myRT

myRT report for GCA_009709075.1_ASM970907v1

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Seq: CP039065.1 Piscirickettsia salmonis strain Psal-107 chromosome, complete genome (3052624 bp)
Overview 1 RT 1: 1034007-1038567 bp 2 RT 2: 1158931-1163227 bp 3 RT 3: 1280246-1284735 bp 4 RT 4: 1956461-1959426 bp 5 RT 5: 2175723-2178319 bp Neighborhood of RT #1 [1034007, 1038584] MoxR MDR_like_2 RVT-GII Zn_Tnp_IS91 HATPase_c_2 Neighborhood of RT #2 [1158931, 1163265] Y2_Tnp RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #3 [1280246, 1284735] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #4 [1956461, 1959437] InsE PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #5 [2175723, 2178396] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Feature: gene Location: 1034007-1035002 bp Ori: QGO80087.1 Feature: domain Description: MoxR Location: 1034058-1035000 bp Feature: domain Description: MoxR Location: 1 034058-1 035000 bp Feature: gene Location: 1035210-1036172 bp Ori: QGO80088.1 Feature: domain Description: MDR_like_2 Location: 1035213-1036152 bp Feature: domain Description: MDR_like_2 Location: 1 03521 3-1 0361 52 bp Feature: gene Location: 1036880-1037611 bp Ori: QGO80089.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036886-1037204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 036886-1 037204 bp Feature: gene Location: 1037667-1038167 bp Ori: QGO80090.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1037739-1038012 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 037739-1 03801 2 bp Feature: gene Location: 1038264-1038584 bp Ori: QGO80091.1 Feature: domain Description: HATPase_c_2 Location: 1038288-1038567 bp Feature: domain Description: HATPase_c_2 Location: 1 038288-1 038567 bp Feature: gene Location: 1158931-1159746 bp Ori: QGO80207.1 Feature: domain Description: Y2_Tnp Location: 1159018-1159516 bp Feature: domain Description: Y2_Tnp Location: 1 1 5901 8-1 1 5951 6 bp Feature: gene Location: 1160155-1161525 bp Ori: QGO80208.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160437-1161118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 60437-1 1 61 1 1 8 bp Feature: gene Location: 1161581-1162081 bp Ori: QGO80209.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1161653-1161926 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 1 61 653-1 1 61 926 bp Feature: gene Location: 1162603-1163265 bp Ori: QGO80210.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1162651-1163227 bp Feature: domain Description: beta_CA_cladeB Location: 1 1 62651 -1 1 63227 bp Feature: gene Location: 1280246-1280782 bp Feature: gene Location: 1280944-1281759 bp Ori: QGO80323.1 Feature: domain Description: Y2_Tnp Location: 1281031-1281532 bp Feature: domain Description: Y2_Tnp Location: 1 281 031 -1 281 532 bp Feature: gene Location: 1282168-1283535 bp Ori: QGO80324.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1282450-1283131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 282450-1 2831 31 bp Feature: gene Location: 1283591-1283989 bp Ori: QGO80325.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1283603-1283834 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 283603-1 283834 bp Feature: gene Location: 1284178-1284735 bp Feature: gene Location: 1956461-1956754 bp Ori: QGO80986.1 Feature: domain Description: InsE Location: 1956467-1956746 bp Feature: domain Description: InsE Location: 1 956467-1 956746 bp Feature: gene Location: 1956802-1957614 bp Ori: QGO80987.1 Feature: domain Description: PHA02517 Location: 1956817-1957600 bp Feature: domain Description: PHA0251 7 Location: 1 95681 7-1 957600 bp Feature: gene Location: 1957623-1958312 bp Ori: QGO80988.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1957905-1958298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 957905-1 958298 bp Feature: gene Location: 1958721-1959050 bp Ori: QGO80989.1 Feature: domain Description: Y2_Tnp Location: 1958808-1958955 bp Feature: domain Description: Y2_Tnp Location: 1 958808-1 958955 bp Feature: gene Location: 1959072-1959437 bp Ori: QGO80990.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1959087-1959426 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 959087-1 959426 bp Feature: gene Location: 2175723-2176250 bp Feature: gene Location: 2176270-2176734 bp Ori: QGO81199.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2176309-2176579 bp Feature: domain Description: Zn_Tnp_IS91 Location: 21 76309-21 76579 bp Feature: gene Location: 2176790-2177392 bp Ori: QGO81200.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2176796-2176988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 76796-21 76988 bp Feature: gene Location: 2177510-2177875 bp Ori: QGO81201.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2177525-2177864 bp Feature: domain Description: HTH_Tnp_IS630 Location: 21 77525-21 77864 bp Feature: gene Location: 2177947-2178396 bp Ori: QGO81202.1 Feature: domain Description: DDE_3 Location: 2177959-2178319 bp Feature: domain Description: DDE_3 Location: 21 77959-21 7831 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), MDR_like_2 (cd05289), RVT-GII, Zn_Tnp_IS91 (pfam14319), HATPase_c_2 (pfam13581), Y2_Tnp (pfam04986), beta_CA_cladeB (cd00884), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_IS630 (pfam01710)
DDE_3 (pfam13358)

Seq: CP039066.1 Piscirickettsia salmonis strain Psal-107 plasmid unnamed1, complete sequence (158207 bp)
Overview 1 RT 1: 59879-64275 bp 2 RT 2: 79352-82487 bp 3 RT 3: 135151-138892 bp 4 RT 4: 153111-157212 bp Neighborhood of RT #1 [59879, 64334] Rve Zn_Tnp_IS91 RVT-GII Rve Zn_Tnp_IS91 Y2_Tnp Neighborhood of RT #2 [79352, 82501] PHA02517 InsE RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #3 [135151, 138906] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #4 [153111, 157253] DDE_3 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 59879-60613 bp Ori: QGO82161.1 Feature: domain Description: Rve Location: 59921-60539 bp Feature: domain Description: Rve Location: 5992 1-60539 bp Feature: gene Location: 61105-61605 bp Ori: QGO82162.1 Feature: domain Description: Zn_Tnp_IS91 Location: 61177-61450 bp Feature: domain Description: Zn_Tnp_IS91 Location: 61177-61450 bp Feature: gene Location: 61867-62457 bp Ori: QGO82163.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61870-62278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61870-62 2 78 bp Feature: gene Location: 62587-63321 bp Ori: QGO82164.1 Feature: domain Description: Rve Location: 62629-63247 bp Feature: domain Description: Rve Location: 62 62 9-632 47 bp Feature: gene Location: 63543-64334 bp Ori: QGO82165.1 Feature: domain Description: Zn_Tnp_IS91 Location: 63582-63852 bp Feature: domain Description: Zn_Tnp_IS91 Location: 63582 -63852 bp Feature: domain Description: Y2_Tnp Location: 63966-64275 bp Feature: domain Description: Y2 _Tnp Location: 63966-642 75 bp Feature: gene Location: 79352-79945 bp Ori: QGO82181.1 Feature: domain Description: PHA02517 Location: 79367-79919 bp Feature: domain Description: PHA02 517 Location: 79367-79919 bp Feature: gene Location: 79993-80286 bp Ori: QGO82182.1 Feature: domain Description: InsE Location: 79999-80278 bp Feature: domain Description: InsE Location: 79999-802 78 bp Feature: gene Location: 80352-81623 bp Ori: QGO82183.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80538-81219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80538-812 19 bp Feature: gene Location: 81679-82143 bp Ori: QGO82184.1 Feature: domain Description: Zn_Tnp_IS91 Location: 81718-81988 bp Feature: domain Description: Zn_Tnp_IS91 Location: 81718-81988 bp Feature: gene Location: 82163-82501 bp Ori: QGO82185.1 Feature: domain Description: major_cap_HK97 Location: 82226-82487 bp Feature: domain Description: major_cap_HK97 Location: 82 2 2 6-82 487 bp Feature: gene Location: 135151-135615 bp Ori: QGO82263.1 Feature: domain Description: HTH_3 Location: 135160-135301 bp Feature: domain Description: HTH_3 Location: 135160-135301 bp Feature: gene Location: 135969-136718 bp Ori: QGO82264.1 Feature: domain Description: Y2_Tnp Location: 135990-136488 bp Feature: domain Description: Y2 _Tnp Location: 135990-136488 bp Feature: gene Location: 137026-137733 bp Ori: QGO82265.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137308-137698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137308-137698 bp Feature: gene Location: 137672-138046 bp Ori: QGO82266.1 Feature: domain Description: InsE Location: 137765-138038 bp Feature: domain Description: InsE Location: 137765-138038 bp Feature: gene Location: 138094-138906 bp Ori: QGO82267.1 Feature: domain Description: PHA02517 Location: 138109-138892 bp Feature: domain Description: PHA02 517 Location: 138109-138892 bp Feature: gene Location: 153111-153560 bp Ori: QGO82289.1 Feature: domain Description: DDE_3 Location: 153123-153483 bp Feature: domain Description: DDE_3 Location: 15312 3-153483 bp Feature: gene Location: 153564-153818 bp Ori: QGO82290.1 Feature: domain Description: InsE Location: 153570-153816 bp Feature: domain Description: InsE Location: 153570-153816 bp Feature: gene Location: 153778-154905 bp Ori: QGO82291.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154060-154738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154060-154738 bp Feature: gene Location: 155602-156417 bp Ori: QGO82292.1 Feature: domain Description: Y2_Tnp Location: 155689-156187 bp Feature: domain Description: Y2 _Tnp Location: 155689-156187 bp Feature: gene Location: 156663-157253 bp Ori: QGO82293.1 Feature: domain Description: Phage_integrase Location: 156690-157212 bp Feature: domain Description: Phage_integrase Location: 156690-1572 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), Zn_Tnp_IS91 (pfam14319), RVT-GII, Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), DDE_3 (pfam13358), Phage_integrase (pfam00589)