myRT

myRT report for GCA_009708995.1_ASM970899v1

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Seq: CP039040.1 Piscirickettsia salmonis strain Psal-072 chromosome, complete genome (3139871 bp)
Overview 1 RT 1: 908427-911102 bp 2 RT 2: 1130688-1136822 bp 3 RT 3: 1291354-1300930 bp 4 RT 4: 1823577-1828066 bp 5 RT 5: 1923980-1932496 bp 6 RT 6: 2063111-2069371 bp 7 RT 7: 3115212-3119325 bp Neighborhood of RT #1 [908427, 911102] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1130688, 1136830] HTH_Tnp_IS630 Y2_Tnp RVT-GII HTH_Tnp_IS630 DDE_3 RVT-GII PHA02517 InsE Neighborhood of RT #3 [1291354, 1300956] AcrB Y2_Tnp RVT-GII Rve VI_chp_5 Neighborhood of RT #4 [1823577, 1828066] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #5 [1923980, 1932726] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII DDE_3 PHA02517 HTH_23 RVT-GII Y2_Tnp Neighborhood of RT #6 [2063111, 2069373] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #7 [3115212, 3119555] COG2958 Zn_Tnp_IS91 RVT-GII Y2_Tnp Feature: gene Location: 908427-908876 bp Ori: QGO62158.1 Feature: domain Description: DDE_3 Location: 908439-908799 bp Feature: domain Description: DDE_3 Location: 908439-908799 bp Feature: gene Location: 908948-909313 bp Ori: QGO62159.1 Feature: domain Description: HTH_Tnp_IS630 Location: 908963-909302 bp Feature: domain Description: HTH_Tnp_IS630 Location: 908963-909302 bp Feature: gene Location: 909431-910006 bp Ori: QGO62160.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909437-909629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 909437-909629 bp Feature: gene Location: 910091-910489 bp Ori: QGO62161.1 Feature: domain Description: Zn_Tnp_IS91 Location: 910103-910334 bp Feature: domain Description: Zn_Tnp_IS91 Location: 91 01 03-91 0334 bp Feature: gene Location: 910575-911102 bp Feature: gene Location: 1130688-1131053 bp Ori: QGO62378.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1130703-1131042 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 1 30703-1 1 31 042 bp Feature: gene Location: 1131075-1131404 bp Ori: QGO62379.1 Feature: domain Description: Y2_Tnp Location: 1131162-1131309 bp Feature: domain Description: Y2_Tnp Location: 1 1 31 1 62-1 1 31 309 bp Feature: gene Location: 1131813-1133135 bp Ori: QGO62380.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1132095-1132776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 32095-1 1 32776 bp Feature: gene Location: 1133666-1134031 bp Ori: QGO62381.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1133681-1134020 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 1 33681 -1 1 34020 bp Feature: gene Location: 1134103-1134552 bp Ori: QGO62382.1 Feature: domain Description: DDE_3 Location: 1134115-1134475 bp Feature: domain Description: DDE_3 Location: 1 1 341 1 5-1 1 34475 bp Feature: gene Location: 1135060-1135668 bp Ori: QGO62383.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1135261-1135654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 35261 -1 1 35654 bp Feature: gene Location: 1135677-1136489 bp Ori: QGO62384.1 Feature: domain Description: PHA02517 Location: 1135692-1136475 bp Feature: domain Description: PHA0251 7 Location: 1 1 35692-1 1 36475 bp Feature: gene Location: 1136537-1136830 bp Ori: QGO62385.1 Feature: domain Description: InsE Location: 1136543-1136822 bp Feature: domain Description: InsE Location: 1 1 36543-1 1 36822 bp Feature: gene Location: 1291354-1294434 bp Ori: QGO62539.1 Gene: bepE_3 Feature: domain Description: AcrB Location: 1291363-1294375 bp Feature: domain Description: AcrB Location: 1 291 363-1 294375 bp Feature: gene Location: 1294733-1295548 bp Ori: QGO62540.1 Feature: domain Description: Y2_Tnp Location: 1294820-1295321 bp Feature: domain Description: Y2_Tnp Location: 1 294820-1 295321 bp Feature: gene Location: 1295957-1297279 bp Ori: QGO62541.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1296239-1296920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 296239-1 296920 bp Feature: gene Location: 1298188-1298832 bp Ori: QGO62542.1 Feature: domain Description: Rve Location: 1298230-1298809 bp Feature: domain Description: Rve Location: 1 298230-1 298809 bp Feature: gene Location: 1300450-1300956 bp Ori: QGO62543.1 Feature: domain Description: VI_chp_5 Location: 1300462-1300930 bp Feature: domain Description: VI_chp_5 Location: 1 300462-1 300930 bp Feature: gene Location: 1823577-1824134 bp Feature: gene Location: 1824323-1824721 bp Ori: QGO63067.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1824335-1824566 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 824335-1 824566 bp Feature: gene Location: 1824777-1826144 bp Ori: QGO63068.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1825059-1825740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 825059-1 825740 bp Feature: gene Location: 1826553-1827368 bp Ori: QGO63069.1 Feature: domain Description: Y2_Tnp Location: 1826640-1827141 bp Feature: domain Description: Y2_Tnp Location: 1 826640-1 8271 41 bp Feature: gene Location: 1827530-1828066 bp Feature: gene Location: 1923980-1924642 bp Ori: QGO63161.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1924028-1924604 bp Feature: domain Description: beta_CA_cladeB Location: 1 924028-1 924604 bp Feature: gene Location: 1925164-1925664 bp Ori: QGO63162.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1925236-1925509 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 925236-1 925509 bp Feature: gene Location: 1925766-1926968 bp Ori: QGO63163.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1925928-1926606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 925928-1 926606 bp Feature: gene Location: 1927074-1927376 bp Feature: gene Location: 1927761-1928210 bp Ori: QGO63165.1 Feature: domain Description: DDE_3 Location: 1927773-1928133 bp Feature: domain Description: DDE_3 Location: 1 927773-1 9281 33 bp Feature: gene Location: 1928730-1929542 bp Ori: QGO63167.1 Feature: domain Description: PHA02517 Location: 1928745-1929528 bp Feature: domain Description: PHA0251 7 Location: 1 928745-1 929528 bp Feature: gene Location: 1929551-1929895 bp Ori: QGO63168.1 Feature: domain Description: HTH_23 Location: 1929569-1929680 bp Feature: domain Description: HTH_23 Location: 1 929569-1 929680 bp Feature: gene Location: 1930180-1931502 bp Ori: QGO63169.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1930462-1931143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 930462-1 931 1 43 bp Feature: gene Location: 1931911-1932726 bp Ori: QGO63170.1 Feature: domain Description: Y2_Tnp Location: 1931998-1932496 bp Feature: domain Description: Y2_Tnp Location: 1 931 998-1 932496 bp Feature: gene Location: 2063111-2064172 bp Ori: QGO63304.1 Feature: domain Description: DDE_5 Location: 2063132-2063723 bp Feature: domain Description: DDE_5 Location: 20631 32-2063723 bp Feature: gene Location: 2064220-2064540 bp Ori: QGO63305.1 Feature: domain Description: HATPase_c_2 Location: 2064244-2064523 bp Feature: domain Description: HATPase_c_2 Location: 2064244-2064523 bp Feature: gene Location: 2065481-2066212 bp Ori: QGO63306.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2065487-2065805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2065487-2065805 bp Feature: gene Location: 2067208-2068170 bp Ori: QGO63307.1 Feature: domain Description: MDR_like_2 Location: 2067211-2068150 bp Feature: domain Description: MDR_like_2 Location: 206721 1 -20681 50 bp Feature: gene Location: 2068378-2069373 bp Ori: QGO63308.1 Feature: domain Description: MoxR Location: 2068429-2069371 bp Feature: domain Description: MoxR Location: 2068429-2069371 bp Feature: gene Location: 3115212-3115427 bp Ori: QGO64401.1 Feature: domain Description: COG2958 Location: 3115215-3115422 bp Feature: domain Description: COG2958 Location: 31 1 521 5-31 1 5422 bp Feature: gene Location: 3115826-3116221 bp Ori: QGO64402.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3115913-3116105 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31 1 591 3-31 1 61 05 bp Feature: gene Location: 3116433-3117755 bp Ori: QGO64403.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3116715-3117396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 671 5-31 1 7396 bp Feature: gene Location: 3118452-3118703 bp Feature: gene Location: 3118848-3119555 bp Ori: QGO64405.1 Feature: domain Description: Y2_Tnp Location: 3118884-3119325 bp Feature: domain Description: Y2_Tnp Location: 31 1 8884-31 1 9325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), AcrB (COG0841), Rve (COG3316), VI_chp_5 (TIGR03358)
beta_CA_cladeB (cd00884), HTH_23 (pfam13384), DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), COG2958 (Uncharacterized protein )

Seq: CP039041.1 Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence (251458 bp)
Overview 1 RT 1: 28336-32825 bp Neighborhood of RT #1 [28336, 32825] Zn_Tnp_IS91 RVT-GII Y2_Tnp Feature: gene Location: 28336-28893 bp Feature: gene Location: 29082-29480 bp Ori: QGO64456.1 Feature: domain Description: Zn_Tnp_IS91 Location: 29094-29325 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 9094-2 932 5 bp Feature: gene Location: 29536-30903 bp Ori: QGO64457.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29818-30499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9818-30499 bp Feature: gene Location: 31312-32127 bp Ori: QGO64458.1 Feature: domain Description: Y2_Tnp Location: 31399-31900 bp Feature: domain Description: Y2 _Tnp Location: 31399-31900 bp Feature: gene Location: 32289-32825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), RVT-GII, Y2_Tnp (pfam04986)

Seq: CP039042.1 Piscirickettsia salmonis strain Psal-072 plasmid unnamed2, complete sequence (192523 bp)
Overview 1 RT 1: 26109-31469 bp 2 RT 2: 76083-79011 bp 3 RT 3: 83812-88162 bp 4 RT 4: 121686-126233 bp Neighborhood of RT #1 [26109, 31783] PHA02517 InsE RVT-GII group_II_RT_mat RVT-GII RVT-GII Y2_Tnp HTH_3 Neighborhood of RT #2 [76083, 79025] Zn_Tnp_IS91 group_II_RT_mat RVT-GII InsE PHA02517 Neighborhood of RT #3 [83812, 88176] Y2_Tnp Zn_Tnp_IS91 RVT-GII InsE PHA02517 Neighborhood of RT #4 [121686, 126274] PHA02517 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 26109-26921 bp Ori: QGO64709.1 Feature: domain Description: PHA02517 Location: 26124-26907 bp Feature: domain Description: PHA02517 Location: 26124-26907 bp Feature: gene Location: 26969-27262 bp Ori: QGO64710.1 Feature: domain Description: InsE Location: 26975-27254 bp Feature: domain Description: InsE Location: 26975-27254 bp Feature: gene Location: 27283-27990 bp Ori: QGO64711.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27565-27955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27565-27955 bp Feature: gene Location: 28374-28871 bp Ori: QGO64712.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 28380-28731 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 283 80-2873 1 bp Feature: gene Location: 28868-29332 bp Ori: QGO64713.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28886-29330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28886-293 3 0 bp Feature: gene Location: 29301-29741 bp Ori: QGO64714.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29583-29733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29583 -2973 3 bp Feature: gene Location: 30150-30965 bp Ori: QGO64715.1 Feature: domain Description: Y2_Tnp Location: 30237-30735 bp Feature: domain Description: Y2_Tnp Location: 3 023 7-3 073 5 bp Feature: gene Location: 31319-31783 bp Ori: QGO64716.1 Feature: domain Description: HTH_3 Location: 31328-31469 bp Feature: domain Description: HTH_3 Location: 3 13 28-3 1469 bp Feature: gene Location: 76083-76481 bp Ori: QGO64788.1 Feature: domain Description: Zn_Tnp_IS91 Location: 76095-76326 bp Feature: domain Description: Zn_Tnp_IS91 Location: 76095-763 26 bp Feature: gene Location: 76537-77034 bp Ori: QGO64789.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 76543-76894 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 76543 -76894 bp Feature: gene Location: 77031-77807 bp Ori: QGO64790.1 Gene: ltrA_11 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77217-77805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77217-77805 bp Feature: gene Location: 77812-78165 bp Ori: QGO64791.1 Feature: domain Description: InsE Location: 77884-78157 bp Feature: domain Description: InsE Location: 77884-78157 bp Feature: gene Location: 78213-79025 bp Ori: QGO64792.1 Feature: domain Description: PHA02517 Location: 78228-79011 bp Feature: domain Description: PHA02517 Location: 78228-79011 bp Feature: gene Location: 83812-84837 bp Ori: QGO64798.1 Feature: domain Description: Y2_Tnp Location: 84067-84607 bp Feature: domain Description: Y2_Tnp Location: 84067-84607 bp Feature: gene Location: 85573-86073 bp Ori: QGO64799.1 Feature: domain Description: Zn_Tnp_IS91 Location: 85645-85918 bp Feature: domain Description: Zn_Tnp_IS91 Location: 85645-85918 bp Feature: gene Location: 86335-86925 bp Ori: QGO64800.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86338-86746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863 3 8-86746 bp Feature: gene Location: 86988-87281 bp Ori: QGO64801.1 Feature: domain Description: InsE Location: 86994-87273 bp Feature: domain Description: InsE Location: 86994-87273 bp Feature: gene Location: 87364-88176 bp Ori: QGO64802.1 Feature: domain Description: PHA02517 Location: 87379-88162 bp Feature: domain Description: PHA02517 Location: 873 79-88162 bp Feature: gene Location: 121686-122498 bp Ori: QGO64846.1 Feature: domain Description: PHA02517 Location: 121701-122484 bp Feature: domain Description: PHA02517 Location: 121701-122484 bp Feature: gene Location: 122546-122839 bp Ori: QGO64847.1 Feature: domain Description: InsE Location: 122552-122831 bp Feature: domain Description: InsE Location: 122552-12283 1 bp Feature: gene Location: 122799-123926 bp Ori: QGO64848.1 Gene: ltrA_12 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123081-123759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 081-123 759 bp Feature: gene Location: 124623-125438 bp Ori: QGO64849.1 Feature: domain Description: Y2_Tnp Location: 124710-125208 bp Feature: domain Description: Y2_Tnp Location: 124710-125208 bp Feature: gene Location: 125684-126274 bp Ori: QGO64850.1 Feature: domain Description: Phage_integrase Location: 125711-126233 bp Feature: domain Description: Phage_integrase Location: 125711-12623 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), Y2_Tnp (pfam04986), HTH_3 (pfam01381), Zn_Tnp_IS91 (pfam14319), Phage_integrase (pfam00589)