myRT

myRT report for GCA_009709355.1_ASM970935v1

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Seq: CP039191.1 Piscirickettsia salmonis strain Psal-160 plasmid unnamed1, complete sequence (120784 bp)
Overview 1 RT 1: 59879-63682 bp 2 RT 2: 97728-101469 bp 3 RT 3: 115688-119789 bp Neighborhood of RT #1 [59879, 63682] Rve Zn_Tnp_IS91 RVT-GII Rve Neighborhood of RT #2 [97728, 101483] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [115688, 119830] DDE_3 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 59879-60613 bp Ori: QGP30793.1 Feature: domain Description: Rve Location: 59921-60539 bp Feature: domain Description: Rve Location: 59921 -60539 bp Feature: gene Location: 61105-61605 bp Ori: QGP30794.1 Feature: domain Description: Zn_Tnp_IS91 Location: 61177-61450 bp Feature: domain Description: Zn_Tnp_IS91 Location: 61 1 77-61 450 bp Feature: gene Location: 61867-62457 bp Ori: QGP30795.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61870-62278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 870-62278 bp Feature: gene Location: 62587-63321 bp Ori: QGP30796.1 Feature: domain Description: Rve Location: 62629-63247 bp Feature: domain Description: Rve Location: 62629-63247 bp Feature: gene Location: 63284-63682 bp Feature: gene Location: 97728-98192 bp Ori: QGP30849.1 Feature: domain Description: HTH_3 Location: 97737-97878 bp Feature: domain Description: HTH_3 Location: 97737-97878 bp Feature: gene Location: 98546-99295 bp Ori: QGP30850.1 Feature: domain Description: Y2_Tnp Location: 98567-99065 bp Feature: domain Description: Y2_Tnp Location: 98567-99065 bp Feature: gene Location: 99603-100310 bp Ori: QGP30851.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99885-100275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99885-1 00275 bp Feature: gene Location: 100249-100623 bp Ori: QGP30852.1 Feature: domain Description: InsE Location: 100342-100615 bp Feature: domain Description: InsE Location: 1 00342-1 0061 5 bp Feature: gene Location: 100671-101483 bp Ori: QGP30853.1 Feature: domain Description: PHA02517 Location: 100686-101469 bp Feature: domain Description: PHA0251 7 Location: 1 00686-1 01 469 bp Feature: gene Location: 115688-116137 bp Ori: QGP30875.1 Feature: domain Description: DDE_3 Location: 115700-116060 bp Feature: domain Description: DDE_3 Location: 1 1 5700-1 1 6060 bp Feature: gene Location: 116141-116395 bp Ori: QGP30876.1 Feature: domain Description: InsE Location: 116147-116393 bp Feature: domain Description: InsE Location: 1 1 61 47-1 1 6393 bp Feature: gene Location: 116355-117482 bp Ori: QGP30877.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116637-117315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 6637-1 1 731 5 bp Feature: gene Location: 118179-118994 bp Ori: QGP30878.1 Feature: domain Description: Y2_Tnp Location: 118266-118764 bp Feature: domain Description: Y2_Tnp Location: 1 1 8266-1 1 8764 bp Feature: gene Location: 119240-119830 bp Ori: QGP30879.1 Feature: domain Description: Phage_integrase Location: 119267-119789 bp Feature: domain Description: Phage_integrase Location: 1 1 9267-1 1 9789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), Zn_Tnp_IS91 (pfam14319), RVT-GII, HTH_3 (pfam01381), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), DDE_3 (pfam13358), Phage_integrase (pfam00589)

Seq: CP039190.1 Piscirickettsia salmonis strain Psal-160 chromosome, complete genome (3062282 bp)
Overview 1 RT 1: 1033958-1038518 bp 2 RT 2: 1160105-1163177 bp 3 RT 3: 1289921-1294410 bp 4 RT 4: 1966119-1969084 bp 5 RT 5: 2185381-2187977 bp Neighborhood of RT #1 [1033958, 1038535] MoxR MDR_like_2 RVT-GII Zn_Tnp_IS91 HATPase_c_2 Neighborhood of RT #2 [1160105, 1163215] RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #3 [1289921, 1294410] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #4 [1966119, 1969095] InsE PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #5 [2185381, 2188054] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Feature: gene Location: 1033958-1034953 bp Ori: QGP28724.1 Feature: domain Description: MoxR Location: 1034009-1034951 bp Feature: domain Description: MoxR Location: 1034009-1034951 bp Feature: gene Location: 1035161-1036123 bp Ori: QGP28725.1 Feature: domain Description: MDR_like_2 Location: 1035164-1036103 bp Feature: domain Description: MDR_like_2 Location: 1035164-1036103 bp Feature: gene Location: 1036831-1037562 bp Ori: QGP28726.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036837-1037155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036837-1037155 bp Feature: gene Location: 1037618-1038118 bp Ori: QGP28727.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1037690-1037963 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1037690-1037963 bp Feature: gene Location: 1038215-1038535 bp Ori: QGP28728.1 Feature: domain Description: HATPase_c_2 Location: 1038239-1038518 bp Feature: domain Description: HATPase_c_2 Location: 10382 39-1038518 bp Feature: gene Location: 1160105-1161475 bp Ori: QGP28843.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160387-1161068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160387-1161068 bp Feature: gene Location: 1161531-1162031 bp Ori: QGP28844.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1161603-1161876 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1161603-1161876 bp Feature: gene Location: 1162553-1163215 bp Ori: QGP28845.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1162601-1163177 bp Feature: domain Description: beta_CA_cladeB Location: 1162 601-1163177 bp Feature: gene Location: 1289921-1290457 bp Feature: gene Location: 1290619-1291434 bp Ori: QGP28972.1 Feature: domain Description: Y2_Tnp Location: 1290706-1291207 bp Feature: domain Description: Y2 _Tnp Location: 12 90706-12 912 07 bp Feature: gene Location: 1291843-1293210 bp Ori: QGP28973.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1292125-1292806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 92 12 5-12 92 806 bp Feature: gene Location: 1293266-1293664 bp Ori: QGP28974.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1293278-1293509 bp Feature: domain Description: Zn_Tnp_IS91 Location: 12 932 78-12 93509 bp Feature: gene Location: 1293853-1294410 bp Feature: gene Location: 1966119-1966412 bp Ori: QGP29626.1 Feature: domain Description: InsE Location: 1966125-1966404 bp Feature: domain Description: InsE Location: 196612 5-1966404 bp Feature: gene Location: 1966460-1967272 bp Ori: QGP29627.1 Feature: domain Description: PHA02517 Location: 1966475-1967258 bp Feature: domain Description: PHA02 517 Location: 1966475-19672 58 bp Feature: gene Location: 1967281-1967970 bp Ori: QGP29628.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1967563-1967956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1967563-1967956 bp Feature: gene Location: 1968379-1968708 bp Ori: QGP29629.1 Feature: domain Description: Y2_Tnp Location: 1968466-1968613 bp Feature: domain Description: Y2 _Tnp Location: 1968466-1968613 bp Feature: gene Location: 1968730-1969095 bp Ori: QGP29630.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1968745-1969084 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1968745-1969084 bp Feature: gene Location: 2185381-2185908 bp Feature: gene Location: 2185994-2186392 bp Ori: QGP29839.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2186006-2186237 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 186006-2 1862 37 bp Feature: gene Location: 2186448-2187050 bp Ori: QGP29840.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2186454-2186646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 186454-2 186646 bp Feature: gene Location: 2187168-2187533 bp Ori: QGP29841.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2187183-2187522 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2 187183-2 18752 2 bp Feature: gene Location: 2187605-2188054 bp Ori: QGP29842.1 Feature: domain Description: DDE_3 Location: 2187617-2187977 bp Feature: domain Description: DDE_3 Location: 2 187617-2 187977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), MDR_like_2 (cd05289), RVT-GII, Zn_Tnp_IS91 (pfam14319), HATPase_c_2 (pfam13581), beta_CA_cladeB (cd00884), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_IS630 (pfam01710)
DDE_3 (pfam13358)