myRT

myRT report for GCA_009708915.1_ASM970891v1

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Seq: CP038932.1 Piscirickettsia salmonis strain Psal-025 chromosome, complete genome (3155351 bp)
Overview 1 RT 1: 920311-922985 bp 2 RT 2: 1011545-1017081 bp 3 RT 3: 1151162-1158868 bp 4 RT 4: 1269913-1274403 bp 5 RT 5: 1801821-1806164 bp 6 RT 6: 1959579-1963736 bp 7 RT 7: 3129736-3133854 bp Neighborhood of RT #1 [920311, 922985] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1011545, 1017530] MoxR MDR_like_2 RVT-GII HATPase_c_2 DDE_5 Neighborhood of RT #3 [1151162, 1158906] Y2_Tnp RVT-GII HTH_Tnp_1 HTH_21 Tra5 RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #4 [1269913, 1274403] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #5 [1801821, 1806175] HTH_Tnp_1 RVT-GII PHA02517 InsE RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #6 [1959579, 1963747] Zn_Tnp_IS91 PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #7 [3129736, 3133865] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 920311-920760 bp Ori: QGO22818.1 Feature: domain Description: DDE_3 Location: 920323-920683 bp Feature: domain Description: DDE_3 Location: 920323-920683 bp Feature: gene Location: 920832-921197 bp Ori: QGO22819.1 Feature: domain Description: HTH_Tnp_IS630 Location: 920847-921186 bp Feature: domain Description: HTH_Tnp_IS630 Location: 920847-921 1 86 bp Feature: gene Location: 921315-921872 bp Ori: QGO22820.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921321-921513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921 321 -921 51 3 bp Feature: gene Location: 921974-922372 bp Ori: QGO22821.1 Feature: domain Description: Zn_Tnp_IS91 Location: 921986-922217 bp Feature: domain Description: Zn_Tnp_IS91 Location: 921 986-92221 7 bp Feature: gene Location: 922458-922985 bp Feature: gene Location: 1011545-1012540 bp Ori: QGO22911.1 Feature: domain Description: MoxR Location: 1011596-1012538 bp Feature: domain Description: MoxR Location: 1 01 1 596-1 01 2538 bp Feature: gene Location: 1012760-1013722 bp Ori: QGO22912.1 Feature: domain Description: MDR_like_2 Location: 1012763-1013702 bp Feature: domain Description: MDR_like_2 Location: 1 01 2763-1 01 3702 bp Feature: gene Location: 1014430-1015131 bp Ori: QGO22913.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1014436-1014754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 4436-1 01 4754 bp Feature: gene Location: 1016101-1016421 bp Ori: QGO22914.1 Feature: domain Description: HATPase_c_2 Location: 1016125-1016404 bp Feature: domain Description: HATPase_c_2 Location: 1 01 61 25-1 01 6404 bp Feature: gene Location: 1016469-1017530 bp Ori: QGO22915.1 Feature: domain Description: DDE_5 Location: 1016490-1017081 bp Feature: domain Description: DDE_5 Location: 1 01 6490-1 01 7081 bp Feature: gene Location: 1151162-1151977 bp Ori: QGO23046.1 Feature: domain Description: Y2_Tnp Location: 1151249-1151747 bp Feature: domain Description: Y2_Tnp Location: 1 1 51 249-1 1 51 747 bp Feature: gene Location: 1152358-1153344 bp Ori: QGO23047.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1152640-1153318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 52640-1 1 5331 8 bp Feature: gene Location: 1154373-1154645 bp Ori: QGO23048.1 Feature: domain Description: HTH_Tnp_1 Location: 1154382-1154586 bp Feature: domain Description: HTH_Tnp_1 Location: 1 1 54382-1 1 54586 bp Feature: gene Location: 1154657-1155493 bp Ori: QGO23049.1 Feature: domain Description: HTH_21 Location: 1154780-1154933 bp Feature: domain Description: HTH_21 Location: 1 1 54780-1 1 54933 bp Feature: domain Description: Tra5 Location: 1154981-1155461 bp Feature: domain Description: Tra5 Location: 1 1 54981 -1 1 55461 bp Feature: gene Location: 1155918-1157120 bp Ori: QGO23050.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1156080-1156761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 56080-1 1 56761 bp Feature: gene Location: 1157222-1157722 bp Ori: QGO23051.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1157294-1157567 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 1 57294-1 1 57567 bp Feature: gene Location: 1158244-1158906 bp Ori: QGO23052.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1158292-1158868 bp Feature: domain Description: beta_CA_cladeB Location: 1 1 58292-1 1 58868 bp Feature: gene Location: 1269913-1270449 bp Feature: gene Location: 1270611-1271426 bp Ori: QGO23158.1 Feature: domain Description: Y2_Tnp Location: 1270698-1271199 bp Feature: domain Description: Y2_Tnp Location: 1 270698-1 271 1 99 bp Feature: gene Location: 1271835-1273157 bp Ori: QGO23159.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1272117-1272798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2721 1 7-1 272798 bp Feature: gene Location: 1273259-1273657 bp Ori: QGO23160.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1273271-1273502 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 273271 -1 273502 bp Feature: gene Location: 1273846-1274403 bp Feature: gene Location: 1801821-1801937 bp Feature: gene Location: 1802007-1802432 bp Ori: QGO23693.1 Feature: domain Description: HTH_Tnp_1 Location: 1802112-1802343 bp Feature: domain Description: HTH_Tnp_1 Location: 1 8021 1 2-1 802343 bp Feature: gene Location: 1802469-1803086 bp Ori: QGO23694.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1802472-1802883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 802472-1 802883 bp Feature: gene Location: 1803164-1803976 bp Ori: QGO23695.1 Feature: domain Description: PHA02517 Location: 1803179-1803962 bp Feature: domain Description: PHA0251 7 Location: 1 8031 79-1 803962 bp Feature: gene Location: 1804024-1804317 bp Ori: QGO23696.1 Feature: domain Description: InsE Location: 1804030-1804309 bp Feature: domain Description: InsE Location: 1 804030-1 804309 bp Feature: gene Location: 1804277-1804801 bp Ori: QGO23697.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1804478-1804706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 804478-1 804706 bp Feature: gene Location: 1805291-1805788 bp Ori: QGO23698.1 Feature: domain Description: Y2_Tnp Location: 1805378-1805750 bp Feature: domain Description: Y2_Tnp Location: 1 805378-1 805750 bp Feature: gene Location: 1805810-1806175 bp Ori: QGO23699.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1805825-1806164 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 805825-1 8061 64 bp Feature: gene Location: 1959579-1959989 bp Ori: QGO23857.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1959600-1959834 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 959600-1 959834 bp Feature: gene Location: 1960824-1961636 bp Ori: QGO23858.1 Feature: domain Description: PHA02517 Location: 1960839-1961622 bp Feature: domain Description: PHA0251 7 Location: 1 960839-1 961 622 bp Feature: gene Location: 1962062-1962622 bp Ori: QGO23859.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1962344-1962593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 962344-1 962593 bp Feature: gene Location: 1963031-1963360 bp Ori: QGO23860.1 Feature: domain Description: Y2_Tnp Location: 1963118-1963265 bp Feature: domain Description: Y2_Tnp Location: 1 9631 1 8-1 963265 bp Feature: gene Location: 1963382-1963747 bp Ori: QGO23861.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1963397-1963736 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 963397-1 963736 bp Feature: gene Location: 3129736-3129951 bp Ori: QGO25059.1 Feature: domain Description: COG2958 Location: 3129739-3129946 bp Feature: domain Description: COG2958 Location: 31 29739-31 29946 bp Feature: gene Location: 3130350-3130745 bp Ori: QGO25060.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3130437-3130629 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31 30437-31 30629 bp Feature: gene Location: 3130957-3132276 bp Ori: QGO25061.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3131239-3131917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 31 239-31 31 91 7 bp Feature: gene Location: 3132973-3133224 bp Feature: gene Location: 3133500-3133865 bp Ori: QGO25063.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3133515-3133854 bp Feature: domain Description: HTH_Tnp_IS630 Location: 31 3351 5-31 33854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), MoxR (COG0714), MDR_like_2 (cd05289), HATPase_c_2 (pfam13581), DDE_5 (pfam13546), Y2_Tnp (pfam04986), HTH_Tnp_1 (pfam01527)
HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), COG2958 (Uncharacterized protein )

Seq: CP038933.1 Piscirickettsia salmonis strain Psal-025 plasmid unnamed1, complete sequence (225323 bp)
Overview 1 RT 1: 128410-131322 bp 2 RT 2: 174349-178546 bp 3 RT 3: 189326-194800 bp Neighborhood of RT #1 [128410, 131336] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #2 [174349, 178560] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [189326, 194841] Zn_Tnp_IS91 PHA02517 RVT-GII InsE Y2_Tnp Phage_integrase Feature: gene Location: 128410-128859 bp Ori: QGO25243.1 Feature: domain Description: DDE_3 Location: 128422-128782 bp Feature: domain Description: DDE_3 Location: 12 842 2 -12 8782 bp Feature: gene Location: 128931-129296 bp Ori: QGO25244.1 Feature: domain Description: HTH_Tnp_IS630 Location: 128946-129285 bp Feature: domain Description: HTH_Tnp_IS630 Location: 12 8946-12 92 85 bp Feature: gene Location: 129396-130412 bp Ori: QGO25245.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129399-130053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 9399-130053 bp Feature: gene Location: 130514-130912 bp Ori: QGO25246.1 Feature: domain Description: Zn_Tnp_IS91 Location: 130526-130757 bp Feature: domain Description: Zn_Tnp_IS91 Location: 13052 6-130757 bp Feature: gene Location: 130998-131336 bp Ori: QGO25247.1 Feature: domain Description: major_cap_HK97 Location: 131061-131322 bp Feature: domain Description: major_cap_HK97 Location: 131061-13132 2 bp Feature: gene Location: 174349-174813 bp Ori: QGO25317.1 Feature: domain Description: HTH_3 Location: 174358-174499 bp Feature: domain Description: HTH_3 Location: 174358-174499 bp Feature: gene Location: 175746-176270 bp Ori: QGO25318.1 Feature: domain Description: Y2_Tnp Location: 175833-176229 bp Feature: domain Description: Y2 _Tnp Location: 175833-1762 2 9 bp Feature: gene Location: 176679-177386 bp Ori: QGO25319.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176961-177351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176961-177351 bp Feature: gene Location: 177407-177700 bp Ori: QGO25320.1 Feature: domain Description: InsE Location: 177413-177692 bp Feature: domain Description: InsE Location: 177413-177692 bp Feature: gene Location: 177748-178560 bp Ori: QGO25321.1 Feature: domain Description: PHA02517 Location: 177763-178546 bp Feature: domain Description: PHA02 517 Location: 177763-178546 bp Feature: gene Location: 189326-189826 bp Ori: QGO25340.1 Feature: domain Description: Zn_Tnp_IS91 Location: 189398-189671 bp Feature: domain Description: Zn_Tnp_IS91 Location: 189398-189671 bp Feature: gene Location: 190254-191066 bp Ori: QGO25341.1 Feature: domain Description: PHA02517 Location: 190269-191052 bp Feature: domain Description: PHA02 517 Location: 1902 69-191052 bp Feature: gene Location: 191114-192493 bp Ori: QGO25342.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191396-192074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191396-192 074 bp Feature: domain Description: InsE Location: 192212-192485 bp Feature: domain Description: InsE Location: 192 2 12 -192 485 bp Feature: gene Location: 193190-194005 bp Ori: QGO25343.1 Feature: domain Description: Y2_Tnp Location: 193277-193775 bp Feature: domain Description: Y2 _Tnp Location: 1932 77-193775 bp Feature: gene Location: 194251-194841 bp Ori: QGO25344.1 Feature: domain Description: Phage_integrase Location: 194278-194800 bp Feature: domain Description: Phage_integrase Location: 1942 78-194800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Phage_integrase (pfam00589)