myRT

myRT report for GCA_009708875.1_ASM970887v1

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Seq: CP038963.1 Piscirickettsia salmonis strain Psal-051 plasmid unnamed1, complete sequence (181949 bp)
Overview 1 RT 1: 26109-31469 bp 2 RT 2: 76017-79011 bp 3 RT 3: 83812-88162 bp 4 RT 4: 121686-126233 bp Neighborhood of RT #1 [26109, 31783] PHA02517 InsE RVT-GII group_II_RT_mat RVT-GII RVT-GII Y2_Tnp HTH_3 Neighborhood of RT #2 [76017, 79025] Zn_Tnp_IS91 group_II_RT_mat RVT-GII InsE PHA02517 Neighborhood of RT #3 [83812, 88176] Y2_Tnp Zn_Tnp_IS91 RVT-GII InsE PHA02517 Neighborhood of RT #4 [121686, 126274] PHA02517 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 26109-26921 bp Ori: QGO46737.1 Feature: domain Description: PHA02517 Location: 26124-26907 bp Feature: domain Description: PHA0251 7 Location: 261 24-26907 bp Feature: gene Location: 26969-27262 bp Ori: QGO46738.1 Feature: domain Description: InsE Location: 26975-27254 bp Feature: domain Description: InsE Location: 26975-27254 bp Feature: gene Location: 27283-27990 bp Ori: QGO46739.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27565-27955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27565-27955 bp Feature: gene Location: 28374-28871 bp Ori: QGO46740.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 28380-28731 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 28380-28731 bp Feature: gene Location: 28868-29332 bp Ori: QGO46741.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28886-29330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28886-29330 bp Feature: gene Location: 29301-29741 bp Ori: QGO46742.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29583-29733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29583-29733 bp Feature: gene Location: 30150-30965 bp Ori: QGO46743.1 Feature: domain Description: Y2_Tnp Location: 30237-30735 bp Feature: domain Description: Y2_Tnp Location: 30237-30735 bp Feature: gene Location: 31319-31783 bp Ori: QGO46744.1 Feature: domain Description: HTH_3 Location: 31328-31469 bp Feature: domain Description: HTH_3 Location: 31 328-31 469 bp Feature: gene Location: 76017-76481 bp Ori: QGO46816.1 Feature: domain Description: Zn_Tnp_IS91 Location: 76056-76326 bp Feature: domain Description: Zn_Tnp_IS91 Location: 76056-76326 bp Feature: gene Location: 76537-77034 bp Ori: QGO46817.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 76543-76894 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 76543-76894 bp Feature: gene Location: 77031-77807 bp Ori: QGO46818.1 Gene: ltrA_11 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77217-77805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7721 7-77805 bp Feature: gene Location: 77812-78165 bp Ori: QGO46819.1 Feature: domain Description: InsE Location: 77884-78157 bp Feature: domain Description: InsE Location: 77884-781 57 bp Feature: gene Location: 78213-79025 bp Ori: QGO46820.1 Feature: domain Description: PHA02517 Location: 78228-79011 bp Feature: domain Description: PHA0251 7 Location: 78228-7901 1 bp Feature: gene Location: 83812-84837 bp Ori: QGO46826.1 Feature: domain Description: Y2_Tnp Location: 84067-84607 bp Feature: domain Description: Y2_Tnp Location: 84067-84607 bp Feature: gene Location: 85573-86073 bp Ori: QGO46827.1 Feature: domain Description: Zn_Tnp_IS91 Location: 85645-85918 bp Feature: domain Description: Zn_Tnp_IS91 Location: 85645-8591 8 bp Feature: gene Location: 86335-86925 bp Ori: QGO46828.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86338-86746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86338-86746 bp Feature: gene Location: 86988-87281 bp Ori: QGO46829.1 Feature: domain Description: InsE Location: 86994-87273 bp Feature: domain Description: InsE Location: 86994-87273 bp Feature: gene Location: 87364-88176 bp Ori: QGO46830.1 Feature: domain Description: PHA02517 Location: 87379-88162 bp Feature: domain Description: PHA0251 7 Location: 87379-881 62 bp Feature: gene Location: 121686-122498 bp Ori: QGO46874.1 Feature: domain Description: PHA02517 Location: 121701-122484 bp Feature: domain Description: PHA0251 7 Location: 1 21 701 -1 22484 bp Feature: gene Location: 122546-122839 bp Ori: QGO46875.1 Feature: domain Description: InsE Location: 122552-122831 bp Feature: domain Description: InsE Location: 1 22552-1 22831 bp Feature: gene Location: 122799-123926 bp Ori: QGO46876.1 Gene: ltrA_12 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123081-123759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 23081 -1 23759 bp Feature: gene Location: 124623-125438 bp Ori: QGO46877.1 Feature: domain Description: Y2_Tnp Location: 124710-125208 bp Feature: domain Description: Y2_Tnp Location: 1 2471 0-1 25208 bp Feature: gene Location: 125684-126274 bp Ori: QGO46878.1 Feature: domain Description: Phage_integrase Location: 125711-126233 bp Feature: domain Description: Phage_integrase Location: 1 2571 1 -1 26233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), Y2_Tnp (pfam04986), HTH_3 (pfam01381), Zn_Tnp_IS91 (pfam14319), Phage_integrase (pfam00589)

Seq: CP038962.1 Piscirickettsia salmonis strain Psal-051 chromosome, complete genome (3142147 bp)
Overview 1 RT 1: 911684-914359 bp 2 RT 2: 1133945-1140079 bp 3 RT 3: 1294611-1304187 bp 4 RT 4: 1825871-1830360 bp 5 RT 5: 1926274-1934790 bp 6 RT 6: 2065405-2071665 bp 7 RT 7: 3117488-3121601 bp Neighborhood of RT #1 [911684, 914359] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1133945, 1140087] HTH_Tnp_IS630 Y2_Tnp RVT-GII HTH_Tnp_IS630 DDE_3 RVT-GII PHA02517 InsE Neighborhood of RT #3 [1294611, 1304213] AcrB Y2_Tnp RVT-GII Rve VI_chp_5 Neighborhood of RT #4 [1825871, 1830360] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #5 [1926274, 1935020] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII DDE_3 PHA02517 HTH_23 RVT-GII Y2_Tnp Neighborhood of RT #6 [2065405, 2071667] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #7 [3117488, 3121831] COG2958 Zn_Tnp_IS91 RVT-GII Y2_Tnp Feature: gene Location: 911684-912133 bp Ori: QGO44430.1 Feature: domain Description: DDE_3 Location: 911696-912056 bp Feature: domain Description: DDE_3 Location: 911696-912 056 bp Feature: gene Location: 912205-912570 bp Ori: QGO44431.1 Feature: domain Description: HTH_Tnp_IS630 Location: 912220-912559 bp Feature: domain Description: HTH_Tnp_IS630 Location: 912 2 2 0-912 559 bp Feature: gene Location: 912688-913263 bp Ori: QGO44432.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912694-912886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912 694-912 886 bp Feature: gene Location: 913348-913812 bp Ori: QGO44433.1 Feature: domain Description: Zn_Tnp_IS91 Location: 913387-913657 bp Feature: domain Description: Zn_Tnp_IS91 Location: 913387-913657 bp Feature: gene Location: 913832-914359 bp Feature: gene Location: 1133945-1134310 bp Ori: QGO44650.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1133960-1134299 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1133960-11342 99 bp Feature: gene Location: 1134332-1134661 bp Ori: QGO44651.1 Feature: domain Description: Y2_Tnp Location: 1134419-1134566 bp Feature: domain Description: Y2 _Tnp Location: 1134419-1134566 bp Feature: gene Location: 1135070-1136392 bp Ori: QGO44652.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1135352-1136033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1135352 -1136033 bp Feature: gene Location: 1136923-1137288 bp Ori: QGO44653.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1136938-1137277 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1136938-11372 77 bp Feature: gene Location: 1137360-1137809 bp Ori: QGO44654.1 Feature: domain Description: DDE_3 Location: 1137372-1137732 bp Feature: domain Description: DDE_3 Location: 1137372 -1137732 bp Feature: gene Location: 1138317-1138925 bp Ori: QGO44655.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1138518-1138911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1138518-1138911 bp Feature: gene Location: 1138934-1139746 bp Ori: QGO44656.1 Feature: domain Description: PHA02517 Location: 1138949-1139732 bp Feature: domain Description: PHA02 517 Location: 1138949-1139732 bp Feature: gene Location: 1139794-1140087 bp Ori: QGO44657.1 Feature: domain Description: InsE Location: 1139800-1140079 bp Feature: domain Description: InsE Location: 1139800-1140079 bp Feature: gene Location: 1294611-1297691 bp Ori: QGO44811.1 Gene: bepE_3 Feature: domain Description: AcrB Location: 1294620-1297632 bp Feature: domain Description: AcrB Location: 12 9462 0-12 97632 bp Feature: gene Location: 1297990-1298805 bp Ori: QGO44812.1 Feature: domain Description: Y2_Tnp Location: 1298077-1298578 bp Feature: domain Description: Y2 _Tnp Location: 12 98077-12 98578 bp Feature: gene Location: 1299214-1300536 bp Ori: QGO44813.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1299496-1300177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 99496-1300177 bp Feature: gene Location: 1301445-1302089 bp Ori: QGO44814.1 Feature: domain Description: Rve Location: 1301487-1302066 bp Feature: domain Description: Rve Location: 1301487-1302 066 bp Feature: gene Location: 1303707-1304213 bp Ori: QGO44815.1 Feature: domain Description: VI_chp_5 Location: 1303719-1304187 bp Feature: domain Description: VI_chp_5 Location: 1303719-1304187 bp Feature: gene Location: 1825871-1826428 bp Feature: gene Location: 1826617-1827015 bp Ori: QGO45336.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1826629-1826860 bp Feature: domain Description: Zn_Tnp_IS91 Location: 182 662 9-182 6860 bp Feature: gene Location: 1827071-1828438 bp Ori: QGO45337.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1827353-1828034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 7353-182 8034 bp Feature: gene Location: 1828847-1829662 bp Ori: QGO45338.1 Feature: domain Description: Y2_Tnp Location: 1828934-1829435 bp Feature: domain Description: Y2 _Tnp Location: 182 8934-182 9435 bp Feature: gene Location: 1829824-1830360 bp Feature: gene Location: 1926274-1926936 bp Ori: QGO45430.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1926322-1926898 bp Feature: domain Description: beta_CA_cladeB Location: 192 632 2 -192 6898 bp Feature: gene Location: 1927458-1927958 bp Ori: QGO45431.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1927530-1927803 bp Feature: domain Description: Zn_Tnp_IS91 Location: 192 7530-192 7803 bp Feature: gene Location: 1928060-1929262 bp Ori: QGO45432.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1928222-1928900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 82 2 2 -192 8900 bp Feature: gene Location: 1929368-1929670 bp Feature: gene Location: 1930055-1930504 bp Ori: QGO45434.1 Feature: domain Description: DDE_3 Location: 1930067-1930427 bp Feature: domain Description: DDE_3 Location: 1930067-193042 7 bp Feature: gene Location: 1931024-1931836 bp Ori: QGO45436.1 Feature: domain Description: PHA02517 Location: 1931039-1931822 bp Feature: domain Description: PHA02 517 Location: 1931039-193182 2 bp Feature: gene Location: 1931845-1932189 bp Ori: QGO45437.1 Feature: domain Description: HTH_23 Location: 1931863-1931974 bp Feature: domain Description: HTH_2 3 Location: 1931863-1931974 bp Feature: gene Location: 1932474-1933796 bp Ori: QGO45438.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1932756-1933437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1932 756-1933437 bp Feature: gene Location: 1934205-1935020 bp Ori: QGO45439.1 Feature: domain Description: Y2_Tnp Location: 1934292-1934790 bp Feature: domain Description: Y2 _Tnp Location: 19342 92 -1934790 bp Feature: gene Location: 2065405-2066466 bp Ori: QGO45574.1 Feature: domain Description: DDE_5 Location: 2065426-2066017 bp Feature: domain Description: DDE_5 Location: 2 06542 6-2 066017 bp Feature: gene Location: 2066514-2066834 bp Ori: QGO45575.1 Feature: domain Description: HATPase_c_2 Location: 2066538-2066817 bp Feature: domain Description: HATPase_c_2 Location: 2 066538-2 066817 bp Feature: gene Location: 2067775-2068506 bp Ori: QGO45576.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2067781-2068099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 067781-2 068099 bp Feature: gene Location: 2069502-2070464 bp Ori: QGO45577.1 Feature: domain Description: MDR_like_2 Location: 2069505-2070444 bp Feature: domain Description: MDR_like_2 Location: 2 069505-2 070444 bp Feature: gene Location: 2070672-2071667 bp Ori: QGO45578.1 Feature: domain Description: MoxR Location: 2070723-2071665 bp Feature: domain Description: MoxR Location: 2 07072 3-2 071665 bp Feature: gene Location: 3117488-3117703 bp Ori: QGO46674.1 Feature: domain Description: COG2958 Location: 3117491-3117698 bp Feature: domain Description: COG2 958 Location: 3117491-3117698 bp Feature: gene Location: 3118102-3118497 bp Ori: QGO46675.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3118189-3118381 bp Feature: domain Description: Zn_Tnp_IS91 Location: 3118189-3118381 bp Feature: gene Location: 3118709-3120031 bp Ori: QGO46676.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3118991-3119672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3118991-3119672 bp Feature: gene Location: 3120728-3120979 bp Feature: gene Location: 3121124-3121831 bp Ori: QGO46678.1 Feature: domain Description: Y2_Tnp Location: 3121160-3121601 bp Feature: domain Description: Y2 _Tnp Location: 312 1160-312 1601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), AcrB (COG0841), Rve (COG3316), VI_chp_5 (TIGR03358)
beta_CA_cladeB (cd00884), HTH_23 (pfam13384), DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), COG2958 (Uncharacterized protein )