myRT

myRT report for GCA_009708955.1_ASM970895v1

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Seq: CP039032.1 Piscirickettsia salmonis strain Psal-070 chromosome, complete genome (3162712 bp)
Overview 1 RT 1: 1363194-1367207 bp 2 RT 2: 1520767-1525121 bp 3 RT 3: 1882399-1886894 bp 4 RT 4: 2011655-2016145 bp 5 RT 5: 2183822-2187923 bp 6 RT 6: 2320263-2326246 bp 7 RT 7: 2414808-2417405 bp 8 RT 8: 3137097-3141215 bp Neighborhood of RT #1 [1363194, 1367362] HTH_Tnp_IS630 Y2_Tnp RVT-GII PHA02517 Zn_Tnp_IS91 Neighborhood of RT #2 [1520767, 1525121] HTH_Tnp_IS630 Y2_Tnp RVT-GII InsE PHA02517 RVT-GII HTH_Tnp_1 Neighborhood of RT #3 [1882399, 1886932] HTH_Tnp_1 HTH_21 Tra5 RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #4 [2011655, 2016145] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #5 [2183822, 2188153] HTH_21 Tra5 HTH_Tnp_1 RVT-GII Y2_Tnp Neighborhood of RT #6 [2320263, 2326248] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #7 [2414808, 2417482] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Neighborhood of RT #8 [3137097, 3141226] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 1363194-1363559 bp Ori: QGO55572.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1363209-1363548 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 363209-1 363548 bp Feature: gene Location: 1363581-1363910 bp Ori: QGO55573.1 Feature: domain Description: Y2_Tnp Location: 1363668-1363815 bp Feature: domain Description: Y2_Tnp Location: 1 363668-1 36381 5 bp Feature: gene Location: 1364319-1364879 bp Ori: QGO55574.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1364601-1364850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 364601 -1 364850 bp Feature: gene Location: 1365305-1366117 bp Ori: QGO55575.1 Feature: domain Description: PHA02517 Location: 1365320-1366103 bp Feature: domain Description: PHA0251 7 Location: 1 365320-1 3661 03 bp Feature: gene Location: 1366952-1367362 bp Ori: QGO55576.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1366973-1367207 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 366973-1 367207 bp Feature: gene Location: 1520767-1521132 bp Ori: QGO55732.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1520782-1521121 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 520782-1 521 1 21 bp Feature: gene Location: 1521154-1521651 bp Ori: QGO55733.1 Feature: domain Description: Y2_Tnp Location: 1521241-1521613 bp Feature: domain Description: Y2_Tnp Location: 1 521 241 -1 521 61 3 bp Feature: gene Location: 1522141-1522665 bp Ori: QGO55734.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1522342-1522570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 522342-1 522570 bp Feature: gene Location: 1522625-1522918 bp Ori: QGO55735.1 Feature: domain Description: InsE Location: 1522631-1522910 bp Feature: domain Description: InsE Location: 1 522631 -1 52291 0 bp Feature: gene Location: 1522966-1523778 bp Ori: QGO55736.1 Feature: domain Description: PHA02517 Location: 1522981-1523764 bp Feature: domain Description: PHA0251 7 Location: 1 522981 -1 523764 bp Feature: gene Location: 1523856-1524473 bp Ori: QGO55737.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1523859-1524270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 523859-1 524270 bp Feature: gene Location: 1524510-1524935 bp Ori: QGO55738.1 Feature: domain Description: HTH_Tnp_1 Location: 1524615-1524846 bp Feature: domain Description: HTH_Tnp_1 Location: 1 52461 5-1 524846 bp Feature: gene Location: 1525005-1525121 bp Feature: gene Location: 1882399-1882671 bp Ori: QGO56106.1 Feature: domain Description: HTH_Tnp_1 Location: 1882408-1882612 bp Feature: domain Description: HTH_Tnp_1 Location: 1 882408-1 88261 2 bp Feature: gene Location: 1882683-1883519 bp Ori: QGO56107.1 Feature: domain Description: HTH_21 Location: 1882806-1882959 bp Feature: domain Description: HTH_21 Location: 1 882806-1 882959 bp Feature: domain Description: Tra5 Location: 1883007-1883487 bp Feature: domain Description: Tra5 Location: 1 883007-1 883487 bp Feature: gene Location: 1883944-1885146 bp Ori: QGO56108.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1884106-1884787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8841 06-1 884787 bp Feature: gene Location: 1885248-1885748 bp Ori: QGO56109.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1885320-1885593 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 885320-1 885593 bp Feature: gene Location: 1886270-1886932 bp Ori: QGO56110.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1886318-1886894 bp Feature: domain Description: beta_CA_cladeB Location: 1 88631 8-1 886894 bp Feature: gene Location: 2011655-2012191 bp Feature: gene Location: 2012353-2013168 bp Ori: QGO56235.1 Feature: domain Description: Y2_Tnp Location: 2012440-2012941 bp Feature: domain Description: Y2_Tnp Location: 201 2440-201 2941 bp Feature: gene Location: 2013577-2014899 bp Ori: QGO56236.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2013859-2014540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 3859-201 4540 bp Feature: gene Location: 2015001-2015399 bp Ori: QGO56237.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2015013-2015244 bp Feature: domain Description: Zn_Tnp_IS91 Location: 201 501 3-201 5244 bp Feature: gene Location: 2015588-2016145 bp Feature: gene Location: 2183822-2184658 bp Ori: QGO56400.1 Feature: domain Description: HTH_21 Location: 2183945-2184098 bp Feature: domain Description: HTH_21 Location: 21 83945-21 84098 bp Feature: domain Description: Tra5 Location: 2184146-2184626 bp Feature: domain Description: Tra5 Location: 21 841 46-21 84626 bp Feature: gene Location: 2184670-2184942 bp Ori: QGO56401.1 Feature: domain Description: HTH_Tnp_1 Location: 2184679-2184883 bp Feature: domain Description: HTH_Tnp_1 Location: 21 84679-21 84883 bp Feature: gene Location: 2185971-2186957 bp Ori: QGO56402.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2186253-2186931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 86253-21 86931 bp Feature: gene Location: 2187338-2188153 bp Ori: QGO56403.1 Feature: domain Description: Y2_Tnp Location: 2187425-2187923 bp Feature: domain Description: Y2_Tnp Location: 21 87425-21 87923 bp Feature: gene Location: 2320263-2321324 bp Ori: QGO56533.1 Feature: domain Description: DDE_5 Location: 2320284-2320875 bp Feature: domain Description: DDE_5 Location: 2320284-2320875 bp Feature: gene Location: 2321372-2321692 bp Ori: QGO56534.1 Feature: domain Description: HATPase_c_2 Location: 2321396-2321675 bp Feature: domain Description: HATPase_c_2 Location: 2321 396-2321 675 bp Feature: gene Location: 2322662-2323363 bp Ori: QGO56535.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2322668-2322986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2322668-2322986 bp Feature: gene Location: 2324071-2325033 bp Ori: QGO56536.1 Feature: domain Description: MDR_like_2 Location: 2324074-2325013 bp Feature: domain Description: MDR_like_2 Location: 2324074-232501 3 bp Feature: gene Location: 2325253-2326248 bp Ori: QGO56537.1 Feature: domain Description: MoxR Location: 2325304-2326246 bp Feature: domain Description: MoxR Location: 2325304-2326246 bp Feature: gene Location: 2414808-2415335 bp Feature: gene Location: 2415421-2415819 bp Ori: QGO56627.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2415433-2415664 bp Feature: domain Description: Zn_Tnp_IS91 Location: 241 5433-241 5664 bp Feature: gene Location: 2415921-2416478 bp Ori: QGO56628.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2415927-2416119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 5927-241 61 1 9 bp Feature: gene Location: 2416596-2416961 bp Ori: QGO56629.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2416611-2416950 bp Feature: domain Description: HTH_Tnp_IS630 Location: 241 661 1 -241 6950 bp Feature: gene Location: 2417033-2417482 bp Ori: QGO56630.1 Feature: domain Description: DDE_3 Location: 2417045-2417405 bp Feature: domain Description: DDE_3 Location: 241 7045-241 7405 bp Feature: gene Location: 3137097-3137312 bp Ori: QGO57368.1 Feature: domain Description: COG2958 Location: 3137100-3137307 bp Feature: domain Description: COG2958 Location: 31 371 00-31 37307 bp Feature: gene Location: 3137711-3138106 bp Ori: QGO57369.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3137798-3137990 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31 37798-31 37990 bp Feature: gene Location: 3138318-3139637 bp Ori: QGO57370.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3138600-3139278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 38600-31 39278 bp Feature: gene Location: 3140334-3140585 bp Feature: gene Location: 3140861-3141226 bp Ori: QGO57372.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3140876-3141215 bp Feature: domain Description: HTH_Tnp_IS630 Location: 31 40876-31 41 21 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), Y2_Tnp (pfam04986), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), Zn_Tnp_IS91 (pfam14319), InsE (COG2963), HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884)
DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), DDE_3 (pfam13358), COG2958 (Uncharacterized protein )

Seq: CP039033.1 Piscirickettsia salmonis strain Psal-070 plasmid unnamed1, complete sequence (108848 bp)
Overview 1 RT 1: 32882-36779 bp 2 RT 2: 102368-107842 bp Neighborhood of RT #1 [32882, 37093] PHA02517 InsE RVT-GII Y2_Tnp HTH_3 Neighborhood of RT #2 [102368, 107883] Zn_Tnp_IS91 PHA02517 RVT-GII InsE Y2_Tnp Phage_integrase Feature: gene Location: 32882-33694 bp Ori: QGO57439.1 Feature: domain Description: PHA02517 Location: 32897-33680 bp Feature: domain Description: PHA02 517 Location: 32 897-33680 bp Feature: gene Location: 33742-34035 bp Ori: QGO57440.1 Feature: domain Description: InsE Location: 33748-34027 bp Feature: domain Description: InsE Location: 33748-3402 7 bp Feature: gene Location: 34056-34763 bp Ori: QGO57441.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34338-34728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34338-3472 8 bp Feature: gene Location: 35172-35696 bp Ori: QGO57442.1 Feature: domain Description: Y2_Tnp Location: 35259-35655 bp Feature: domain Description: Y2 _Tnp Location: 352 59-35655 bp Feature: gene Location: 36629-37093 bp Ori: QGO57443.1 Feature: domain Description: HTH_3 Location: 36638-36779 bp Feature: domain Description: HTH_3 Location: 36638-36779 bp Feature: gene Location: 102368-102868 bp Ori: QGO57537.1 Feature: domain Description: Zn_Tnp_IS91 Location: 102440-102713 bp Feature: domain Description: Zn_Tnp_IS91 Location: 102 440-102 713 bp Feature: gene Location: 103296-104108 bp Ori: QGO57538.1 Feature: domain Description: PHA02517 Location: 103311-104094 bp Feature: domain Description: PHA02 517 Location: 103311-104094 bp Feature: gene Location: 104156-105535 bp Ori: QGO57539.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104438-105116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104438-105116 bp Feature: domain Description: InsE Location: 105254-105527 bp Feature: domain Description: InsE Location: 1052 54-10552 7 bp Feature: gene Location: 106232-107047 bp Ori: QGO57540.1 Feature: domain Description: Y2_Tnp Location: 106319-106817 bp Feature: domain Description: Y2 _Tnp Location: 106319-106817 bp Feature: gene Location: 107293-107883 bp Ori: QGO57541.1 Feature: domain Description: Phage_integrase Location: 107320-107842 bp Feature: domain Description: Phage_integrase Location: 10732 0-107842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, Y2_Tnp (pfam04986), HTH_3 (pfam01381), Zn_Tnp_IS91 (pfam14319), Phage_integrase (pfam00589)