myRT

myRT report for GCA_009708975.1_ASM970897v1

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Seq: CP039035.1 Piscirickettsia salmonis strain Psal-071 chromosome, complete genome (3153564 bp)
Overview 1 RT 1: 908426-911101 bp 2 RT 2: 1130687-1136821 bp 3 RT 3: 1291353-1300929 bp 4 RT 4: 1823556-1828045 bp 5 RT 5: 1937672-1946188 bp 6 RT 6: 2076803-2083063 bp 7 RT 7: 3128905-3133018 bp Neighborhood of RT #1 [908426, 911101] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1130687, 1136829] HTH_Tnp_IS630 Y2_Tnp RVT-GII HTH_Tnp_IS630 DDE_3 RVT-GII PHA02517 InsE Neighborhood of RT #3 [1291353, 1300955] AcrB Y2_Tnp RVT-GII Rve VI_chp_5 Neighborhood of RT #4 [1823556, 1828045] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #5 [1937672, 1946418] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII DDE_3 PHA02517 HTH_23 RVT-GII Y2_Tnp Neighborhood of RT #6 [2076803, 2083065] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #7 [3128905, 3133248] COG2958 Zn_Tnp_IS91 RVT-GII Y2_Tnp Feature: gene Location: 908426-908875 bp Ori: QGO58569.1 Feature: domain Description: DDE_3 Location: 908438-908798 bp Feature: domain Description: DDE_3 Location: 908438-908798 bp Feature: gene Location: 908947-909312 bp Ori: QGO58570.1 Feature: domain Description: HTH_Tnp_IS630 Location: 908962-909301 bp Feature: domain Description: HTH_Tnp_IS630 Location: 908962-909301 bp Feature: gene Location: 909430-910005 bp Ori: QGO58571.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909436-909628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909436-909628 bp Feature: gene Location: 910090-910488 bp Ori: QGO58572.1 Feature: domain Description: Zn_Tnp_IS91 Location: 910102-910333 bp Feature: domain Description: Zn_Tnp_IS91 Location: 91 01 02-91 0333 bp Feature: gene Location: 910574-911101 bp Feature: gene Location: 1130687-1131052 bp Ori: QGO58789.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1130702-1131041 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 1 30702-1 1 31 041 bp Feature: gene Location: 1131074-1131403 bp Ori: QGO58790.1 Feature: domain Description: Y2_Tnp Location: 1131161-1131308 bp Feature: domain Description: Y2_Tnp Location: 1 1 31 1 61 -1 1 31 308 bp Feature: gene Location: 1131812-1133134 bp Ori: QGO58791.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1132094-1132775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 32094-1 1 32775 bp Feature: gene Location: 1133665-1134030 bp Ori: QGO58792.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1133680-1134019 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 1 33680-1 1 3401 9 bp Feature: gene Location: 1134102-1134551 bp Ori: QGO58793.1 Feature: domain Description: DDE_3 Location: 1134114-1134474 bp Feature: domain Description: DDE_3 Location: 1 1 341 1 4-1 1 34474 bp Feature: gene Location: 1135059-1135667 bp Ori: QGO58794.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1135260-1135653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 35260-1 1 35653 bp Feature: gene Location: 1135676-1136488 bp Ori: QGO58795.1 Feature: domain Description: PHA02517 Location: 1135691-1136474 bp Feature: domain Description: PHA0251 7 Location: 1 1 35691 -1 1 36474 bp Feature: gene Location: 1136536-1136829 bp Ori: QGO58796.1 Feature: domain Description: InsE Location: 1136542-1136821 bp Feature: domain Description: InsE Location: 1 1 36542-1 1 36821 bp Feature: gene Location: 1291353-1294433 bp Ori: QGO58950.1 Gene: bepE_3 Feature: domain Description: AcrB Location: 1291362-1294374 bp Feature: domain Description: AcrB Location: 1 291 362-1 294374 bp Feature: gene Location: 1294732-1295547 bp Ori: QGO58951.1 Feature: domain Description: Y2_Tnp Location: 1294819-1295320 bp Feature: domain Description: Y2_Tnp Location: 1 29481 9-1 295320 bp Feature: gene Location: 1295956-1297278 bp Ori: QGO58952.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1296238-1296919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 296238-1 29691 9 bp Feature: gene Location: 1298187-1298831 bp Ori: QGO58953.1 Feature: domain Description: Rve Location: 1298229-1298808 bp Feature: domain Description: Rve Location: 1 298229-1 298808 bp Feature: gene Location: 1300449-1300955 bp Ori: QGO58954.1 Feature: domain Description: VI_chp_5 Location: 1300461-1300929 bp Feature: domain Description: VI_chp_5 Location: 1 300461 -1 300929 bp Feature: gene Location: 1823556-1824113 bp Feature: gene Location: 1824302-1824700 bp Ori: QGO59477.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1824314-1824545 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 82431 4-1 824545 bp Feature: gene Location: 1824756-1826123 bp Ori: QGO59478.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1825038-1825719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 825038-1 82571 9 bp Feature: gene Location: 1826532-1827347 bp Ori: QGO59479.1 Feature: domain Description: Y2_Tnp Location: 1826619-1827120 bp Feature: domain Description: Y2_Tnp Location: 1 82661 9-1 8271 20 bp Feature: gene Location: 1827509-1828045 bp Feature: gene Location: 1937672-1938334 bp Ori: QGO59581.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1937720-1938296 bp Feature: domain Description: beta_CA_cladeB Location: 1 937720-1 938296 bp Feature: gene Location: 1938856-1939356 bp Ori: QGO59582.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1938928-1939201 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 938928-1 939201 bp Feature: gene Location: 1939458-1940660 bp Ori: QGO59583.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1939620-1940298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 939620-1 940298 bp Feature: gene Location: 1940766-1941068 bp Feature: gene Location: 1941453-1941902 bp Ori: QGO59585.1 Feature: domain Description: DDE_3 Location: 1941465-1941825 bp Feature: domain Description: DDE_3 Location: 1 941 465-1 941 825 bp Feature: gene Location: 1942422-1943234 bp Ori: QGO59587.1 Feature: domain Description: PHA02517 Location: 1942437-1943220 bp Feature: domain Description: PHA0251 7 Location: 1 942437-1 943220 bp Feature: gene Location: 1943243-1943587 bp Ori: QGO59588.1 Feature: domain Description: HTH_23 Location: 1943261-1943372 bp Feature: domain Description: HTH_23 Location: 1 943261 -1 943372 bp Feature: gene Location: 1943872-1945194 bp Ori: QGO59589.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1944154-1944835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9441 54-1 944835 bp Feature: gene Location: 1945603-1946418 bp Ori: QGO59590.1 Feature: domain Description: Y2_Tnp Location: 1945690-1946188 bp Feature: domain Description: Y2_Tnp Location: 1 945690-1 9461 88 bp Feature: gene Location: 2076803-2077864 bp Ori: QGO59724.1 Feature: domain Description: DDE_5 Location: 2076824-2077415 bp Feature: domain Description: DDE_5 Location: 2076824-207741 5 bp Feature: gene Location: 2077912-2078232 bp Ori: QGO59725.1 Feature: domain Description: HATPase_c_2 Location: 2077936-2078215 bp Feature: domain Description: HATPase_c_2 Location: 2077936-207821 5 bp Feature: gene Location: 2079173-2079904 bp Ori: QGO59726.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2079179-2079497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20791 79-2079497 bp Feature: gene Location: 2080900-2081862 bp Ori: QGO59727.1 Feature: domain Description: MDR_like_2 Location: 2080903-2081842 bp Feature: domain Description: MDR_like_2 Location: 2080903-2081 842 bp Feature: gene Location: 2082070-2083065 bp Ori: QGO59728.1 Feature: domain Description: MoxR Location: 2082121-2083063 bp Feature: domain Description: MoxR Location: 20821 21 -2083063 bp Feature: gene Location: 3128905-3129120 bp Ori: QGO60822.1 Feature: domain Description: COG2958 Location: 3128908-3129115 bp Feature: domain Description: COG2958 Location: 31 28908-31 291 1 5 bp Feature: gene Location: 3129519-3129914 bp Ori: QGO60823.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3129606-3129798 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31 29606-31 29798 bp Feature: gene Location: 3130126-3131448 bp Ori: QGO60824.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3130408-3131089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 30408-31 31 089 bp Feature: gene Location: 3132145-3132396 bp Feature: gene Location: 3132541-3133248 bp Ori: QGO60826.1 Feature: domain Description: Y2_Tnp Location: 3132577-3133018 bp Feature: domain Description: Y2_Tnp Location: 31 32577-31 3301 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), AcrB (COG0841), Rve (COG3316), VI_chp_5 (TIGR03358)
beta_CA_cladeB (cd00884), HTH_23 (pfam13384), DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), COG2958 (Uncharacterized protein )

Seq: CP039036.1 Piscirickettsia salmonis strain Psal-071 plasmid unnamed1, complete sequence (168857 bp)
Overview 1 RT 1: 26109-31469 bp 2 RT 2: 76083-79011 bp 3 RT 3: 83812-88162 bp 4 RT 4: 121686-126233 bp Neighborhood of RT #1 [26109, 31783] PHA02517 InsE RVT-GII group_II_RT_mat RVT-GII RVT-GII Y2_Tnp HTH_3 Neighborhood of RT #2 [76083, 79025] Zn_Tnp_IS91 group_II_RT_mat RVT-GII InsE PHA02517 Neighborhood of RT #3 [83812, 88176] Y2_Tnp Zn_Tnp_IS91 RVT-GII InsE PHA02517 Neighborhood of RT #4 [121686, 126274] PHA02517 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 26109-26921 bp Ori: QGO60885.1 Feature: domain Description: PHA02517 Location: 26124-26907 bp Feature: domain Description: PHA02 517 Location: 2 612 4-2 6907 bp Feature: gene Location: 26969-27262 bp Ori: QGO60886.1 Feature: domain Description: InsE Location: 26975-27254 bp Feature: domain Description: InsE Location: 2 6975-2 72 54 bp Feature: gene Location: 27283-27990 bp Ori: QGO60887.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27565-27955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7565-2 7955 bp Feature: gene Location: 28374-28871 bp Ori: QGO60888.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 28380-28731 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 8380-2 8731 bp Feature: gene Location: 28868-29332 bp Ori: QGO60889.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28886-29330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8886-2 9330 bp Feature: gene Location: 29301-29741 bp Ori: QGO60890.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29583-29733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9583-2 9733 bp Feature: gene Location: 30150-30965 bp Ori: QGO60891.1 Feature: domain Description: Y2_Tnp Location: 30237-30735 bp Feature: domain Description: Y2 _Tnp Location: 302 37-30735 bp Feature: gene Location: 31319-31783 bp Ori: QGO60892.1 Feature: domain Description: HTH_3 Location: 31328-31469 bp Feature: domain Description: HTH_3 Location: 3132 8-31469 bp Feature: gene Location: 76083-76481 bp Ori: QGO60964.1 Feature: domain Description: Zn_Tnp_IS91 Location: 76095-76326 bp Feature: domain Description: Zn_Tnp_IS91 Location: 76095-7632 6 bp Feature: gene Location: 76537-77034 bp Ori: QGO60965.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 76543-76894 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 76543-76894 bp Feature: gene Location: 77031-77807 bp Ori: QGO60966.1 Gene: ltrA_11 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77217-77805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772 17-77805 bp Feature: gene Location: 77812-78165 bp Ori: QGO60967.1 Feature: domain Description: InsE Location: 77884-78157 bp Feature: domain Description: InsE Location: 77884-78157 bp Feature: gene Location: 78213-79025 bp Ori: QGO60968.1 Feature: domain Description: PHA02517 Location: 78228-79011 bp Feature: domain Description: PHA02 517 Location: 782 2 8-79011 bp Feature: gene Location: 83812-84837 bp Ori: QGO60974.1 Feature: domain Description: Y2_Tnp Location: 84067-84607 bp Feature: domain Description: Y2 _Tnp Location: 84067-84607 bp Feature: gene Location: 85573-86073 bp Ori: QGO60975.1 Feature: domain Description: Zn_Tnp_IS91 Location: 85645-85918 bp Feature: domain Description: Zn_Tnp_IS91 Location: 85645-85918 bp Feature: gene Location: 86335-86925 bp Ori: QGO60976.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86338-86746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86338-86746 bp Feature: gene Location: 86988-87281 bp Ori: QGO60977.1 Feature: domain Description: InsE Location: 86994-87273 bp Feature: domain Description: InsE Location: 86994-872 73 bp Feature: gene Location: 87364-88176 bp Ori: QGO60978.1 Feature: domain Description: PHA02517 Location: 87379-88162 bp Feature: domain Description: PHA02 517 Location: 87379-88162 bp Feature: gene Location: 121686-122498 bp Ori: QGO61022.1 Feature: domain Description: PHA02517 Location: 121701-122484 bp Feature: domain Description: PHA02 517 Location: 12 1701-12 2 484 bp Feature: gene Location: 122546-122839 bp Ori: QGO61023.1 Feature: domain Description: InsE Location: 122552-122831 bp Feature: domain Description: InsE Location: 12 2 552 -12 2 831 bp Feature: gene Location: 122799-123926 bp Ori: QGO61024.1 Gene: ltrA_12 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123081-123759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 3081-12 3759 bp Feature: gene Location: 124623-125438 bp Ori: QGO61025.1 Feature: domain Description: Y2_Tnp Location: 124710-125208 bp Feature: domain Description: Y2 _Tnp Location: 12 4710-12 52 08 bp Feature: gene Location: 125684-126274 bp Ori: QGO61026.1 Feature: domain Description: Phage_integrase Location: 125711-126233 bp Feature: domain Description: Phage_integrase Location: 12 5711-12 62 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), Y2_Tnp (pfam04986), HTH_3 (pfam01381), Zn_Tnp_IS91 (pfam14319), Phage_integrase (pfam00589)