myRT

myRT report for GCA_009708855.1_ASM970885v1

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Seq: CP038957.1 Piscirickettsia salmonis strain Psal-041 chromosome, complete genome (3147033 bp)
Overview 1 RT 1: 915349-918024 bp 2 RT 2: 1137610-1143744 bp 3 RT 3: 1299736-1309312 bp 4 RT 4: 1830730-1835219 bp 5 RT 5: 1931133-1939649 bp 6 RT 6: 2070264-2076524 bp 7 RT 7: 3122374-3126487 bp Neighborhood of RT #1 [915349, 918024] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1137610, 1143752] HTH_Tnp_IS630 Y2_Tnp RVT-GII HTH_Tnp_IS630 DDE_3 RVT-GII PHA02517 InsE Neighborhood of RT #3 [1299736, 1309338] AcrB Y2_Tnp RVT-GII Rve VI_chp_5 Neighborhood of RT #4 [1830730, 1835219] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #5 [1931133, 1939879] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII DDE_3 PHA02517 HTH_23 RVT-GII Y2_Tnp Neighborhood of RT #6 [2070264, 2076526] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #7 [3122374, 3126717] COG2958 Zn_Tnp_IS91 RVT-GII Y2_Tnp Feature: gene Location: 915349-915798 bp Ori: QGO40871.1 Feature: domain Description: DDE_3 Location: 915361-915721 bp Feature: domain Description: DDE_3 Location: 91 5361 -91 5721 bp Feature: gene Location: 915870-916235 bp Ori: QGO40872.1 Feature: domain Description: HTH_Tnp_IS630 Location: 915885-916224 bp Feature: domain Description: HTH_Tnp_IS630 Location: 91 5885-91 6224 bp Feature: gene Location: 916353-916928 bp Ori: QGO40873.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916359-916551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 6359-91 6551 bp Feature: gene Location: 917013-917411 bp Ori: QGO40874.1 Feature: domain Description: Zn_Tnp_IS91 Location: 917025-917256 bp Feature: domain Description: Zn_Tnp_IS91 Location: 91 7025-91 7256 bp Feature: gene Location: 917497-918024 bp Feature: gene Location: 1137610-1137975 bp Ori: QGO41091.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1137625-1137964 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 1 37625-1 1 37964 bp Feature: gene Location: 1137997-1138326 bp Ori: QGO41092.1 Feature: domain Description: Y2_Tnp Location: 1138084-1138231 bp Feature: domain Description: Y2_Tnp Location: 1 1 38084-1 1 38231 bp Feature: gene Location: 1138735-1140057 bp Ori: QGO41093.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1139017-1139698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 3901 7-1 1 39698 bp Feature: gene Location: 1140588-1140953 bp Ori: QGO41094.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1140603-1140942 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 1 40603-1 1 40942 bp Feature: gene Location: 1141025-1141474 bp Ori: QGO41095.1 Feature: domain Description: DDE_3 Location: 1141037-1141397 bp Feature: domain Description: DDE_3 Location: 1 1 41 037-1 1 41 397 bp Feature: gene Location: 1141982-1142590 bp Ori: QGO41096.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1142183-1142576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 421 83-1 1 42576 bp Feature: gene Location: 1142599-1143411 bp Ori: QGO41097.1 Feature: domain Description: PHA02517 Location: 1142614-1143397 bp Feature: domain Description: PHA0251 7 Location: 1 1 4261 4-1 1 43397 bp Feature: gene Location: 1143459-1143752 bp Ori: QGO41098.1 Feature: domain Description: InsE Location: 1143465-1143744 bp Feature: domain Description: InsE Location: 1 1 43465-1 1 43744 bp Feature: gene Location: 1299736-1302816 bp Ori: QGO41254.1 Gene: bepE_3 Feature: domain Description: AcrB Location: 1299745-1302757 bp Feature: domain Description: AcrB Location: 1 299745-1 302757 bp Feature: gene Location: 1303115-1303930 bp Ori: QGO41255.1 Feature: domain Description: Y2_Tnp Location: 1303202-1303703 bp Feature: domain Description: Y2_Tnp Location: 1 303202-1 303703 bp Feature: gene Location: 1304339-1305661 bp Ori: QGO41256.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1304621-1305302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 304621 -1 305302 bp Feature: gene Location: 1306570-1307214 bp Ori: QGO41257.1 Feature: domain Description: Rve Location: 1306612-1307191 bp Feature: domain Description: Rve Location: 1 30661 2-1 3071 91 bp Feature: gene Location: 1308832-1309338 bp Ori: QGO41258.1 Feature: domain Description: VI_chp_5 Location: 1308844-1309312 bp Feature: domain Description: VI_chp_5 Location: 1 308844-1 30931 2 bp Feature: gene Location: 1830730-1831287 bp Feature: gene Location: 1831476-1831874 bp Ori: QGO41779.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1831488-1831719 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 831 488-1 831 71 9 bp Feature: gene Location: 1831930-1833297 bp Ori: QGO41780.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1832212-1832893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 83221 2-1 832893 bp Feature: gene Location: 1833706-1834521 bp Ori: QGO41781.1 Feature: domain Description: Y2_Tnp Location: 1833793-1834294 bp Feature: domain Description: Y2_Tnp Location: 1 833793-1 834294 bp Feature: gene Location: 1834683-1835219 bp Feature: gene Location: 1931133-1931795 bp Ori: QGO41873.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1931181-1931757 bp Feature: domain Description: beta_CA_cladeB Location: 1 931 1 81 -1 931 757 bp Feature: gene Location: 1932317-1932817 bp Ori: QGO41874.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1932389-1932662 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 932389-1 932662 bp Feature: gene Location: 1932919-1934121 bp Ori: QGO41875.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1933081-1933759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 933081 -1 933759 bp Feature: gene Location: 1934227-1934529 bp Feature: gene Location: 1934914-1935363 bp Ori: QGO41877.1 Feature: domain Description: DDE_3 Location: 1934926-1935286 bp Feature: domain Description: DDE_3 Location: 1 934926-1 935286 bp Feature: gene Location: 1935883-1936695 bp Ori: QGO41879.1 Feature: domain Description: PHA02517 Location: 1935898-1936681 bp Feature: domain Description: PHA0251 7 Location: 1 935898-1 936681 bp Feature: gene Location: 1936704-1937048 bp Ori: QGO41880.1 Feature: domain Description: HTH_23 Location: 1936722-1936833 bp Feature: domain Description: HTH_23 Location: 1 936722-1 936833 bp Feature: gene Location: 1937333-1938655 bp Ori: QGO41881.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1937615-1938296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 93761 5-1 938296 bp Feature: gene Location: 1939064-1939879 bp Ori: QGO41882.1 Feature: domain Description: Y2_Tnp Location: 1939151-1939649 bp Feature: domain Description: Y2_Tnp Location: 1 9391 51 -1 939649 bp Feature: gene Location: 2070264-2071325 bp Ori: QGO42016.1 Feature: domain Description: DDE_5 Location: 2070285-2070876 bp Feature: domain Description: DDE_5 Location: 2070285-2070876 bp Feature: gene Location: 2071373-2071693 bp Ori: QGO42017.1 Feature: domain Description: HATPase_c_2 Location: 2071397-2071676 bp Feature: domain Description: HATPase_c_2 Location: 2071 397-2071 676 bp Feature: gene Location: 2072634-2073365 bp Ori: QGO42018.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2072640-2072958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2072640-2072958 bp Feature: gene Location: 2074361-2075323 bp Ori: QGO42019.1 Feature: domain Description: MDR_like_2 Location: 2074364-2075303 bp Feature: domain Description: MDR_like_2 Location: 2074364-2075303 bp Feature: gene Location: 2075531-2076526 bp Ori: QGO42020.1 Feature: domain Description: MoxR Location: 2075582-2076524 bp Feature: domain Description: MoxR Location: 2075582-2076524 bp Feature: gene Location: 3122374-3122589 bp Ori: QGO43114.1 Feature: domain Description: COG2958 Location: 3122377-3122584 bp Feature: domain Description: COG2958 Location: 31 22377-31 22584 bp Feature: gene Location: 3122988-3123383 bp Ori: QGO43115.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3123075-3123267 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31 23075-31 23267 bp Feature: gene Location: 3123595-3124917 bp Ori: QGO43116.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3123877-3124558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 23877-31 24558 bp Feature: gene Location: 3125614-3125865 bp Feature: gene Location: 3126010-3126717 bp Ori: QGO43118.1 Feature: domain Description: Y2_Tnp Location: 3126046-3126487 bp Feature: domain Description: Y2_Tnp Location: 31 26046-31 26487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), AcrB (COG0841), Rve (COG3316), VI_chp_5 (TIGR03358)
beta_CA_cladeB (cd00884), HTH_23 (pfam13384), DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), COG2958 (Uncharacterized protein )

Seq: CP038958.1 Piscirickettsia salmonis strain Psal-041 plasmid unnamed1, complete sequence (149109 bp)
Overview 1 RT 1: 47990-53350 bp 2 RT 2: 97964-100892 bp 3 RT 3: 105693-110043 bp 4 RT 4: 143567-148114 bp Neighborhood of RT #1 [47990, 53664] PHA02517 InsE RVT-GII group_II_RT_mat RVT-GII RVT-GII Y2_Tnp HTH_3 Neighborhood of RT #2 [97964, 100906] Zn_Tnp_IS91 group_II_RT_mat RVT-GII InsE PHA02517 Neighborhood of RT #3 [105693, 110057] Y2_Tnp Zn_Tnp_IS91 RVT-GII InsE PHA02517 Neighborhood of RT #4 [143567, 148155] PHA02517 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 47990-48802 bp Ori: QGO43201.1 Feature: domain Description: PHA02517 Location: 48005-48788 bp Feature: domain Description: PHA02 517 Location: 48005-48788 bp Feature: gene Location: 48850-49143 bp Ori: QGO43202.1 Feature: domain Description: InsE Location: 48856-49135 bp Feature: domain Description: InsE Location: 48856-49135 bp Feature: gene Location: 49164-49871 bp Ori: QGO43203.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49446-49836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49446-49836 bp Feature: gene Location: 50255-50752 bp Ori: QGO43204.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 50261-50612 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 502 61-50612 bp Feature: gene Location: 50749-51213 bp Ori: QGO43205.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50767-51211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50767-512 11 bp Feature: gene Location: 51182-51622 bp Ori: QGO43206.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51464-51614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51464-51614 bp Feature: gene Location: 52031-52846 bp Ori: QGO43207.1 Feature: domain Description: Y2_Tnp Location: 52118-52616 bp Feature: domain Description: Y2 _Tnp Location: 52 118-52 616 bp Feature: gene Location: 53200-53664 bp Ori: QGO43208.1 Feature: domain Description: HTH_3 Location: 53209-53350 bp Feature: domain Description: HTH_3 Location: 532 09-53350 bp Feature: gene Location: 97964-98362 bp Ori: QGO43280.1 Feature: domain Description: Zn_Tnp_IS91 Location: 97976-98207 bp Feature: domain Description: Zn_Tnp_IS91 Location: 97976-982 07 bp Feature: gene Location: 98418-98915 bp Ori: QGO43281.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 98424-98775 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 9842 4-98775 bp Feature: gene Location: 98912-99688 bp Ori: QGO43282.1 Gene: ltrA_11 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99098-99686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99098-99686 bp Feature: gene Location: 99693-100046 bp Ori: QGO43283.1 Feature: domain Description: InsE Location: 99765-100038 bp Feature: domain Description: InsE Location: 99765-100038 bp Feature: gene Location: 100094-100906 bp Ori: QGO43284.1 Feature: domain Description: PHA02517 Location: 100109-100892 bp Feature: domain Description: PHA02 517 Location: 100109-100892 bp Feature: gene Location: 105693-106718 bp Ori: QGO43290.1 Feature: domain Description: Y2_Tnp Location: 105948-106488 bp Feature: domain Description: Y2 _Tnp Location: 105948-106488 bp Feature: gene Location: 107454-107954 bp Ori: QGO43291.1 Feature: domain Description: Zn_Tnp_IS91 Location: 107526-107799 bp Feature: domain Description: Zn_Tnp_IS91 Location: 10752 6-107799 bp Feature: gene Location: 108216-108806 bp Ori: QGO43292.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108219-108627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1082 19-10862 7 bp Feature: gene Location: 108869-109162 bp Ori: QGO43293.1 Feature: domain Description: InsE Location: 108875-109154 bp Feature: domain Description: InsE Location: 108875-109154 bp Feature: gene Location: 109245-110057 bp Ori: QGO43294.1 Feature: domain Description: PHA02517 Location: 109260-110043 bp Feature: domain Description: PHA02 517 Location: 1092 60-110043 bp Feature: gene Location: 143567-144379 bp Ori: QGO43338.1 Feature: domain Description: PHA02517 Location: 143582-144365 bp Feature: domain Description: PHA02 517 Location: 143582 -144365 bp Feature: gene Location: 144427-144720 bp Ori: QGO43339.1 Feature: domain Description: InsE Location: 144433-144712 bp Feature: domain Description: InsE Location: 144433-144712 bp Feature: gene Location: 144680-145807 bp Ori: QGO43340.1 Gene: ltrA_12 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144962-145640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144962 -145640 bp Feature: gene Location: 146504-147319 bp Ori: QGO43341.1 Feature: domain Description: Y2_Tnp Location: 146591-147089 bp Feature: domain Description: Y2 _Tnp Location: 146591-147089 bp Feature: gene Location: 147565-148155 bp Ori: QGO43342.1 Feature: domain Description: Phage_integrase Location: 147592-148114 bp Feature: domain Description: Phage_integrase Location: 147592 -148114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), Y2_Tnp (pfam04986), HTH_3 (pfam01381), Zn_Tnp_IS91 (pfam14319), Phage_integrase (pfam00589)