myRT

myRT report for GCA_009709335.1_ASM970933v1

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Seq: CP039187.1 Piscirickettsia salmonis strain Psal-159 plasmid unnamed1, complete sequence (158207 bp)
Overview 1 RT 1: 59879-64275 bp 2 RT 2: 79352-82487 bp 3 RT 3: 135151-138892 bp 4 RT 4: 153111-157212 bp Neighborhood of RT #1 [59879, 64334] Rve Zn_Tnp_IS91 RVT-GII Rve Zn_Tnp_IS91 Y2_Tnp Neighborhood of RT #2 [79352, 82501] PHA02517 InsE RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #3 [135151, 138906] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #4 [153111, 157253] DDE_3 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 59879-60613 bp Ori: QGP27416.1 Feature: domain Description: Rve Location: 59921-60539 bp Feature: domain Description: Rve Location: 59921 -60539 bp Feature: gene Location: 61105-61605 bp Ori: QGP27417.1 Feature: domain Description: Zn_Tnp_IS91 Location: 61177-61450 bp Feature: domain Description: Zn_Tnp_IS91 Location: 61 1 77-61 450 bp Feature: gene Location: 61867-62457 bp Ori: QGP27418.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61870-62278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 870-62278 bp Feature: gene Location: 62587-63321 bp Ori: QGP27419.1 Feature: domain Description: Rve Location: 62629-63247 bp Feature: domain Description: Rve Location: 62629-63247 bp Feature: gene Location: 63543-64334 bp Ori: QGP27420.1 Feature: domain Description: Zn_Tnp_IS91 Location: 63582-63852 bp Feature: domain Description: Zn_Tnp_IS91 Location: 63582-63852 bp Feature: domain Description: Y2_Tnp Location: 63966-64275 bp Feature: domain Description: Y2_Tnp Location: 63966-64275 bp Feature: gene Location: 79352-79945 bp Ori: QGP27436.1 Feature: domain Description: PHA02517 Location: 79367-79919 bp Feature: domain Description: PHA0251 7 Location: 79367-7991 9 bp Feature: gene Location: 79993-80286 bp Ori: QGP27437.1 Feature: domain Description: InsE Location: 79999-80278 bp Feature: domain Description: InsE Location: 79999-80278 bp Feature: gene Location: 80352-81623 bp Ori: QGP27438.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80538-81219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80538-81 21 9 bp Feature: gene Location: 81679-82077 bp Ori: QGP27439.1 Feature: domain Description: Zn_Tnp_IS91 Location: 81691-81922 bp Feature: domain Description: Zn_Tnp_IS91 Location: 81 691 -81 922 bp Feature: gene Location: 82163-82501 bp Ori: QGP27440.1 Feature: domain Description: major_cap_HK97 Location: 82226-82487 bp Feature: domain Description: major_cap_HK97 Location: 82226-82487 bp Feature: gene Location: 135151-135615 bp Ori: QGP27518.1 Feature: domain Description: HTH_3 Location: 135160-135301 bp Feature: domain Description: HTH_3 Location: 1 351 60-1 35301 bp Feature: gene Location: 135969-136718 bp Ori: QGP27519.1 Feature: domain Description: Y2_Tnp Location: 135990-136488 bp Feature: domain Description: Y2_Tnp Location: 1 35990-1 36488 bp Feature: gene Location: 137026-137733 bp Ori: QGP27520.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137308-137698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 37308-1 37698 bp Feature: gene Location: 137672-138046 bp Ori: QGP27521.1 Feature: domain Description: InsE Location: 137765-138038 bp Feature: domain Description: InsE Location: 1 37765-1 38038 bp Feature: gene Location: 138094-138906 bp Ori: QGP27522.1 Feature: domain Description: PHA02517 Location: 138109-138892 bp Feature: domain Description: PHA0251 7 Location: 1 381 09-1 38892 bp Feature: gene Location: 153111-153560 bp Ori: QGP27544.1 Feature: domain Description: DDE_3 Location: 153123-153483 bp Feature: domain Description: DDE_3 Location: 1 531 23-1 53483 bp Feature: gene Location: 153564-153818 bp Ori: QGP27545.1 Feature: domain Description: InsE Location: 153570-153816 bp Feature: domain Description: InsE Location: 1 53570-1 5381 6 bp Feature: gene Location: 153778-154905 bp Ori: QGP27546.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154060-154738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 54060-1 54738 bp Feature: gene Location: 155602-156417 bp Ori: QGP27547.1 Feature: domain Description: Y2_Tnp Location: 155689-156187 bp Feature: domain Description: Y2_Tnp Location: 1 55689-1 561 87 bp Feature: gene Location: 156663-157253 bp Ori: QGP27548.1 Feature: domain Description: Phage_integrase Location: 156690-157212 bp Feature: domain Description: Phage_integrase Location: 1 56690-1 5721 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), Zn_Tnp_IS91 (pfam14319), RVT-GII, Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), DDE_3 (pfam13358), Phage_integrase (pfam00589)

Seq: CP039186.1 Piscirickettsia salmonis strain Psal-159 chromosome, complete genome (3052697 bp)
Overview 1 RT 1: 1034081-1038641 bp 2 RT 2: 1159005-1163301 bp 3 RT 3: 1280320-1284809 bp 4 RT 4: 1956534-1959499 bp 5 RT 5: 2175796-2178392 bp Neighborhood of RT #1 [1034081, 1038658] MoxR MDR_like_2 RVT-GII Zn_Tnp_IS91 HATPase_c_2 Neighborhood of RT #2 [1159005, 1163339] Y2_Tnp RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #3 [1280320, 1284809] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #4 [1956534, 1959510] InsE PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #5 [2175796, 2178469] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Feature: gene Location: 1034081-1035076 bp Ori: QGP25344.1 Feature: domain Description: MoxR Location: 1034132-1035074 bp Feature: domain Description: MoxR Location: 1034132 -1035074 bp Feature: gene Location: 1035284-1036246 bp Ori: QGP25345.1 Feature: domain Description: MDR_like_2 Location: 1035287-1036226 bp Feature: domain Description: MDR_like_2 Location: 10352 87-10362 2 6 bp Feature: gene Location: 1036954-1037685 bp Ori: QGP25346.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036960-1037278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036960-10372 78 bp Feature: gene Location: 1037741-1038241 bp Ori: QGP25347.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1037813-1038086 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1037813-1038086 bp Feature: gene Location: 1038338-1038658 bp Ori: QGP25348.1 Feature: domain Description: HATPase_c_2 Location: 1038362-1038641 bp Feature: domain Description: HATPase_c_2 Location: 1038362 -1038641 bp Feature: gene Location: 1159005-1159820 bp Ori: QGP25464.1 Feature: domain Description: Y2_Tnp Location: 1159092-1159590 bp Feature: domain Description: Y2 _Tnp Location: 1159092 -1159590 bp Feature: gene Location: 1160229-1161599 bp Ori: QGP25465.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160511-1161192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160511-1161192 bp Feature: gene Location: 1161655-1162155 bp Ori: QGP25466.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1161727-1162000 bp Feature: domain Description: Zn_Tnp_IS91 Location: 116172 7-1162 000 bp Feature: gene Location: 1162677-1163339 bp Ori: QGP25467.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1162725-1163301 bp Feature: domain Description: beta_CA_cladeB Location: 1162 72 5-1163301 bp Feature: gene Location: 1280320-1280856 bp Feature: gene Location: 1281018-1281833 bp Ori: QGP25580.1 Feature: domain Description: Y2_Tnp Location: 1281105-1281606 bp Feature: domain Description: Y2 _Tnp Location: 12 81105-12 81606 bp Feature: gene Location: 1282242-1283609 bp Ori: QGP25581.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1282524-1283205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 82 52 4-12 832 05 bp Feature: gene Location: 1283665-1284063 bp Ori: QGP25582.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1283677-1283908 bp Feature: domain Description: Zn_Tnp_IS91 Location: 12 83677-12 83908 bp Feature: gene Location: 1284252-1284809 bp Feature: gene Location: 1956534-1956827 bp Ori: QGP26243.1 Feature: domain Description: InsE Location: 1956540-1956819 bp Feature: domain Description: InsE Location: 1956540-1956819 bp Feature: gene Location: 1956875-1957687 bp Ori: QGP26244.1 Feature: domain Description: PHA02517 Location: 1956890-1957673 bp Feature: domain Description: PHA02 517 Location: 1956890-1957673 bp Feature: gene Location: 1957696-1958385 bp Ori: QGP26245.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1957978-1958371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1957978-1958371 bp Feature: gene Location: 1958794-1959123 bp Ori: QGP26246.1 Feature: domain Description: Y2_Tnp Location: 1958881-1959028 bp Feature: domain Description: Y2 _Tnp Location: 1958881-195902 8 bp Feature: gene Location: 1959145-1959510 bp Ori: QGP26247.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1959160-1959499 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1959160-1959499 bp Feature: gene Location: 2175796-2176323 bp Feature: gene Location: 2176409-2176807 bp Ori: QGP26456.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2176421-2176652 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 17642 1-2 176652 bp Feature: gene Location: 2176863-2177465 bp Ori: QGP26457.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2176869-2177061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 176869-2 177061 bp Feature: gene Location: 2177583-2177948 bp Ori: QGP26458.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2177598-2177937 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2 177598-2 177937 bp Feature: gene Location: 2178020-2178469 bp Ori: QGP26459.1 Feature: domain Description: DDE_3 Location: 2178032-2178392 bp Feature: domain Description: DDE_3 Location: 2 178032 -2 178392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), MDR_like_2 (cd05289), RVT-GII, Zn_Tnp_IS91 (pfam14319), HATPase_c_2 (pfam13581), Y2_Tnp (pfam04986), beta_CA_cladeB (cd00884), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_IS630 (pfam01710)
DDE_3 (pfam13358)