myRT

myRT report for GCA_009708815.1_ASM970881v1

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Seq: CP038948.1 Piscirickettsia salmonis strain Psal-028 plasmid unnamed1, complete sequence (189008 bp)
Overview 1 RT 1: 87889-93249 bp 2 RT 2: 137863-140791 bp 3 RT 3: 145592-149942 bp 4 RT 4: 183466-188013 bp Neighborhood of RT #1 [87889, 93563] PHA02517 InsE RVT-GII group_II_RT_mat RVT-GII RVT-GII Y2_Tnp HTH_3 Neighborhood of RT #2 [137863, 140805] Zn_Tnp_IS91 group_II_RT_mat RVT-GII InsE PHA02517 Neighborhood of RT #3 [145592, 149956] Y2_Tnp Zn_Tnp_IS91 RVT-GII InsE PHA02517 Neighborhood of RT #4 [183466, 188054] PHA02517 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 87889-88701 bp Ori: QGO36014.1 Feature: domain Description: PHA02517 Location: 87904-88687 bp Feature: domain Description: PHA0251 7 Location: 87904-88687 bp Feature: gene Location: 88749-89042 bp Ori: QGO36015.1 Feature: domain Description: InsE Location: 88755-89034 bp Feature: domain Description: InsE Location: 88755-89034 bp Feature: gene Location: 89063-89770 bp Ori: QGO36016.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89345-89735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89345-89735 bp Feature: gene Location: 90154-90651 bp Ori: QGO36017.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 90160-90511 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 901 60-9051 1 bp Feature: gene Location: 90648-91112 bp Ori: QGO36018.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90666-91110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90666-91 1 1 0 bp Feature: gene Location: 91081-91521 bp Ori: QGO36019.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91363-91513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 363-91 51 3 bp Feature: gene Location: 91930-92745 bp Ori: QGO36020.1 Feature: domain Description: Y2_Tnp Location: 92017-92515 bp Feature: domain Description: Y2_Tnp Location: 9201 7-9251 5 bp Feature: gene Location: 93099-93563 bp Ori: QGO36021.1 Feature: domain Description: HTH_3 Location: 93108-93249 bp Feature: domain Description: HTH_3 Location: 931 08-93249 bp Feature: gene Location: 137863-138261 bp Ori: QGO36093.1 Feature: domain Description: Zn_Tnp_IS91 Location: 137875-138106 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 37875-1 381 06 bp Feature: gene Location: 138317-138814 bp Ori: QGO36094.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 138323-138674 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 38323-1 38674 bp Feature: gene Location: 138811-139587 bp Ori: QGO36095.1 Gene: ltrA_11 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138997-139585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 38997-1 39585 bp Feature: gene Location: 139592-139945 bp Ori: QGO36096.1 Feature: domain Description: InsE Location: 139664-139937 bp Feature: domain Description: InsE Location: 1 39664-1 39937 bp Feature: gene Location: 139993-140805 bp Ori: QGO36097.1 Feature: domain Description: PHA02517 Location: 140008-140791 bp Feature: domain Description: PHA0251 7 Location: 1 40008-1 40791 bp Feature: gene Location: 145592-146617 bp Ori: QGO36103.1 Feature: domain Description: Y2_Tnp Location: 145847-146387 bp Feature: domain Description: Y2_Tnp Location: 1 45847-1 46387 bp Feature: gene Location: 147353-147853 bp Ori: QGO36104.1 Feature: domain Description: Zn_Tnp_IS91 Location: 147425-147698 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 47425-1 47698 bp Feature: gene Location: 148115-148705 bp Ori: QGO36105.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148118-148526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 481 1 8-1 48526 bp Feature: gene Location: 148768-149061 bp Ori: QGO36106.1 Feature: domain Description: InsE Location: 148774-149053 bp Feature: domain Description: InsE Location: 1 48774-1 49053 bp Feature: gene Location: 149144-149956 bp Ori: QGO36107.1 Feature: domain Description: PHA02517 Location: 149159-149942 bp Feature: domain Description: PHA0251 7 Location: 1 491 59-1 49942 bp Feature: gene Location: 183466-184278 bp Ori: QGO36151.1 Feature: domain Description: PHA02517 Location: 183481-184264 bp Feature: domain Description: PHA0251 7 Location: 1 83481 -1 84264 bp Feature: gene Location: 184326-184619 bp Ori: QGO36152.1 Feature: domain Description: InsE Location: 184332-184611 bp Feature: domain Description: InsE Location: 1 84332-1 8461 1 bp Feature: gene Location: 184579-185706 bp Ori: QGO36153.1 Gene: ltrA_12 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184861-185539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 84861 -1 85539 bp Feature: gene Location: 186403-187218 bp Ori: QGO36154.1 Feature: domain Description: Y2_Tnp Location: 186490-186988 bp Feature: domain Description: Y2_Tnp Location: 1 86490-1 86988 bp Feature: gene Location: 187464-188054 bp Ori: QGO36155.1 Feature: domain Description: Phage_integrase Location: 187491-188013 bp Feature: domain Description: Phage_integrase Location: 1 87491 -1 8801 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), Y2_Tnp (pfam04986), HTH_3 (pfam01381), Zn_Tnp_IS91 (pfam14319), Phage_integrase (pfam00589)

Seq: CP038947.1 Piscirickettsia salmonis strain Psal-028 chromosome, complete genome (3146909 bp)
Overview 1 RT 1: 915853-918528 bp 2 RT 2: 1138114-1144248 bp 3 RT 3: 1298780-1308356 bp 4 RT 4: 1830327-1834816 bp 5 RT 5: 1930730-1939246 bp 6 RT 6: 2069861-2076121 bp 7 RT 7: 3122250-3126363 bp Neighborhood of RT #1 [915853, 918528] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1138114, 1144256] HTH_Tnp_IS630 Y2_Tnp RVT-GII HTH_Tnp_IS630 DDE_3 RVT-GII PHA02517 InsE Neighborhood of RT #3 [1298780, 1308382] AcrB Y2_Tnp RVT-GII Rve VI_chp_5 Neighborhood of RT #4 [1830327, 1834816] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #5 [1930730, 1939476] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII DDE_3 PHA02517 HTH_23 RVT-GII Y2_Tnp Neighborhood of RT #6 [2069861, 2076123] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #7 [3122250, 3126593] COG2958 Zn_Tnp_IS91 RVT-GII Y2_Tnp Feature: gene Location: 915853-916302 bp Ori: QGO33635.1 Feature: domain Description: DDE_3 Location: 915865-916225 bp Feature: domain Description: DDE_3 Location: 915865-9162 2 5 bp Feature: gene Location: 916374-916739 bp Ori: QGO33636.1 Feature: domain Description: HTH_Tnp_IS630 Location: 916389-916728 bp Feature: domain Description: HTH_Tnp_IS630 Location: 916389-91672 8 bp Feature: gene Location: 916857-917432 bp Ori: QGO33637.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916863-917055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916863-917055 bp Feature: gene Location: 917517-917915 bp Ori: QGO33638.1 Feature: domain Description: Zn_Tnp_IS91 Location: 917529-917760 bp Feature: domain Description: Zn_Tnp_IS91 Location: 91752 9-917760 bp Feature: gene Location: 918001-918528 bp Feature: gene Location: 1138114-1138479 bp Ori: QGO33855.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1138129-1138468 bp Feature: domain Description: HTH_Tnp_IS630 Location: 113812 9-1138468 bp Feature: gene Location: 1138501-1138830 bp Ori: QGO33856.1 Feature: domain Description: Y2_Tnp Location: 1138588-1138735 bp Feature: domain Description: Y2 _Tnp Location: 1138588-1138735 bp Feature: gene Location: 1139239-1140561 bp Ori: QGO33857.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1139521-1140202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113952 1-11402 02 bp Feature: gene Location: 1141092-1141457 bp Ori: QGO33858.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1141107-1141446 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1141107-1141446 bp Feature: gene Location: 1141529-1141978 bp Ori: QGO33859.1 Feature: domain Description: DDE_3 Location: 1141541-1141901 bp Feature: domain Description: DDE_3 Location: 1141541-1141901 bp Feature: gene Location: 1142486-1143094 bp Ori: QGO33860.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1142687-1143080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1142 687-1143080 bp Feature: gene Location: 1143103-1143915 bp Ori: QGO33861.1 Feature: domain Description: PHA02517 Location: 1143118-1143901 bp Feature: domain Description: PHA02 517 Location: 1143118-1143901 bp Feature: gene Location: 1143963-1144256 bp Ori: QGO33862.1 Feature: domain Description: InsE Location: 1143969-1144248 bp Feature: domain Description: InsE Location: 1143969-11442 48 bp Feature: gene Location: 1298780-1301860 bp Ori: QGO34016.1 Gene: bepE_3 Feature: domain Description: AcrB Location: 1298789-1301801 bp Feature: domain Description: AcrB Location: 12 98789-1301801 bp Feature: gene Location: 1302159-1302974 bp Ori: QGO34017.1 Feature: domain Description: Y2_Tnp Location: 1302246-1302747 bp Feature: domain Description: Y2 _Tnp Location: 1302 2 46-1302 747 bp Feature: gene Location: 1303383-1304705 bp Ori: QGO34018.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1303665-1304346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1303665-1304346 bp Feature: gene Location: 1305614-1306258 bp Ori: QGO34019.1 Feature: domain Description: Rve Location: 1305656-1306235 bp Feature: domain Description: Rve Location: 1305656-13062 35 bp Feature: gene Location: 1307876-1308382 bp Ori: QGO34020.1 Feature: domain Description: VI_chp_5 Location: 1307888-1308356 bp Feature: domain Description: VI_chp_5 Location: 1307888-1308356 bp Feature: gene Location: 1830327-1830884 bp Feature: gene Location: 1831073-1831471 bp Ori: QGO34546.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1831085-1831316 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1831085-1831316 bp Feature: gene Location: 1831527-1832894 bp Ori: QGO34547.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1831809-1832490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1831809-1832 490 bp Feature: gene Location: 1833303-1834118 bp Ori: QGO34548.1 Feature: domain Description: Y2_Tnp Location: 1833390-1833891 bp Feature: domain Description: Y2 _Tnp Location: 1833390-1833891 bp Feature: gene Location: 1834280-1834816 bp Feature: gene Location: 1930730-1931392 bp Ori: QGO34640.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1930778-1931354 bp Feature: domain Description: beta_CA_cladeB Location: 1930778-1931354 bp Feature: gene Location: 1931914-1932414 bp Ori: QGO34641.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1931986-1932259 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1931986-1932 2 59 bp Feature: gene Location: 1932516-1933718 bp Ori: QGO34642.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1932678-1933356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1932 678-1933356 bp Feature: gene Location: 1933824-1934126 bp Feature: gene Location: 1934511-1934960 bp Ori: QGO34644.1 Feature: domain Description: DDE_3 Location: 1934523-1934883 bp Feature: domain Description: DDE_3 Location: 193452 3-1934883 bp Feature: gene Location: 1935480-1936292 bp Ori: QGO34646.1 Feature: domain Description: PHA02517 Location: 1935495-1936278 bp Feature: domain Description: PHA02 517 Location: 1935495-19362 78 bp Feature: gene Location: 1936301-1936645 bp Ori: QGO34647.1 Feature: domain Description: HTH_23 Location: 1936319-1936430 bp Feature: domain Description: HTH_2 3 Location: 1936319-1936430 bp Feature: gene Location: 1936930-1938252 bp Ori: QGO34648.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1937212-1937893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19372 12 -1937893 bp Feature: gene Location: 1938661-1939476 bp Ori: QGO34649.1 Feature: domain Description: Y2_Tnp Location: 1938748-1939246 bp Feature: domain Description: Y2 _Tnp Location: 1938748-19392 46 bp Feature: gene Location: 2069861-2070922 bp Ori: QGO34783.1 Feature: domain Description: DDE_5 Location: 2069882-2070473 bp Feature: domain Description: DDE_5 Location: 2 069882 -2 070473 bp Feature: gene Location: 2070970-2071290 bp Ori: QGO34784.1 Feature: domain Description: HATPase_c_2 Location: 2070994-2071273 bp Feature: domain Description: HATPase_c_2 Location: 2 070994-2 0712 73 bp Feature: gene Location: 2072231-2072962 bp Ori: QGO34785.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2072237-2072555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 072 2 37-2 072 555 bp Feature: gene Location: 2073958-2074920 bp Ori: QGO34786.1 Feature: domain Description: MDR_like_2 Location: 2073961-2074900 bp Feature: domain Description: MDR_like_2 Location: 2 073961-2 074900 bp Feature: gene Location: 2075128-2076123 bp Ori: QGO34787.1 Feature: domain Description: MoxR Location: 2075179-2076121 bp Feature: domain Description: MoxR Location: 2 075179-2 07612 1 bp Feature: gene Location: 3122250-3122465 bp Ori: QGO35882.1 Feature: domain Description: COG2958 Location: 3122253-3122460 bp Feature: domain Description: COG2 958 Location: 312 2 2 53-312 2 460 bp Feature: gene Location: 3122864-3123259 bp Ori: QGO35883.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3122951-3123143 bp Feature: domain Description: Zn_Tnp_IS91 Location: 312 2 951-312 3143 bp Feature: gene Location: 3123471-3124793 bp Ori: QGO35884.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3123753-3124434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 3753-312 4434 bp Feature: gene Location: 3125490-3125741 bp Feature: gene Location: 3125886-3126593 bp Ori: QGO35886.1 Feature: domain Description: Y2_Tnp Location: 3125922-3126363 bp Feature: domain Description: Y2 _Tnp Location: 312 592 2 -312 6363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), AcrB (COG0841), Rve (COG3316), VI_chp_5 (TIGR03358)
beta_CA_cladeB (cd00884), HTH_23 (pfam13384), DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), COG2958 (Uncharacterized protein )