myRT

myRT report for GCA_009708935.1_ASM970893v1

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Seq: CP038973.1 Piscirickettsia salmonis strain Psal-069 plasmid unnamed1, complete sequence (158592 bp)
Overview 1 RT 1: 88856-91768 bp 2 RT 2: 134795-138992 bp 3 RT 3: 149772-157586 bp Neighborhood of RT #1 [88856, 91782] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #2 [134795, 139006] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [149772, 157627] Zn_Tnp_IS91 PHA02517 RVT-GII InsE HTH_21 Tra5 HTH_Tnp_1 Tra8 RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 88856-89305 bp Ori: QGO53971.1 Feature: domain Description: DDE_3 Location: 88868-89228 bp Feature: domain Description: DDE_3 Location: 88868-89228 bp Feature: gene Location: 89377-89742 bp Ori: QGO53972.1 Feature: domain Description: HTH_Tnp_IS630 Location: 89392-89731 bp Feature: domain Description: HTH_Tnp_IS630 Location: 89392-89731 bp Feature: gene Location: 89842-90858 bp Ori: QGO53973.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89845-90499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89845-90499 bp Feature: gene Location: 90960-91358 bp Ori: QGO53974.1 Feature: domain Description: Zn_Tnp_IS91 Location: 90972-91203 bp Feature: domain Description: Zn_Tnp_IS91 Location: 90972-91 203 bp Feature: gene Location: 91444-91782 bp Ori: QGO53975.1 Feature: domain Description: major_cap_HK97 Location: 91507-91768 bp Feature: domain Description: major_cap_HK97 Location: 91 507-91 768 bp Feature: gene Location: 134795-135259 bp Ori: QGO54045.1 Feature: domain Description: HTH_3 Location: 134804-134945 bp Feature: domain Description: HTH_3 Location: 1 34804-1 34945 bp Feature: gene Location: 136192-136716 bp Ori: QGO54046.1 Feature: domain Description: Y2_Tnp Location: 136279-136675 bp Feature: domain Description: Y2_Tnp Location: 1 36279-1 36675 bp Feature: gene Location: 137125-137832 bp Ori: QGO54047.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137407-137797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 37407-1 37797 bp Feature: gene Location: 137853-138146 bp Ori: QGO54048.1 Feature: domain Description: InsE Location: 137859-138138 bp Feature: domain Description: InsE Location: 1 37859-1 381 38 bp Feature: gene Location: 138194-139006 bp Ori: QGO54049.1 Feature: domain Description: PHA02517 Location: 138209-138992 bp Feature: domain Description: PHA0251 7 Location: 1 38209-1 38992 bp Feature: gene Location: 149772-150272 bp Ori: QGO54068.1 Feature: domain Description: Zn_Tnp_IS91 Location: 149844-150117 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 49844-1 501 1 7 bp Feature: gene Location: 150700-151512 bp Ori: QGO54069.1 Feature: domain Description: PHA02517 Location: 150715-151498 bp Feature: domain Description: PHA0251 7 Location: 1 5071 5-1 51 498 bp Feature: gene Location: 151560-152300 bp Ori: QGO54070.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151566-151881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 566-1 51 881 bp Feature: domain Description: InsE Location: 152019-152292 bp Feature: domain Description: InsE Location: 1 5201 9-1 52292 bp Feature: gene Location: 152623-153459 bp Ori: QGO54071.1 Feature: domain Description: HTH_21 Location: 152746-152899 bp Feature: domain Description: HTH_21 Location: 1 52746-1 52899 bp Feature: domain Description: Tra5 Location: 152947-153427 bp Feature: domain Description: Tra5 Location: 1 52947-1 53427 bp Feature: gene Location: 153471-153743 bp Ori: QGO54072.1 Feature: domain Description: HTH_Tnp_1 Location: 153480-153684 bp Feature: domain Description: HTH_Tnp_1 Location: 1 53480-1 53684 bp Feature: gene Location: 153794-154603 bp Ori: QGO54073.1 Feature: domain Description: Tra8 Location: 153797-154580 bp Feature: domain Description: Tra8 Location: 1 53797-1 54580 bp Feature: gene Location: 154662-155279 bp Ori: QGO54074.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154944-155253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 54944-1 55253 bp Feature: gene Location: 155976-156791 bp Ori: QGO54075.1 Feature: domain Description: Y2_Tnp Location: 156063-156561 bp Feature: domain Description: Y2_Tnp Location: 1 56063-1 56561 bp Feature: gene Location: 157037-157627 bp Ori: QGO54076.1 Feature: domain Description: Phage_integrase Location: 157064-157586 bp Feature: domain Description: Phage_integrase Location: 1 57064-1 57586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HTH_21 (pfam13276)
Tra5 (COG2801), HTH_Tnp_1 (pfam01527), Tra8 (COG2826), Phage_integrase (pfam00589)

Seq: CP038972.1 Piscirickettsia salmonis strain Psal-069 chromosome, complete genome (3138668 bp)
Overview 1 RT 1: 914004-916678 bp 2 RT 2: 1005249-1010785 bp 3 RT 3: 1143344-1151050 bp 4 RT 4: 1248382-1252872 bp 5 RT 5: 1779172-1783515 bp 6 RT 6: 1936643-1940800 bp 7 RT 7: 3113053-3117171 bp Neighborhood of RT #1 [914004, 916678] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1005249, 1011234] MoxR MDR_like_2 RVT-GII HATPase_c_2 DDE_5 Neighborhood of RT #3 [1143344, 1151088] Y2_Tnp RVT-GII HTH_Tnp_1 HTH_21 Tra5 RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #4 [1248382, 1252872] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #5 [1779172, 1783526] HTH_Tnp_1 RVT-GII PHA02517 InsE RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #6 [1936643, 1940811] Zn_Tnp_IS91 PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #7 [3113053, 3117182] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 914004-914453 bp Ori: QGO51582.1 Feature: domain Description: DDE_3 Location: 914016-914376 bp Feature: domain Description: DDE_3 Location: 914016-914376 bp Feature: gene Location: 914525-914890 bp Ori: QGO51583.1 Feature: domain Description: HTH_Tnp_IS630 Location: 914540-914879 bp Feature: domain Description: HTH_Tnp_IS630 Location: 914540-914879 bp Feature: gene Location: 915008-915565 bp Ori: QGO51584.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915014-915206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915014-9152 06 bp Feature: gene Location: 915667-916065 bp Ori: QGO51585.1 Feature: domain Description: Zn_Tnp_IS91 Location: 915679-915910 bp Feature: domain Description: Zn_Tnp_IS91 Location: 915679-915910 bp Feature: gene Location: 916151-916678 bp Feature: gene Location: 1005249-1006244 bp Ori: QGO51675.1 Feature: domain Description: MoxR Location: 1005300-1006242 bp Feature: domain Description: MoxR Location: 1005300-10062 42 bp Feature: gene Location: 1006464-1007426 bp Ori: QGO51676.1 Feature: domain Description: MDR_like_2 Location: 1006467-1007406 bp Feature: domain Description: MDR_like_2 Location: 1006467-1007406 bp Feature: gene Location: 1008134-1008835 bp Ori: QGO51677.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008140-1008458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1008140-1008458 bp Feature: gene Location: 1009805-1010125 bp Ori: QGO51678.1 Feature: domain Description: HATPase_c_2 Location: 1009829-1010108 bp Feature: domain Description: HATPase_c_2 Location: 100982 9-1010108 bp Feature: gene Location: 1010173-1011234 bp Ori: QGO51679.1 Feature: domain Description: DDE_5 Location: 1010194-1010785 bp Feature: domain Description: DDE_5 Location: 1010194-1010785 bp Feature: gene Location: 1143344-1144159 bp Ori: QGO51808.1 Feature: domain Description: Y2_Tnp Location: 1143431-1143929 bp Feature: domain Description: Y2 _Tnp Location: 1143431-114392 9 bp Feature: gene Location: 1144540-1145526 bp Ori: QGO51809.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1144822-1145500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114482 2 -1145500 bp Feature: gene Location: 1146555-1146827 bp Ori: QGO51810.1 Feature: domain Description: HTH_Tnp_1 Location: 1146564-1146768 bp Feature: domain Description: HTH_Tnp_1 Location: 1146564-1146768 bp Feature: gene Location: 1146839-1147675 bp Ori: QGO51811.1 Feature: domain Description: HTH_21 Location: 1146962-1147115 bp Feature: domain Description: HTH_2 1 Location: 1146962 -1147115 bp Feature: domain Description: Tra5 Location: 1147163-1147643 bp Feature: domain Description: Tra5 Location: 1147163-1147643 bp Feature: gene Location: 1148100-1149302 bp Ori: QGO51812.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1148262-1148943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11482 62 -1148943 bp Feature: gene Location: 1149404-1149904 bp Ori: QGO51813.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1149476-1149749 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1149476-1149749 bp Feature: gene Location: 1150426-1151088 bp Ori: QGO51814.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1150474-1151050 bp Feature: domain Description: beta_CA_cladeB Location: 1150474-1151050 bp Feature: gene Location: 1248382-1248918 bp Feature: gene Location: 1249080-1249895 bp Ori: QGO51910.1 Feature: domain Description: Y2_Tnp Location: 1249167-1249668 bp Feature: domain Description: Y2 _Tnp Location: 12 49167-12 49668 bp Feature: gene Location: 1250304-1251626 bp Ori: QGO51911.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1250586-1251267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 50586-12 512 67 bp Feature: gene Location: 1251728-1252126 bp Ori: QGO51912.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1251740-1251971 bp Feature: domain Description: Zn_Tnp_IS91 Location: 12 51740-12 51971 bp Feature: gene Location: 1252315-1252872 bp Feature: gene Location: 1779172-1779288 bp Feature: gene Location: 1779358-1779783 bp Ori: QGO52447.1 Feature: domain Description: HTH_Tnp_1 Location: 1779463-1779694 bp Feature: domain Description: HTH_Tnp_1 Location: 1779463-1779694 bp Feature: gene Location: 1779820-1780437 bp Ori: QGO52448.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1779823-1780234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177982 3-17802 34 bp Feature: gene Location: 1780515-1781327 bp Ori: QGO52449.1 Feature: domain Description: PHA02517 Location: 1780530-1781313 bp Feature: domain Description: PHA02 517 Location: 1780530-1781313 bp Feature: gene Location: 1781375-1781668 bp Ori: QGO52450.1 Feature: domain Description: InsE Location: 1781381-1781660 bp Feature: domain Description: InsE Location: 1781381-1781660 bp Feature: gene Location: 1781628-1782152 bp Ori: QGO52451.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1781829-1782057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178182 9-1782 057 bp Feature: gene Location: 1782642-1783139 bp Ori: QGO52452.1 Feature: domain Description: Y2_Tnp Location: 1782729-1783101 bp Feature: domain Description: Y2 _Tnp Location: 1782 72 9-1783101 bp Feature: gene Location: 1783161-1783526 bp Ori: QGO52453.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1783176-1783515 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1783176-1783515 bp Feature: gene Location: 1936643-1937053 bp Ori: QGO52610.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1936664-1936898 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1936664-1936898 bp Feature: gene Location: 1937888-1938700 bp Ori: QGO52611.1 Feature: domain Description: PHA02517 Location: 1937903-1938686 bp Feature: domain Description: PHA02 517 Location: 1937903-1938686 bp Feature: gene Location: 1939126-1939686 bp Ori: QGO52612.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939408-1939657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939408-1939657 bp Feature: gene Location: 1940095-1940424 bp Ori: QGO52613.1 Feature: domain Description: Y2_Tnp Location: 1940182-1940329 bp Feature: domain Description: Y2 _Tnp Location: 1940182 -194032 9 bp Feature: gene Location: 1940446-1940811 bp Ori: QGO52614.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1940461-1940800 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1940461-1940800 bp Feature: gene Location: 3113053-3113268 bp Ori: QGO53827.1 Feature: domain Description: COG2958 Location: 3113056-3113263 bp Feature: domain Description: COG2 958 Location: 3113056-31132 63 bp Feature: gene Location: 3113667-3114062 bp Ori: QGO53828.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3113754-3113946 bp Feature: domain Description: Zn_Tnp_IS91 Location: 3113754-3113946 bp Feature: gene Location: 3114274-3115593 bp Ori: QGO53829.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3114556-3115234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3114556-31152 34 bp Feature: gene Location: 3116290-3116541 bp Feature: gene Location: 3116817-3117182 bp Ori: QGO53831.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3116832-3117171 bp Feature: domain Description: HTH_Tnp_IS630 Location: 3116832 -3117171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), MoxR (COG0714), MDR_like_2 (cd05289), HATPase_c_2 (pfam13581), DDE_5 (pfam13546), Y2_Tnp (pfam04986), HTH_Tnp_1 (pfam01527)
HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), COG2958 (Uncharacterized protein )