myRT

myRT report for GCA_009708775.1_ASM970877v1

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Seq: CP038937.1 Piscirickettsia salmonis strain Psal-026 chromosome, complete genome (3141916 bp)
Overview 1 RT 1: 1367357-1371369 bp 2 RT 2: 1524929-1529283 bp 3 RT 3: 1886561-1891056 bp 4 RT 4: 1988388-1992878 bp 5 RT 5: 2160555-2164656 bp 6 RT 6: 2296996-2302979 bp 7 RT 7: 2391540-2394137 bp 8 RT 8: 3116301-3120419 bp Neighborhood of RT #1 [1367357, 1371524] HTH_Tnp_IS630 Y2_Tnp RVT-GII PHA02517 Zn_Tnp_IS91 Neighborhood of RT #2 [1524929, 1529283] HTH_Tnp_IS630 Y2_Tnp RVT-GII InsE PHA02517 RVT-GII HTH_Tnp_1 Neighborhood of RT #3 [1886561, 1891094] HTH_Tnp_1 HTH_21 Tra5 RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #4 [1988388, 1992878] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #5 [2160555, 2164886] HTH_21 Tra5 HTH_Tnp_1 RVT-GII Y2_Tnp Neighborhood of RT #6 [2296996, 2302981] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #7 [2391540, 2394214] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Neighborhood of RT #8 [3116301, 3120430] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 1367357-1367722 bp Ori: QGO26960.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1367372-1367711 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 367372-1 36771 1 bp Feature: gene Location: 1367744-1368073 bp Ori: QGO26961.1 Feature: domain Description: Y2_Tnp Location: 1367831-1367978 bp Feature: domain Description: Y2_Tnp Location: 1 367831 -1 367978 bp Feature: gene Location: 1368482-1369042 bp Ori: QGO26962.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1368764-1369013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 368764-1 36901 3 bp Feature: gene Location: 1369468-1370280 bp Ori: QGO26963.1 Feature: domain Description: PHA02517 Location: 1369483-1370266 bp Feature: domain Description: PHA0251 7 Location: 1 369483-1 370266 bp Feature: gene Location: 1371114-1371524 bp Ori: QGO26964.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1371135-1371369 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 371 1 35-1 371 369 bp Feature: gene Location: 1524929-1525294 bp Ori: QGO27120.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1524944-1525283 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 524944-1 525283 bp Feature: gene Location: 1525316-1525813 bp Ori: QGO27121.1 Feature: domain Description: Y2_Tnp Location: 1525403-1525775 bp Feature: domain Description: Y2_Tnp Location: 1 525403-1 525775 bp Feature: gene Location: 1526303-1526827 bp Ori: QGO27122.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1526504-1526732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 526504-1 526732 bp Feature: gene Location: 1526787-1527080 bp Ori: QGO27123.1 Feature: domain Description: InsE Location: 1526793-1527072 bp Feature: domain Description: InsE Location: 1 526793-1 527072 bp Feature: gene Location: 1527128-1527940 bp Ori: QGO27124.1 Feature: domain Description: PHA02517 Location: 1527143-1527926 bp Feature: domain Description: PHA0251 7 Location: 1 5271 43-1 527926 bp Feature: gene Location: 1528018-1528635 bp Ori: QGO27125.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1528021-1528432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 528021 -1 528432 bp Feature: gene Location: 1528672-1529097 bp Ori: QGO27126.1 Feature: domain Description: HTH_Tnp_1 Location: 1528777-1529008 bp Feature: domain Description: HTH_Tnp_1 Location: 1 528777-1 529008 bp Feature: gene Location: 1529167-1529283 bp Feature: gene Location: 1886561-1886833 bp Ori: QGO27494.1 Feature: domain Description: HTH_Tnp_1 Location: 1886570-1886774 bp Feature: domain Description: HTH_Tnp_1 Location: 1 886570-1 886774 bp Feature: gene Location: 1886845-1887681 bp Ori: QGO27495.1 Feature: domain Description: HTH_21 Location: 1886968-1887121 bp Feature: domain Description: HTH_21 Location: 1 886968-1 8871 21 bp Feature: domain Description: Tra5 Location: 1887169-1887649 bp Feature: domain Description: Tra5 Location: 1 8871 69-1 887649 bp Feature: gene Location: 1888106-1889308 bp Ori: QGO27496.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1888268-1888949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 888268-1 888949 bp Feature: gene Location: 1889410-1889910 bp Ori: QGO27497.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1889482-1889755 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 889482-1 889755 bp Feature: gene Location: 1890432-1891094 bp Ori: QGO27498.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1890480-1891056 bp Feature: domain Description: beta_CA_cladeB Location: 1 890480-1 891 056 bp Feature: gene Location: 1988388-1988924 bp Feature: gene Location: 1989086-1989901 bp Ori: QGO27594.1 Feature: domain Description: Y2_Tnp Location: 1989173-1989674 bp Feature: domain Description: Y2_Tnp Location: 1 9891 73-1 989674 bp Feature: gene Location: 1990310-1991632 bp Ori: QGO27595.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1990592-1991273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 990592-1 991 273 bp Feature: gene Location: 1991734-1992132 bp Ori: QGO27596.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1991746-1991977 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 991 746-1 991 977 bp Feature: gene Location: 1992321-1992878 bp Feature: gene Location: 2160555-2161391 bp Ori: QGO27759.1 Feature: domain Description: HTH_21 Location: 2160678-2160831 bp Feature: domain Description: HTH_21 Location: 21 60678-21 60831 bp Feature: domain Description: Tra5 Location: 2160879-2161359 bp Feature: domain Description: Tra5 Location: 21 60879-21 61 359 bp Feature: gene Location: 2161403-2161675 bp Ori: QGO27760.1 Feature: domain Description: HTH_Tnp_1 Location: 2161412-2161616 bp Feature: domain Description: HTH_Tnp_1 Location: 21 61 41 2-21 61 61 6 bp Feature: gene Location: 2162704-2163690 bp Ori: QGO27761.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2162986-2163664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 62986-21 63664 bp Feature: gene Location: 2164071-2164886 bp Ori: QGO27762.1 Feature: domain Description: Y2_Tnp Location: 2164158-2164656 bp Feature: domain Description: Y2_Tnp Location: 21 641 58-21 64656 bp Feature: gene Location: 2296996-2298057 bp Ori: QGO27893.1 Feature: domain Description: DDE_5 Location: 2297017-2297608 bp Feature: domain Description: DDE_5 Location: 229701 7-2297608 bp Feature: gene Location: 2298105-2298425 bp Ori: QGO27894.1 Feature: domain Description: HATPase_c_2 Location: 2298129-2298408 bp Feature: domain Description: HATPase_c_2 Location: 22981 29-2298408 bp Feature: gene Location: 2299395-2300096 bp Ori: QGO27895.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2299401-2299719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2299401 -229971 9 bp Feature: gene Location: 2300804-2301766 bp Ori: QGO27896.1 Feature: domain Description: MDR_like_2 Location: 2300807-2301746 bp Feature: domain Description: MDR_like_2 Location: 2300807-2301 746 bp Feature: gene Location: 2301986-2302981 bp Ori: QGO27897.1 Feature: domain Description: MoxR Location: 2302037-2302979 bp Feature: domain Description: MoxR Location: 2302037-2302979 bp Feature: gene Location: 2391540-2392067 bp Feature: gene Location: 2392153-2392551 bp Ori: QGO27987.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2392165-2392396 bp Feature: domain Description: Zn_Tnp_IS91 Location: 23921 65-2392396 bp Feature: gene Location: 2392653-2393210 bp Ori: QGO27988.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2392659-2392851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2392659-2392851 bp Feature: gene Location: 2393328-2393693 bp Ori: QGO27989.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2393343-2393682 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2393343-2393682 bp Feature: gene Location: 2393765-2394214 bp Ori: QGO27990.1 Feature: domain Description: DDE_3 Location: 2393777-2394137 bp Feature: domain Description: DDE_3 Location: 2393777-23941 37 bp Feature: gene Location: 3116301-3116516 bp Ori: QGO28733.1 Feature: domain Description: COG2958 Location: 3116304-3116511 bp Feature: domain Description: COG2958 Location: 31 1 6304-31 1 651 1 bp Feature: gene Location: 3116915-3117310 bp Ori: QGO28734.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3117002-3117194 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31 1 7002-31 1 71 94 bp Feature: gene Location: 3117522-3118841 bp Ori: QGO28735.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3117804-3118482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 7804-31 1 8482 bp Feature: gene Location: 3119538-3119789 bp Feature: gene Location: 3120065-3120430 bp Ori: QGO28737.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3120080-3120419 bp Feature: domain Description: HTH_Tnp_IS630 Location: 31 20080-31 2041 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), Y2_Tnp (pfam04986), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), Zn_Tnp_IS91 (pfam14319), InsE (COG2963), HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884)
DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), DDE_3 (pfam13358), COG2958 (Uncharacterized protein )

Seq: CP038938.1 Piscirickettsia salmonis strain Psal-026 plasmid unnamed1, complete sequence (110308 bp)
Overview 1 RT 1: 88851-93048 bp 2 RT 2: 103828-109302 bp Neighborhood of RT #1 [88851, 93062] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #2 [103828, 109343] Zn_Tnp_IS91 PHA02517 RVT-GII InsE Y2_Tnp Phage_integrase Feature: gene Location: 88851-89315 bp Ori: QGO28881.1 Feature: domain Description: HTH_3 Location: 88860-89001 bp Feature: domain Description: HTH_3 Location: 88860-89001 bp Feature: gene Location: 90248-90772 bp Ori: QGO28882.1 Feature: domain Description: Y2_Tnp Location: 90335-90731 bp Feature: domain Description: Y2 _Tnp Location: 90335-90731 bp Feature: gene Location: 91181-91888 bp Ori: QGO28883.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91463-91853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91463-91853 bp Feature: gene Location: 91909-92202 bp Ori: QGO28884.1 Feature: domain Description: InsE Location: 91915-92194 bp Feature: domain Description: InsE Location: 91915-92 194 bp Feature: gene Location: 92250-93062 bp Ori: QGO28885.1 Feature: domain Description: PHA02517 Location: 92265-93048 bp Feature: domain Description: PHA02 517 Location: 92 2 65-93048 bp Feature: gene Location: 103828-104328 bp Ori: QGO28904.1 Feature: domain Description: Zn_Tnp_IS91 Location: 103900-104173 bp Feature: domain Description: Zn_Tnp_IS91 Location: 103900-104173 bp Feature: gene Location: 104756-105568 bp Ori: QGO28905.1 Feature: domain Description: PHA02517 Location: 104771-105554 bp Feature: domain Description: PHA02 517 Location: 104771-105554 bp Feature: gene Location: 105616-106995 bp Ori: QGO28906.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105898-106576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105898-106576 bp Feature: domain Description: InsE Location: 106714-106987 bp Feature: domain Description: InsE Location: 106714-106987 bp Feature: gene Location: 107692-108507 bp Ori: QGO28907.1 Feature: domain Description: Y2_Tnp Location: 107779-108277 bp Feature: domain Description: Y2 _Tnp Location: 107779-1082 77 bp Feature: gene Location: 108753-109343 bp Ori: QGO28908.1 Feature: domain Description: Phage_integrase Location: 108780-109302 bp Feature: domain Description: Phage_integrase Location: 108780-109302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), Y2_Tnp (pfam04986), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Zn_Tnp_IS91 (pfam14319), Phage_integrase (pfam00589)