myRT

myRT report for GCA_009708895.1_ASM970889v1

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Seq: CP038968.1 Piscirickettsia salmonis strain Psal-068 plasmid unnamed1, complete sequence (150783 bp)
Overview 1 RT 1: 68535-71447 bp 2 RT 2: 111423-115620 bp 3 RT 3: 126400-131874 bp Neighborhood of RT #1 [68535, 71461] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #2 [111423, 115634] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [126400, 131915] Zn_Tnp_IS91 PHA02517 RVT-GII InsE Y2_Tnp Phage_integrase Feature: gene Location: 68535-68984 bp Ori: QGO50360.1 Feature: domain Description: DDE_3 Location: 68547-68907 bp Feature: domain Description: DDE_3 Location: 68547-68907 bp Feature: gene Location: 69056-69421 bp Ori: QGO50361.1 Feature: domain Description: HTH_Tnp_IS630 Location: 69071-69410 bp Feature: domain Description: HTH_Tnp_IS630 Location: 69071 -6941 0 bp Feature: gene Location: 69521-70537 bp Ori: QGO50362.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69524-70178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69524-701 78 bp Feature: gene Location: 70639-71037 bp Ori: QGO50363.1 Feature: domain Description: Zn_Tnp_IS91 Location: 70651-70882 bp Feature: domain Description: Zn_Tnp_IS91 Location: 70651 -70882 bp Feature: gene Location: 71123-71461 bp Ori: QGO50364.1 Feature: domain Description: major_cap_HK97 Location: 71186-71447 bp Feature: domain Description: major_cap_HK97 Location: 71 1 86-71 447 bp Feature: gene Location: 111423-111887 bp Ori: QGO50426.1 Feature: domain Description: HTH_3 Location: 111432-111573 bp Feature: domain Description: HTH_3 Location: 1 1 1 432-1 1 1 573 bp Feature: gene Location: 112820-113344 bp Ori: QGO50427.1 Feature: domain Description: Y2_Tnp Location: 112907-113303 bp Feature: domain Description: Y2_Tnp Location: 1 1 2907-1 1 3303 bp Feature: gene Location: 113753-114460 bp Ori: QGO50428.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114035-114425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4035-1 1 4425 bp Feature: gene Location: 114481-114774 bp Ori: QGO50429.1 Feature: domain Description: InsE Location: 114487-114766 bp Feature: domain Description: InsE Location: 1 1 4487-1 1 4766 bp Feature: gene Location: 114822-115634 bp Ori: QGO50430.1 Feature: domain Description: PHA02517 Location: 114837-115620 bp Feature: domain Description: PHA0251 7 Location: 1 1 4837-1 1 5620 bp Feature: gene Location: 126400-126900 bp Ori: QGO50449.1 Feature: domain Description: Zn_Tnp_IS91 Location: 126472-126745 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 26472-1 26745 bp Feature: gene Location: 127328-128140 bp Ori: QGO50450.1 Feature: domain Description: PHA02517 Location: 127343-128126 bp Feature: domain Description: PHA0251 7 Location: 1 27343-1 281 26 bp Feature: gene Location: 128188-129567 bp Ori: QGO50451.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128470-129148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 28470-1 291 48 bp Feature: domain Description: InsE Location: 129286-129559 bp Feature: domain Description: InsE Location: 1 29286-1 29559 bp Feature: gene Location: 130264-131079 bp Ori: QGO50452.1 Feature: domain Description: Y2_Tnp Location: 130351-130849 bp Feature: domain Description: Y2_Tnp Location: 1 30351 -1 30849 bp Feature: gene Location: 131325-131915 bp Ori: QGO50453.1 Feature: domain Description: Phage_integrase Location: 131352-131874 bp Feature: domain Description: Phage_integrase Location: 1 31 352-1 31 874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Phage_integrase (pfam00589)

Seq: CP038967.1 Piscirickettsia salmonis strain Psal-068 chromosome, complete genome (3113959 bp)
Overview 1 RT 1: 892181-894855 bp 2 RT 2: 983414-988950 bp 3 RT 3: 1121509-1125808 bp 4 RT 4: 1293515-1298005 bp 5 RT 5: 1395298-1399772 bp 6 RT 6: 1757118-1761461 bp 7 RT 7: 1914876-1919033 bp 8 RT 8: 3088344-3092462 bp Neighborhood of RT #1 [892181, 894855] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [983414, 989399] MoxR MDR_like_2 RVT-GII HATPase_c_2 DDE_5 Neighborhood of RT #3 [1121509, 1125840] Y2_Tnp RVT-GII HTH_Tnp_1 HTH_21 Tra5 Neighborhood of RT #4 [1293515, 1298005] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #5 [1395298, 1399831] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII HTH_21 Tra5 HTH_Tnp_1 Neighborhood of RT #6 [1757118, 1761472] HTH_Tnp_1 RVT-GII PHA02517 InsE RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #7 [1914876, 1919044] Zn_Tnp_IS91 PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #8 [3088344, 3092473] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 892181-892630 bp Ori: QGO48006.1 Feature: domain Description: DDE_3 Location: 892193-892553 bp Feature: domain Description: DDE_3 Location: 892 193-892 553 bp Feature: gene Location: 892702-893067 bp Ori: QGO48007.1 Feature: domain Description: HTH_Tnp_IS630 Location: 892717-893056 bp Feature: domain Description: HTH_Tnp_IS630 Location: 892 717-893056 bp Feature: gene Location: 893185-893742 bp Ori: QGO48008.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 893191-893383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 893191-893383 bp Feature: gene Location: 893844-894242 bp Ori: QGO48009.1 Feature: domain Description: Zn_Tnp_IS91 Location: 893856-894087 bp Feature: domain Description: Zn_Tnp_IS91 Location: 893856-894087 bp Feature: gene Location: 894328-894855 bp Feature: gene Location: 983414-984409 bp Ori: QGO48099.1 Feature: domain Description: MoxR Location: 983465-984407 bp Feature: domain Description: MoxR Location: 983465-984407 bp Feature: gene Location: 984629-985591 bp Ori: QGO48100.1 Feature: domain Description: MDR_like_2 Location: 984632-985571 bp Feature: domain Description: MDR_like_2 Location: 984632 -985571 bp Feature: gene Location: 986299-987000 bp Ori: QGO48101.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986305-986623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986305-98662 3 bp Feature: gene Location: 987970-988290 bp Ori: QGO48102.1 Feature: domain Description: HATPase_c_2 Location: 987994-988273 bp Feature: domain Description: HATPase_c_2 Location: 987994-9882 73 bp Feature: gene Location: 988338-989399 bp Ori: QGO48103.1 Feature: domain Description: DDE_5 Location: 988359-988950 bp Feature: domain Description: DDE_5 Location: 988359-988950 bp Feature: gene Location: 1121509-1122324 bp Ori: QGO48232.1 Feature: domain Description: Y2_Tnp Location: 1121596-1122094 bp Feature: domain Description: Y2 _Tnp Location: 112 1596-112 2 094 bp Feature: gene Location: 1122705-1123691 bp Ori: QGO48233.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1122987-1123665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 2 987-112 3665 bp Feature: gene Location: 1124720-1124992 bp Ori: QGO48234.1 Feature: domain Description: HTH_Tnp_1 Location: 1124729-1124933 bp Feature: domain Description: HTH_Tnp_1 Location: 112 472 9-112 4933 bp Feature: gene Location: 1125004-1125840 bp Ori: QGO48235.1 Feature: domain Description: HTH_21 Location: 1125127-1125280 bp Feature: domain Description: HTH_2 1 Location: 112 512 7-112 52 80 bp Feature: domain Description: Tra5 Location: 1125328-1125808 bp Feature: domain Description: Tra5 Location: 112 532 8-112 5808 bp Feature: gene Location: 1293515-1294072 bp Feature: gene Location: 1294261-1294659 bp Ori: QGO48399.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1294273-1294504 bp Feature: domain Description: Zn_Tnp_IS91 Location: 12 942 73-12 94504 bp Feature: gene Location: 1294761-1296083 bp Ori: QGO48400.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1295043-1295724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 95043-12 9572 4 bp Feature: gene Location: 1296492-1297307 bp Ori: QGO48401.1 Feature: domain Description: Y2_Tnp Location: 1296579-1297080 bp Feature: domain Description: Y2 _Tnp Location: 12 96579-12 97080 bp Feature: gene Location: 1297469-1298005 bp Feature: gene Location: 1395298-1395960 bp Ori: QGO48497.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1395346-1395922 bp Feature: domain Description: beta_CA_cladeB Location: 1395346-139592 2 bp Feature: gene Location: 1396482-1396982 bp Ori: QGO48498.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1396554-1396827 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1396554-139682 7 bp Feature: gene Location: 1397084-1398286 bp Ori: QGO48499.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1397246-1397927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13972 46-139792 7 bp Feature: gene Location: 1398711-1399547 bp Ori: QGO48500.1 Feature: domain Description: HTH_21 Location: 1398834-1398987 bp Feature: domain Description: HTH_2 1 Location: 1398834-1398987 bp Feature: domain Description: Tra5 Location: 1399035-1399515 bp Feature: domain Description: Tra5 Location: 1399035-1399515 bp Feature: gene Location: 1399559-1399831 bp Ori: QGO48501.1 Feature: domain Description: HTH_Tnp_1 Location: 1399568-1399772 bp Feature: domain Description: HTH_Tnp_1 Location: 1399568-1399772 bp Feature: gene Location: 1757118-1757234 bp Feature: gene Location: 1757304-1757729 bp Ori: QGO48869.1 Feature: domain Description: HTH_Tnp_1 Location: 1757409-1757640 bp Feature: domain Description: HTH_Tnp_1 Location: 1757409-1757640 bp Feature: gene Location: 1757766-1758383 bp Ori: QGO48870.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1757769-1758180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1757769-1758180 bp Feature: gene Location: 1758461-1759273 bp Ori: QGO48871.1 Feature: domain Description: PHA02517 Location: 1758476-1759259 bp Feature: domain Description: PHA02 517 Location: 1758476-17592 59 bp Feature: gene Location: 1759321-1759614 bp Ori: QGO48872.1 Feature: domain Description: InsE Location: 1759327-1759606 bp Feature: domain Description: InsE Location: 175932 7-1759606 bp Feature: gene Location: 1759574-1760098 bp Ori: QGO48873.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1759775-1760003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1759775-1760003 bp Feature: gene Location: 1760588-1761085 bp Ori: QGO48874.1 Feature: domain Description: Y2_Tnp Location: 1760675-1761047 bp Feature: domain Description: Y2 _Tnp Location: 1760675-1761047 bp Feature: gene Location: 1761107-1761472 bp Ori: QGO48875.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1761122-1761461 bp Feature: domain Description: HTH_Tnp_IS630 Location: 176112 2 -1761461 bp Feature: gene Location: 1914876-1915286 bp Ori: QGO49033.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1914897-1915131 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1914897-1915131 bp Feature: gene Location: 1916121-1916933 bp Ori: QGO49034.1 Feature: domain Description: PHA02517 Location: 1916136-1916919 bp Feature: domain Description: PHA02 517 Location: 1916136-1916919 bp Feature: gene Location: 1917359-1917919 bp Ori: QGO49035.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1917641-1917890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1917641-1917890 bp Feature: gene Location: 1918328-1918657 bp Ori: QGO49036.1 Feature: domain Description: Y2_Tnp Location: 1918415-1918562 bp Feature: domain Description: Y2 _Tnp Location: 1918415-1918562 bp Feature: gene Location: 1918679-1919044 bp Ori: QGO49037.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1918694-1919033 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1918694-1919033 bp Feature: gene Location: 3088344-3088559 bp Ori: QGO50243.1 Feature: domain Description: COG2958 Location: 3088347-3088554 bp Feature: domain Description: COG2 958 Location: 3088347-3088554 bp Feature: gene Location: 3088958-3089353 bp Ori: QGO50244.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3089045-3089237 bp Feature: domain Description: Zn_Tnp_IS91 Location: 3089045-30892 37 bp Feature: gene Location: 3089565-3090884 bp Ori: QGO50245.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3089847-3090525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3089847-309052 5 bp Feature: gene Location: 3091581-3091832 bp Feature: gene Location: 3092108-3092473 bp Ori: QGO50247.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3092123-3092462 bp Feature: domain Description: HTH_Tnp_IS630 Location: 3092 12 3-3092 462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), MoxR (COG0714), MDR_like_2 (cd05289), HATPase_c_2 (pfam13581), DDE_5 (pfam13546), Y2_Tnp (pfam04986), HTH_Tnp_1 (pfam01527)
HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), COG2958 (Uncharacterized protein )