myRT

myRT report for GCA_009708835.1_ASM970883v1

Download annotations/find similar RTs

Seq: CP038952.1 Piscirickettsia salmonis strain Psal-040 chromosome, complete genome (3158635 bp)
Overview 1 RT 1: 915033-917708 bp 2 RT 2: 1136169-1142303 bp 3 RT 3: 1296835-1306410 bp 4 RT 4: 1827773-1832262 bp 5 RT 5: 1941889-1950405 bp 6 RT 6: 2081019-2087279 bp 7 RT 7: 3133976-3138089 bp Neighborhood of RT #1 [915033, 917708] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1136169, 1142311] HTH_Tnp_IS630 Y2_Tnp RVT-GII HTH_Tnp_IS630 DDE_3 RVT-GII PHA02517 InsE Neighborhood of RT #3 [1296835, 1306436] AcrB Y2_Tnp RVT-GII Rve VI_chp_5 Neighborhood of RT #4 [1827773, 1832262] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #5 [1941889, 1950635] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII DDE_3 PHA02517 HTH_23 RVT-GII Y2_Tnp Neighborhood of RT #6 [2081019, 2087281] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #7 [3133976, 3138319] COG2958 Zn_Tnp_IS91 RVT-GII Y2_Tnp Feature: gene Location: 915033-915482 bp Ori: QGO37247.1 Feature: domain Description: DDE_3 Location: 915045-915405 bp Feature: domain Description: DDE_3 Location: 91 5045-91 5405 bp Feature: gene Location: 915554-915919 bp Ori: QGO37248.1 Feature: domain Description: HTH_Tnp_IS630 Location: 915569-915908 bp Feature: domain Description: HTH_Tnp_IS630 Location: 91 5569-91 5908 bp Feature: gene Location: 916037-916612 bp Ori: QGO37249.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916043-916235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 6043-91 6235 bp Feature: gene Location: 916697-917095 bp Ori: QGO37250.1 Feature: domain Description: Zn_Tnp_IS91 Location: 916709-916940 bp Feature: domain Description: Zn_Tnp_IS91 Location: 91 6709-91 6940 bp Feature: gene Location: 917181-917708 bp Feature: gene Location: 1136169-1136534 bp Ori: QGO37465.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1136184-1136523 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 1 361 84-1 1 36523 bp Feature: gene Location: 1136556-1136885 bp Ori: QGO37466.1 Feature: domain Description: Y2_Tnp Location: 1136643-1136790 bp Feature: domain Description: Y2_Tnp Location: 1 1 36643-1 1 36790 bp Feature: gene Location: 1137294-1138616 bp Ori: QGO37467.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1137576-1138257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 37576-1 1 38257 bp Feature: gene Location: 1139147-1139512 bp Ori: QGO37468.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1139162-1139501 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 1 391 62-1 1 39501 bp Feature: gene Location: 1139584-1140033 bp Ori: QGO37469.1 Feature: domain Description: DDE_3 Location: 1139596-1139956 bp Feature: domain Description: DDE_3 Location: 1 1 39596-1 1 39956 bp Feature: gene Location: 1140541-1141149 bp Ori: QGO37470.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140742-1141135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 40742-1 1 41 1 35 bp Feature: gene Location: 1141158-1141970 bp Ori: QGO37471.1 Feature: domain Description: PHA02517 Location: 1141173-1141956 bp Feature: domain Description: PHA0251 7 Location: 1 1 41 1 73-1 1 41 956 bp Feature: gene Location: 1142018-1142311 bp Ori: QGO37472.1 Feature: domain Description: InsE Location: 1142024-1142303 bp Feature: domain Description: InsE Location: 1 1 42024-1 1 42303 bp Feature: gene Location: 1296835-1299915 bp Ori: QGO37626.1 Gene: bepE_3 Feature: domain Description: AcrB Location: 1296844-1299856 bp Feature: domain Description: AcrB Location: 1 296844-1 299856 bp Feature: gene Location: 1300214-1301029 bp Ori: QGO37627.1 Feature: domain Description: Y2_Tnp Location: 1300301-1300802 bp Feature: domain Description: Y2_Tnp Location: 1 300301 -1 300802 bp Feature: gene Location: 1301438-1302805 bp Ori: QGO37628.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301720-1302401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 301 720-1 302401 bp Feature: gene Location: 1303668-1304312 bp Ori: QGO37629.1 Feature: domain Description: Rve Location: 1303710-1304289 bp Feature: domain Description: Rve Location: 1 30371 0-1 304289 bp Feature: gene Location: 1305930-1306436 bp Ori: QGO37630.1 Feature: domain Description: VI_chp_5 Location: 1305942-1306410 bp Feature: domain Description: VI_chp_5 Location: 1 305942-1 30641 0 bp Feature: gene Location: 1827773-1828330 bp Feature: gene Location: 1828519-1828917 bp Ori: QGO38152.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1828531-1828762 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 828531 -1 828762 bp Feature: gene Location: 1828973-1830340 bp Ori: QGO38153.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1829255-1829936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 829255-1 829936 bp Feature: gene Location: 1830749-1831564 bp Ori: QGO38154.1 Feature: domain Description: Y2_Tnp Location: 1830836-1831337 bp Feature: domain Description: Y2_Tnp Location: 1 830836-1 831 337 bp Feature: gene Location: 1831726-1832262 bp Feature: gene Location: 1941889-1942551 bp Ori: QGO38256.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1941937-1942513 bp Feature: domain Description: beta_CA_cladeB Location: 1 941 937-1 94251 3 bp Feature: gene Location: 1943073-1943573 bp Ori: QGO38257.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1943145-1943418 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 9431 45-1 94341 8 bp Feature: gene Location: 1943675-1944877 bp Ori: QGO38258.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1943837-1944515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 943837-1 94451 5 bp Feature: gene Location: 1944983-1945285 bp Feature: gene Location: 1945670-1946119 bp Ori: QGO38260.1 Feature: domain Description: DDE_3 Location: 1945682-1946042 bp Feature: domain Description: DDE_3 Location: 1 945682-1 946042 bp Feature: gene Location: 1946639-1947451 bp Ori: QGO38262.1 Feature: domain Description: PHA02517 Location: 1946654-1947437 bp Feature: domain Description: PHA0251 7 Location: 1 946654-1 947437 bp Feature: gene Location: 1947460-1947804 bp Ori: QGO38263.1 Feature: domain Description: HTH_23 Location: 1947478-1947589 bp Feature: domain Description: HTH_23 Location: 1 947478-1 947589 bp Feature: gene Location: 1948089-1949411 bp Ori: QGO38264.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1948371-1949052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 948371 -1 949052 bp Feature: gene Location: 1949820-1950635 bp Ori: QGO38265.1 Feature: domain Description: Y2_Tnp Location: 1949907-1950405 bp Feature: domain Description: Y2_Tnp Location: 1 949907-1 950405 bp Feature: gene Location: 2081019-2082080 bp Ori: QGO38400.1 Feature: domain Description: DDE_5 Location: 2081040-2081631 bp Feature: domain Description: DDE_5 Location: 2081 040-2081 631 bp Feature: gene Location: 2082128-2082448 bp Ori: QGO38401.1 Feature: domain Description: HATPase_c_2 Location: 2082152-2082431 bp Feature: domain Description: HATPase_c_2 Location: 20821 52-2082431 bp Feature: gene Location: 2083389-2084120 bp Ori: QGO38402.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2083395-2083713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2083395-208371 3 bp Feature: gene Location: 2085116-2086078 bp Ori: QGO38403.1 Feature: domain Description: MDR_like_2 Location: 2085119-2086058 bp Feature: domain Description: MDR_like_2 Location: 20851 1 9-2086058 bp Feature: gene Location: 2086286-2087281 bp Ori: QGO38404.1 Feature: domain Description: MoxR Location: 2086337-2087279 bp Feature: domain Description: MoxR Location: 2086337-2087279 bp Feature: gene Location: 3133976-3134191 bp Ori: QGO39500.1 Feature: domain Description: COG2958 Location: 3133979-3134186 bp Feature: domain Description: COG2958 Location: 31 33979-31 341 86 bp Feature: gene Location: 3134590-3134985 bp Ori: QGO39501.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3134677-3134869 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31 34677-31 34869 bp Feature: gene Location: 3135197-3136519 bp Ori: QGO39502.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3135479-3136160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 35479-31 361 60 bp Feature: gene Location: 3137216-3137467 bp Feature: gene Location: 3137612-3138319 bp Ori: QGO39504.1 Feature: domain Description: Y2_Tnp Location: 3137648-3138089 bp Feature: domain Description: Y2_Tnp Location: 31 37648-31 38089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), AcrB (COG0841), Rve (COG3316), VI_chp_5 (TIGR03358)
beta_CA_cladeB (cd00884), HTH_23 (pfam13384), DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), COG2958 (Uncharacterized protein )

Seq: CP038953.1 Piscirickettsia salmonis strain Psal-040 plasmid unnamed1, complete sequence (194899 bp)
Overview 1 RT 1: 93780-99140 bp 2 RT 2: 143754-146682 bp 3 RT 3: 151483-155833 bp 4 RT 4: 189357-193904 bp Neighborhood of RT #1 [93780, 99454] PHA02517 InsE RVT-GII group_II_RT_mat RVT-GII RVT-GII Y2_Tnp HTH_3 Neighborhood of RT #2 [143754, 146696] Zn_Tnp_IS91 group_II_RT_mat RVT-GII InsE PHA02517 Neighborhood of RT #3 [151483, 155847] Y2_Tnp Zn_Tnp_IS91 RVT-GII InsE PHA02517 Neighborhood of RT #4 [189357, 193945] PHA02517 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 93780-94592 bp Ori: QGO39639.1 Feature: domain Description: PHA02517 Location: 93795-94578 bp Feature: domain Description: PHA02 517 Location: 93795-94578 bp Feature: gene Location: 94640-94933 bp Ori: QGO39640.1 Feature: domain Description: InsE Location: 94646-94925 bp Feature: domain Description: InsE Location: 94646-9492 5 bp Feature: gene Location: 94954-95661 bp Ori: QGO39641.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95236-95626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952 36-9562 6 bp Feature: gene Location: 96045-96542 bp Ori: QGO39642.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 96051-96402 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 96051-96402 bp Feature: gene Location: 96539-97003 bp Ori: QGO39643.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96557-97001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96557-97001 bp Feature: gene Location: 96972-97412 bp Ori: QGO39644.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97254-97404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 972 54-97404 bp Feature: gene Location: 97821-98636 bp Ori: QGO39645.1 Feature: domain Description: Y2_Tnp Location: 97908-98406 bp Feature: domain Description: Y2 _Tnp Location: 97908-98406 bp Feature: gene Location: 98990-99454 bp Ori: QGO39646.1 Feature: domain Description: HTH_3 Location: 98999-99140 bp Feature: domain Description: HTH_3 Location: 98999-99140 bp Feature: gene Location: 143754-144152 bp Ori: QGO39718.1 Feature: domain Description: Zn_Tnp_IS91 Location: 143766-143997 bp Feature: domain Description: Zn_Tnp_IS91 Location: 143766-143997 bp Feature: gene Location: 144208-144705 bp Ori: QGO39719.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 144214-144565 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1442 14-144565 bp Feature: gene Location: 144702-145478 bp Ori: QGO39720.1 Gene: ltrA_11 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144888-145476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144888-145476 bp Feature: gene Location: 145483-145836 bp Ori: QGO39721.1 Feature: domain Description: InsE Location: 145555-145828 bp Feature: domain Description: InsE Location: 145555-14582 8 bp Feature: gene Location: 145884-146696 bp Ori: QGO39722.1 Feature: domain Description: PHA02517 Location: 145899-146682 bp Feature: domain Description: PHA02 517 Location: 145899-146682 bp Feature: gene Location: 151483-152508 bp Ori: QGO39728.1 Feature: domain Description: Y2_Tnp Location: 151738-152278 bp Feature: domain Description: Y2 _Tnp Location: 151738-152 2 78 bp Feature: gene Location: 153244-153744 bp Ori: QGO39729.1 Feature: domain Description: Zn_Tnp_IS91 Location: 153316-153589 bp Feature: domain Description: Zn_Tnp_IS91 Location: 153316-153589 bp Feature: gene Location: 154006-154596 bp Ori: QGO39730.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154009-154417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154009-154417 bp Feature: gene Location: 154659-154952 bp Ori: QGO39731.1 Feature: domain Description: InsE Location: 154665-154944 bp Feature: domain Description: InsE Location: 154665-154944 bp Feature: gene Location: 155035-155847 bp Ori: QGO39732.1 Feature: domain Description: PHA02517 Location: 155050-155833 bp Feature: domain Description: PHA02 517 Location: 155050-155833 bp Feature: gene Location: 189357-190169 bp Ori: QGO39776.1 Feature: domain Description: PHA02517 Location: 189372-190155 bp Feature: domain Description: PHA02 517 Location: 189372 -190155 bp Feature: gene Location: 190217-190510 bp Ori: QGO39777.1 Feature: domain Description: InsE Location: 190223-190502 bp Feature: domain Description: InsE Location: 1902 2 3-190502 bp Feature: gene Location: 190470-191597 bp Ori: QGO39778.1 Gene: ltrA_12 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190752-191430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190752 -191430 bp Feature: gene Location: 192294-193109 bp Ori: QGO39779.1 Feature: domain Description: Y2_Tnp Location: 192381-192879 bp Feature: domain Description: Y2 _Tnp Location: 192 381-192 879 bp Feature: gene Location: 193355-193945 bp Ori: QGO39780.1 Feature: domain Description: Phage_integrase Location: 193382-193904 bp Feature: domain Description: Phage_integrase Location: 193382 -193904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), Y2_Tnp (pfam04986), HTH_3 (pfam01381), Zn_Tnp_IS91 (pfam14319), Phage_integrase (pfam00589)