myRT

myRT report for GCA_009709315.1_ASM970931v1

Download annotations/find similar RTs

Seq: CP039182.1 Piscirickettsia salmonis strain Psal-158 plasmid unnamed1, complete sequence (120784 bp)
Overview 1 RT 1: 59879-63682 bp 2 RT 2: 97728-101469 bp 3 RT 3: 115688-119789 bp Neighborhood of RT #1 [59879, 63682] Rve Zn_Tnp_IS91 RVT-GII Rve Neighborhood of RT #2 [97728, 101483] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [115688, 119830] DDE_3 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 59879-60613 bp Ori: QGP24036.1 Feature: domain Description: Rve Location: 59921-60539 bp Feature: domain Description: Rve Location: 59921 -60539 bp Feature: gene Location: 61105-61605 bp Ori: QGP24037.1 Feature: domain Description: Zn_Tnp_IS91 Location: 61177-61450 bp Feature: domain Description: Zn_Tnp_IS91 Location: 61 1 77-61 450 bp Feature: gene Location: 61867-62457 bp Ori: QGP24038.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61870-62278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 870-62278 bp Feature: gene Location: 62587-63321 bp Ori: QGP24039.1 Feature: domain Description: Rve Location: 62629-63247 bp Feature: domain Description: Rve Location: 62629-63247 bp Feature: gene Location: 63284-63682 bp Feature: gene Location: 97728-98192 bp Ori: QGP24092.1 Feature: domain Description: HTH_3 Location: 97737-97878 bp Feature: domain Description: HTH_3 Location: 97737-97878 bp Feature: gene Location: 98546-99295 bp Ori: QGP24093.1 Feature: domain Description: Y2_Tnp Location: 98567-99065 bp Feature: domain Description: Y2_Tnp Location: 98567-99065 bp Feature: gene Location: 99603-100310 bp Ori: QGP24094.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99885-100275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99885-1 00275 bp Feature: gene Location: 100249-100623 bp Ori: QGP24095.1 Feature: domain Description: InsE Location: 100342-100615 bp Feature: domain Description: InsE Location: 1 00342-1 0061 5 bp Feature: gene Location: 100671-101483 bp Ori: QGP24096.1 Feature: domain Description: PHA02517 Location: 100686-101469 bp Feature: domain Description: PHA0251 7 Location: 1 00686-1 01 469 bp Feature: gene Location: 115688-116137 bp Ori: QGP24118.1 Feature: domain Description: DDE_3 Location: 115700-116060 bp Feature: domain Description: DDE_3 Location: 1 1 5700-1 1 6060 bp Feature: gene Location: 116141-116395 bp Ori: QGP24119.1 Feature: domain Description: InsE Location: 116147-116393 bp Feature: domain Description: InsE Location: 1 1 61 47-1 1 6393 bp Feature: gene Location: 116355-117482 bp Ori: QGP24120.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116637-117315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 6637-1 1 731 5 bp Feature: gene Location: 118179-118994 bp Ori: QGP24121.1 Feature: domain Description: Y2_Tnp Location: 118266-118764 bp Feature: domain Description: Y2_Tnp Location: 1 1 8266-1 1 8764 bp Feature: gene Location: 119240-119830 bp Ori: QGP24122.1 Feature: domain Description: Phage_integrase Location: 119267-119789 bp Feature: domain Description: Phage_integrase Location: 1 1 9267-1 1 9789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), Zn_Tnp_IS91 (pfam14319), RVT-GII, HTH_3 (pfam01381), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), DDE_3 (pfam13358), Phage_integrase (pfam00589)

Seq: CP039181.1 Piscirickettsia salmonis strain Psal-158 chromosome, complete genome (3052649 bp)
Overview 1 RT 1: 1034033-1038593 bp 2 RT 2: 1158957-1163253 bp 3 RT 3: 1280272-1284761 bp 4 RT 4: 1956486-1959451 bp 5 RT 5: 2175748-2178344 bp Neighborhood of RT #1 [1034033, 1038610] MoxR MDR_like_2 RVT-GII Zn_Tnp_IS91 HATPase_c_2 Neighborhood of RT #2 [1158957, 1163291] Y2_Tnp RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #3 [1280272, 1284761] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #4 [1956486, 1959462] InsE PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #5 [2175748, 2178421] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Feature: gene Location: 1034033-1035028 bp Ori: QGP21959.1 Feature: domain Description: MoxR Location: 1034084-1035026 bp Feature: domain Description: MoxR Location: 1034084-103502 6 bp Feature: gene Location: 1035236-1036198 bp Ori: QGP21960.1 Feature: domain Description: MDR_like_2 Location: 1035239-1036178 bp Feature: domain Description: MDR_like_2 Location: 10352 39-1036178 bp Feature: gene Location: 1036906-1037637 bp Ori: QGP21961.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036912-1037230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036912 -10372 30 bp Feature: gene Location: 1037693-1038193 bp Ori: QGP21962.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1037765-1038038 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1037765-1038038 bp Feature: gene Location: 1038290-1038610 bp Ori: QGP21963.1 Feature: domain Description: HATPase_c_2 Location: 1038314-1038593 bp Feature: domain Description: HATPase_c_2 Location: 1038314-1038593 bp Feature: gene Location: 1158957-1159772 bp Ori: QGP22079.1 Feature: domain Description: Y2_Tnp Location: 1159044-1159542 bp Feature: domain Description: Y2 _Tnp Location: 1159044-1159542 bp Feature: gene Location: 1160181-1161551 bp Ori: QGP22080.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160463-1161144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160463-1161144 bp Feature: gene Location: 1161607-1162107 bp Ori: QGP22081.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1161679-1161952 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1161679-1161952 bp Feature: gene Location: 1162629-1163291 bp Ori: QGP22082.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1162677-1163253 bp Feature: domain Description: beta_CA_cladeB Location: 1162 677-11632 53 bp Feature: gene Location: 1280272-1280808 bp Feature: gene Location: 1280970-1281785 bp Ori: QGP22195.1 Feature: domain Description: Y2_Tnp Location: 1281057-1281558 bp Feature: domain Description: Y2 _Tnp Location: 12 81057-12 81558 bp Feature: gene Location: 1282194-1283561 bp Ori: QGP22196.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1282476-1283157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 82 476-12 83157 bp Feature: gene Location: 1283617-1284015 bp Ori: QGP22197.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1283629-1283860 bp Feature: domain Description: Zn_Tnp_IS91 Location: 12 8362 9-12 83860 bp Feature: gene Location: 1284204-1284761 bp Feature: gene Location: 1956486-1956779 bp Ori: QGP22858.1 Feature: domain Description: InsE Location: 1956492-1956771 bp Feature: domain Description: InsE Location: 1956492 -1956771 bp Feature: gene Location: 1956827-1957639 bp Ori: QGP22859.1 Feature: domain Description: PHA02517 Location: 1956842-1957625 bp Feature: domain Description: PHA02 517 Location: 1956842 -195762 5 bp Feature: gene Location: 1957648-1958337 bp Ori: QGP22860.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1957930-1958323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1957930-195832 3 bp Feature: gene Location: 1958746-1959075 bp Ori: QGP22861.1 Feature: domain Description: Y2_Tnp Location: 1958833-1958980 bp Feature: domain Description: Y2 _Tnp Location: 1958833-1958980 bp Feature: gene Location: 1959097-1959462 bp Ori: QGP22862.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1959112-1959451 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1959112 -1959451 bp Feature: gene Location: 2175748-2176275 bp Feature: gene Location: 2176361-2176759 bp Ori: QGP23071.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2176373-2176604 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 176373-2 176604 bp Feature: gene Location: 2176815-2177417 bp Ori: QGP23072.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2176821-2177013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 17682 1-2 177013 bp Feature: gene Location: 2177535-2177900 bp Ori: QGP23073.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2177550-2177889 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2 177550-2 177889 bp Feature: gene Location: 2177972-2178421 bp Ori: QGP23074.1 Feature: domain Description: DDE_3 Location: 2177984-2178344 bp Feature: domain Description: DDE_3 Location: 2 177984-2 178344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), MDR_like_2 (cd05289), RVT-GII, Zn_Tnp_IS91 (pfam14319), HATPase_c_2 (pfam13581), Y2_Tnp (pfam04986), beta_CA_cladeB (cd00884), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_IS630 (pfam01710)
DDE_3 (pfam13358)