 (COG2826), Phage_integrase (pfam00589)

Seq: CP038923.1 Piscirickettsia salmonis strain Psal-011 chromosome, complete genome (3152175 bp)
Overview 1 RT 1: 913842-916516 bp 2 RT 2: 1005087-1010623 bp 3 RT 3: 1143182-1150888 bp 4 RT 4: 1261933-1266423 bp 5 RT 5: 1792716-1797059 bp 6 RT 6: 1950475-1954632 bp 7 RT 7: 3126560-3130678 bp Neighborhood of RT #1 [913842, 916516] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1005087, 1011072] MoxR MDR_like_2 RVT-GII HATPase_c_2 DDE_5 Neighborhood of RT #3 [1143182, 1150926] Y2_Tnp RVT-GII HTH_Tnp_1 HTH_21 Tra5 RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #4 [1261933, 1266423] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #5 [1792716, 1797070] HTH_Tnp_1 RVT-GII PHA02517 InsE RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #6 [1950475, 1954643] Zn_Tnp_IS91 PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #7 [3126560, 3130689] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 913842-914291 bp Ori: QGO15755.1 Feature: domain Description: DDE_3 Location: 913854-914214 bp Feature: domain Description: DDE_3 Location: 913854-9142 14 bp Feature: gene Location: 914363-914728 bp Ori: QGO15756.1 Feature: domain Description: HTH_Tnp_IS630 Location: 914378-914717 bp Feature: domain Description: HTH_Tnp_IS630 Location: 914378-914717 bp Feature: gene Location: 914846-915403 bp Ori: QGO15757.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914852-915044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 914852 -915044 bp Feature: gene Location: 915505-915903 bp Ori: QGO15758.1 Feature: domain Description: Zn_Tnp_IS91 Location: 915517-915748 bp Feature: domain Description: Zn_Tnp_IS91 Location: 915517-915748 bp Feature: gene Location: 915989-916516 bp Feature: gene Location: 1005087-1006082 bp Ori: QGO15848.1 Feature: domain Description: MoxR Location: 1005138-1006080 bp Feature: domain Description: MoxR Location: 1005138-1006080 bp Feature: gene Location: 1006302-1007264 bp Ori: QGO15849.1 Feature: domain Description: MDR_like_2 Location: 1006305-1007244 bp Feature: domain Description: MDR_like_2 Location: 1006305-10072 44 bp Feature: gene Location: 1007972-1008673 bp Ori: QGO15850.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007978-1008296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007978-10082 96 bp Feature: gene Location: 1009643-1009963 bp Ori: QGO15851.1 Feature: domain Description: HATPase_c_2 Location: 1009667-1009946 bp Feature: domain Description: HATPase_c_2 Location: 1009667-1009946 bp Feature: gene Location: 1010011-1011072 bp Ori: QGO15852.1 Feature: domain Description: DDE_5 Location: 1010032-1010623 bp Feature: domain Description: DDE_5 Location: 1010032 -101062 3 bp Feature: gene Location: 1143182-1143997 bp Ori: QGO15981.1 Feature: domain Description: Y2_Tnp Location: 1143269-1143767 bp Feature: domain Description: Y2 _Tnp Location: 11432 69-1143767 bp Feature: gene Location: 1144378-1145364 bp Ori: QGO15982.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1144660-1145338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1144660-1145338 bp Feature: gene Location: 1146393-1146665 bp Ori: QGO15983.1 Feature: domain Description: HTH_Tnp_1 Location: 1146402-1146606 bp Feature: domain Description: HTH_Tnp_1 Location: 1146402 -1146606 bp Feature: gene Location: 1146677-1147513 bp Ori: QGO15984.1 Feature: domain Description: HTH_21 Location: 1146800-1146953 bp Feature: domain Description: HTH_2 1 Location: 1146800-1146953 bp Feature: domain Description: Tra5 Location: 1147001-1147481 bp Feature: domain Description: Tra5 Location: 1147001-1147481 bp Feature: gene Location: 1147938-1149140 bp Ori: QGO15985.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1148100-1148781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1148100-1148781 bp Feature: gene Location: 1149242-1149742 bp Ori: QGO15986.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1149314-1149587 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1149314-1149587 bp Feature: gene Location: 1150264-1150926 bp Ori: QGO15987.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1150312-1150888 bp Feature: domain Description: beta_CA_cladeB Location: 1150312 -1150888 bp Feature: gene Location: 1261933-1262469 bp Feature: gene Location: 1262631-1263446 bp Ori: QGO16093.1 Feature: domain Description: Y2_Tnp Location: 1262718-1263219 bp Feature: domain Description: Y2 _Tnp Location: 12 62 718-12 632 19 bp Feature: gene Location: 1263855-1265177 bp Ori: QGO16094.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1264137-1264818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 64137-12 64818 bp Feature: gene Location: 1265279-1265677 bp Ori: QGO16095.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1265291-1265522 bp Feature: domain Description: Zn_Tnp_IS91 Location: 12 652 91-12 6552 2 bp Feature: gene Location: 1265866-1266423 bp Feature: gene Location: 1792716-1792832 bp Feature: gene Location: 1792902-1793327 bp Ori: QGO16628.1 Feature: domain Description: HTH_Tnp_1 Location: 1793007-1793238 bp Feature: domain Description: HTH_Tnp_1 Location: 1793007-17932 38 bp Feature: gene Location: 1793364-1793981 bp Ori: QGO16629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1793367-1793778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1793367-1793778 bp Feature: gene Location: 1794059-1794871 bp Ori: QGO16630.1 Feature: domain Description: PHA02517 Location: 1794074-1794857 bp Feature: domain Description: PHA02 517 Location: 1794074-1794857 bp Feature: gene Location: 1794919-1795212 bp Ori: QGO16631.1 Feature: domain Description: InsE Location: 1794925-1795204 bp Feature: domain Description: InsE Location: 179492 5-17952 04 bp Feature: gene Location: 1795172-1795696 bp Ori: QGO16632.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1795373-1795601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1795373-1795601 bp Feature: gene Location: 1796186-1796683 bp Ori: QGO16633.1 Feature: domain Description: Y2_Tnp Location: 1796273-1796645 bp Feature: domain Description: Y2 _Tnp Location: 17962 73-1796645 bp Feature: gene Location: 1796705-1797070 bp Ori: QGO16634.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1796720-1797059 bp Feature: domain Description: HTH_Tnp_IS630 Location: 179672 0-1797059 bp Feature: gene Location: 1950475-1950885 bp Ori: QGO16792.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1950496-1950730 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1950496-1950730 bp Feature: gene Location: 1951720-1952532 bp Ori: QGO16793.1 Feature: domain Description: PHA02517 Location: 1951735-1952518 bp Feature: domain Description: PHA02 517 Location: 1951735-1952 518 bp Feature: gene Location: 1952958-1953518 bp Ori: QGO16794.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1953240-1953489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19532 40-1953489 bp Feature: gene Location: 1953927-1954256 bp Ori: QGO16795.1 Feature: domain Description: Y2_Tnp Location: 1954014-1954161 bp Feature: domain Description: Y2 _Tnp Location: 1954014-1954161 bp Feature: gene Location: 1954278-1954643 bp Ori: QGO16796.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1954293-1954632 bp Feature: domain Description: HTH_Tnp_IS630 Location: 19542 93-1954632 bp Feature: gene Location: 3126560-3126775 bp Ori: QGO18004.1 Feature: domain Description: COG2958 Location: 3126563-3126770 bp Feature: domain Description: COG2 958 Location: 312 6563-312 6770 bp Feature: gene Location: 3127174-3127569 bp Ori: QGO18005.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3127261-3127453 bp Feature: domain Description: Zn_Tnp_IS91 Location: 312 72 61-312 7453 bp Feature: gene Location: 3127781-3129100 bp Ori: QGO18006.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3128063-3128741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 8063-312 8741 bp Feature: gene Location: 3129797-3130048 bp Feature: gene Location: 3130324-3130689 bp Ori: QGO18008.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3130339-3130678 bp Feature: domain Description: HTH_Tnp_IS630 Location: 3130339-3130678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), MoxR (COG0714), MDR_like_2 (cd05289), HATPase_c_2 (pfam13581), DDE_5 (pfam13546), Y2_Tnp (pfam04986), HTH_Tnp_1 (pfam01527)
HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), COG2958 (Uncharacterized protein )