myRT

myRT report for GCA_009708795.1_ASM970879v1

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Seq: CP038943.1 Piscirickettsia salmonis strain Psal-027 plasmid unnamed1, complete sequence (153781 bp)
Overview 1 RT 1: 68482-71394 bp 2 RT 2: 114421-118618 bp 3 RT 3: 129398-134872 bp Neighborhood of RT #1 [68482, 71408] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #2 [114421, 118632] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [129398, 134913] Zn_Tnp_IS91 PHA02517 RVT-GII InsE Y2_Tnp Phage_integrase Feature: gene Location: 68482-68931 bp Ori: QGO32403.1 Feature: domain Description: DDE_3 Location: 68494-68854 bp Feature: domain Description: DDE_3 Location: 68494-68854 bp Feature: gene Location: 69003-69368 bp Ori: QGO32404.1 Feature: domain Description: HTH_Tnp_IS630 Location: 69018-69357 bp Feature: domain Description: HTH_Tnp_IS630 Location: 6901 8-69357 bp Feature: gene Location: 69468-70484 bp Ori: QGO32405.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69471-70125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69471 -701 25 bp Feature: gene Location: 70586-70984 bp Ori: QGO32406.1 Feature: domain Description: Zn_Tnp_IS91 Location: 70598-70829 bp Feature: domain Description: Zn_Tnp_IS91 Location: 70598-70829 bp Feature: gene Location: 71070-71408 bp Ori: QGO32407.1 Feature: domain Description: major_cap_HK97 Location: 71133-71394 bp Feature: domain Description: major_cap_HK97 Location: 71 1 33-71 394 bp Feature: gene Location: 114421-114885 bp Ori: QGO32477.1 Feature: domain Description: HTH_3 Location: 114430-114571 bp Feature: domain Description: HTH_3 Location: 1 1 4430-1 1 4571 bp Feature: gene Location: 115818-116342 bp Ori: QGO32478.1 Feature: domain Description: Y2_Tnp Location: 115905-116301 bp Feature: domain Description: Y2_Tnp Location: 1 1 5905-1 1 6301 bp Feature: gene Location: 116751-117458 bp Ori: QGO32479.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117033-117423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 7033-1 1 7423 bp Feature: gene Location: 117479-117772 bp Ori: QGO32480.1 Feature: domain Description: InsE Location: 117485-117764 bp Feature: domain Description: InsE Location: 1 1 7485-1 1 7764 bp Feature: gene Location: 117820-118632 bp Ori: QGO32481.1 Feature: domain Description: PHA02517 Location: 117835-118618 bp Feature: domain Description: PHA0251 7 Location: 1 1 7835-1 1 861 8 bp Feature: gene Location: 129398-129898 bp Ori: QGO32500.1 Feature: domain Description: Zn_Tnp_IS91 Location: 129470-129743 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 29470-1 29743 bp Feature: gene Location: 130326-131138 bp Ori: QGO32501.1 Feature: domain Description: PHA02517 Location: 130341-131124 bp Feature: domain Description: PHA0251 7 Location: 1 30341 -1 31 1 24 bp Feature: gene Location: 131186-132565 bp Ori: QGO32502.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131468-132146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 468-1 321 46 bp Feature: domain Description: InsE Location: 132284-132557 bp Feature: domain Description: InsE Location: 1 32284-1 32557 bp Feature: gene Location: 133262-134077 bp Ori: QGO32503.1 Feature: domain Description: Y2_Tnp Location: 133349-133847 bp Feature: domain Description: Y2_Tnp Location: 1 33349-1 33847 bp Feature: gene Location: 134323-134913 bp Ori: QGO32504.1 Feature: domain Description: Phage_integrase Location: 134350-134872 bp Feature: domain Description: Phage_integrase Location: 1 34350-1 34872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Phage_integrase (pfam00589)

Seq: CP038942.1 Piscirickettsia salmonis strain Psal-027 chromosome, complete genome (3160466 bp)
Overview 1 RT 1: 919159-921833 bp 2 RT 2: 1010393-1015929 bp 3 RT 3: 1148488-1152787 bp 4 RT 4: 1320496-1324986 bp 5 RT 5: 1422280-1426754 bp 6 RT 6: 1785325-1789668 bp 7 RT 7: 1943084-1947241 bp 8 RT 8: 3134851-3138969 bp Neighborhood of RT #1 [919159, 921833] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1010393, 1016378] MoxR MDR_like_2 RVT-GII HATPase_c_2 DDE_5 Neighborhood of RT #3 [1148488, 1152819] Y2_Tnp RVT-GII HTH_Tnp_1 HTH_21 Tra5 Neighborhood of RT #4 [1320496, 1324986] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #5 [1422280, 1426813] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII HTH_21 Tra5 HTH_Tnp_1 Neighborhood of RT #6 [1785325, 1789679] HTH_Tnp_1 RVT-GII PHA02517 InsE RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #7 [1943084, 1947252] Zn_Tnp_IS91 PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #8 [3134851, 3138980] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 919159-919608 bp Ori: QGO30026.1 Feature: domain Description: DDE_3 Location: 919171-919531 bp Feature: domain Description: DDE_3 Location: 919171-919531 bp Feature: gene Location: 919680-920045 bp Ori: QGO30027.1 Feature: domain Description: HTH_Tnp_IS630 Location: 919695-920034 bp Feature: domain Description: HTH_Tnp_IS630 Location: 919695-92 0034 bp Feature: gene Location: 920163-920720 bp Ori: QGO30028.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 920169-920361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 0169-92 0361 bp Feature: gene Location: 920822-921220 bp Ori: QGO30029.1 Feature: domain Description: Zn_Tnp_IS91 Location: 920834-921065 bp Feature: domain Description: Zn_Tnp_IS91 Location: 92 0834-92 1065 bp Feature: gene Location: 921306-921833 bp Feature: gene Location: 1010393-1011388 bp Ori: QGO30119.1 Feature: domain Description: MoxR Location: 1010444-1011386 bp Feature: domain Description: MoxR Location: 1010444-1011386 bp Feature: gene Location: 1011608-1012570 bp Ori: QGO30120.1 Feature: domain Description: MDR_like_2 Location: 1011611-1012550 bp Feature: domain Description: MDR_like_2 Location: 1011611-1012 550 bp Feature: gene Location: 1013278-1013979 bp Ori: QGO30121.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1013284-1013602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10132 84-1013602 bp Feature: gene Location: 1014949-1015269 bp Ori: QGO30122.1 Feature: domain Description: HATPase_c_2 Location: 1014973-1015252 bp Feature: domain Description: HATPase_c_2 Location: 1014973-10152 52 bp Feature: gene Location: 1015317-1016378 bp Ori: QGO30123.1 Feature: domain Description: DDE_5 Location: 1015338-1015929 bp Feature: domain Description: DDE_5 Location: 1015338-101592 9 bp Feature: gene Location: 1148488-1149303 bp Ori: QGO30252.1 Feature: domain Description: Y2_Tnp Location: 1148575-1149073 bp Feature: domain Description: Y2 _Tnp Location: 1148575-1149073 bp Feature: gene Location: 1149684-1150670 bp Ori: QGO30253.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1149966-1150644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1149966-1150644 bp Feature: gene Location: 1151699-1151971 bp Ori: QGO30254.1 Feature: domain Description: HTH_Tnp_1 Location: 1151708-1151912 bp Feature: domain Description: HTH_Tnp_1 Location: 1151708-1151912 bp Feature: gene Location: 1151983-1152819 bp Ori: QGO30255.1 Feature: domain Description: HTH_21 Location: 1152106-1152259 bp Feature: domain Description: HTH_2 1 Location: 1152 106-1152 2 59 bp Feature: domain Description: Tra5 Location: 1152307-1152787 bp Feature: domain Description: Tra5 Location: 1152 307-1152 787 bp Feature: gene Location: 1320496-1321053 bp Feature: gene Location: 1321242-1321640 bp Ori: QGO30418.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1321254-1321485 bp Feature: domain Description: Zn_Tnp_IS91 Location: 132 12 54-132 1485 bp Feature: gene Location: 1321742-1323064 bp Ori: QGO30419.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1322024-1322705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 2 02 4-132 2 705 bp Feature: gene Location: 1323473-1324288 bp Ori: QGO30420.1 Feature: domain Description: Y2_Tnp Location: 1323560-1324061 bp Feature: domain Description: Y2 _Tnp Location: 132 3560-132 4061 bp Feature: gene Location: 1324450-1324986 bp Feature: gene Location: 1422280-1422942 bp Ori: QGO30516.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1422328-1422904 bp Feature: domain Description: beta_CA_cladeB Location: 142 2 32 8-142 2 904 bp Feature: gene Location: 1423464-1423964 bp Ori: QGO30517.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1423536-1423809 bp Feature: domain Description: Zn_Tnp_IS91 Location: 142 3536-142 3809 bp Feature: gene Location: 1424066-1425268 bp Ori: QGO30518.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424228-1424909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 42 2 8-142 4909 bp Feature: gene Location: 1425693-1426529 bp Ori: QGO30519.1 Feature: domain Description: HTH_21 Location: 1425816-1425969 bp Feature: domain Description: HTH_2 1 Location: 142 5816-142 5969 bp Feature: domain Description: Tra5 Location: 1426017-1426497 bp Feature: domain Description: Tra5 Location: 142 6017-142 6497 bp Feature: gene Location: 1426541-1426813 bp Ori: QGO30520.1 Feature: domain Description: HTH_Tnp_1 Location: 1426550-1426754 bp Feature: domain Description: HTH_Tnp_1 Location: 142 6550-142 6754 bp Feature: gene Location: 1785325-1785441 bp Feature: gene Location: 1785511-1785936 bp Ori: QGO30890.1 Feature: domain Description: HTH_Tnp_1 Location: 1785616-1785847 bp Feature: domain Description: HTH_Tnp_1 Location: 1785616-1785847 bp Feature: gene Location: 1785973-1786590 bp Ori: QGO30891.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1785976-1786387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1785976-1786387 bp Feature: gene Location: 1786668-1787480 bp Ori: QGO30892.1 Feature: domain Description: PHA02517 Location: 1786683-1787466 bp Feature: domain Description: PHA02 517 Location: 1786683-1787466 bp Feature: gene Location: 1787528-1787821 bp Ori: QGO30893.1 Feature: domain Description: InsE Location: 1787534-1787813 bp Feature: domain Description: InsE Location: 1787534-1787813 bp Feature: gene Location: 1787781-1788305 bp Ori: QGO30894.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1787982-1788210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1787982 -17882 10 bp Feature: gene Location: 1788795-1789292 bp Ori: QGO30895.1 Feature: domain Description: Y2_Tnp Location: 1788882-1789254 bp Feature: domain Description: Y2 _Tnp Location: 1788882 -17892 54 bp Feature: gene Location: 1789314-1789679 bp Ori: QGO30896.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1789329-1789668 bp Feature: domain Description: HTH_Tnp_IS630 Location: 178932 9-1789668 bp Feature: gene Location: 1943084-1943494 bp Ori: QGO31054.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1943105-1943339 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1943105-1943339 bp Feature: gene Location: 1944329-1945141 bp Ori: QGO31055.1 Feature: domain Description: PHA02517 Location: 1944344-1945127 bp Feature: domain Description: PHA02 517 Location: 1944344-194512 7 bp Feature: gene Location: 1945567-1946127 bp Ori: QGO31056.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1945849-1946098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1945849-1946098 bp Feature: gene Location: 1946536-1946865 bp Ori: QGO31057.1 Feature: domain Description: Y2_Tnp Location: 1946623-1946770 bp Feature: domain Description: Y2 _Tnp Location: 194662 3-1946770 bp Feature: gene Location: 1946887-1947252 bp Ori: QGO31058.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1946902-1947241 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1946902 -19472 41 bp Feature: gene Location: 3134851-3135066 bp Ori: QGO32286.1 Feature: domain Description: COG2958 Location: 3134854-3135061 bp Feature: domain Description: COG2 958 Location: 3134854-3135061 bp Feature: gene Location: 3135465-3135860 bp Ori: QGO32287.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3135552-3135744 bp Feature: domain Description: Zn_Tnp_IS91 Location: 3135552 -3135744 bp Feature: gene Location: 3136072-3137391 bp Ori: QGO32288.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3136354-3137032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3136354-3137032 bp Feature: gene Location: 3138088-3138339 bp Feature: gene Location: 3138615-3138980 bp Ori: QGO32290.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3138630-3138969 bp Feature: domain Description: HTH_Tnp_IS630 Location: 3138630-3138969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), MoxR (COG0714), MDR_like_2 (cd05289), HATPase_c_2 (pfam13581), DDE_5 (pfam13546), Y2_Tnp (pfam04986), HTH_Tnp_1 (pfam01527)
HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), COG2958 (Uncharacterized protein )