myRT

myRT report for GCA_009709375.1_ASM970937v1

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Seq: CP039196.1 Piscirickettsia salmonis strain Psal-161 plasmid unnamed1, complete sequence (158207 bp)
Overview 1 RT 1: 31281-35022 bp 2 RT 2: 49241-53342 bp 3 RT 3: 114216-118612 bp 4 RT 4: 133689-136824 bp Neighborhood of RT #1 [31281, 35036] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #2 [49241, 53383] DDE_3 InsE RVT-GII Y2_Tnp Phage_integrase Neighborhood of RT #3 [114216, 118671] Rve Zn_Tnp_IS91 RVT-GII Rve Zn_Tnp_IS91 Y2_Tnp Neighborhood of RT #4 [133689, 136838] PHA02517 InsE RVT-GII Zn_Tnp_IS91 major_cap_HK97 Feature: gene Location: 31281-31745 bp Ori: QGP34158.1 Feature: domain Description: HTH_3 Location: 31290-31431 bp Feature: domain Description: HTH_3 Location: 31 290-31 431 bp Feature: gene Location: 32099-32848 bp Ori: QGP34159.1 Feature: domain Description: Y2_Tnp Location: 32120-32618 bp Feature: domain Description: Y2_Tnp Location: 321 20-3261 8 bp Feature: gene Location: 33156-33863 bp Ori: QGP34160.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33438-33828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33438-33828 bp Feature: gene Location: 33802-34176 bp Ori: QGP34161.1 Feature: domain Description: InsE Location: 33895-34168 bp Feature: domain Description: InsE Location: 33895-341 68 bp Feature: gene Location: 34224-35036 bp Ori: QGP34162.1 Feature: domain Description: PHA02517 Location: 34239-35022 bp Feature: domain Description: PHA0251 7 Location: 34239-35022 bp Feature: gene Location: 49241-49690 bp Ori: QGP34184.1 Feature: domain Description: DDE_3 Location: 49253-49613 bp Feature: domain Description: DDE_3 Location: 49253-4961 3 bp Feature: gene Location: 49694-49948 bp Ori: QGP34185.1 Feature: domain Description: InsE Location: 49700-49946 bp Feature: domain Description: InsE Location: 49700-49946 bp Feature: gene Location: 49908-51035 bp Ori: QGP34186.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50190-50868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 90-50868 bp Feature: gene Location: 51732-52547 bp Ori: QGP34187.1 Feature: domain Description: Y2_Tnp Location: 51819-52317 bp Feature: domain Description: Y2_Tnp Location: 51 81 9-5231 7 bp Feature: gene Location: 52793-53383 bp Ori: QGP34188.1 Feature: domain Description: Phage_integrase Location: 52820-53342 bp Feature: domain Description: Phage_integrase Location: 52820-53342 bp Feature: gene Location: 114216-114950 bp Ori: QGP34264.1 Feature: domain Description: Rve Location: 114258-114876 bp Feature: domain Description: Rve Location: 1 1 4258-1 1 4876 bp Feature: gene Location: 115442-115942 bp Ori: QGP34265.1 Feature: domain Description: Zn_Tnp_IS91 Location: 115514-115787 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 1 551 4-1 1 5787 bp Feature: gene Location: 116204-116794 bp Ori: QGP34266.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116207-116615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 6207-1 1 661 5 bp Feature: gene Location: 116924-117658 bp Ori: QGP34267.1 Feature: domain Description: Rve Location: 116966-117584 bp Feature: domain Description: Rve Location: 1 1 6966-1 1 7584 bp Feature: gene Location: 117880-118671 bp Ori: QGP34268.1 Feature: domain Description: Zn_Tnp_IS91 Location: 117919-118189 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 1 791 9-1 1 81 89 bp Feature: domain Description: Y2_Tnp Location: 118303-118612 bp Feature: domain Description: Y2_Tnp Location: 1 1 8303-1 1 861 2 bp Feature: gene Location: 133689-134282 bp Ori: QGP34284.1 Feature: domain Description: PHA02517 Location: 133704-134256 bp Feature: domain Description: PHA0251 7 Location: 1 33704-1 34256 bp Feature: gene Location: 134330-134623 bp Ori: QGP34285.1 Feature: domain Description: InsE Location: 134336-134615 bp Feature: domain Description: InsE Location: 1 34336-1 3461 5 bp Feature: gene Location: 134689-135960 bp Ori: QGP34286.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134875-135556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 34875-1 35556 bp Feature: gene Location: 136016-136414 bp Ori: QGP34287.1 Feature: domain Description: Zn_Tnp_IS91 Location: 136028-136259 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 36028-1 36259 bp Feature: gene Location: 136500-136838 bp Ori: QGP34288.1 Feature: domain Description: major_cap_HK97 Location: 136563-136824 bp Feature: domain Description: major_cap_HK97 Location: 1 36563-1 36824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), Y2_Tnp (pfam04986), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), DDE_3 (pfam13358), Phage_integrase (pfam00589), Rve (COG3316), Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554)

Seq: CP039195.1 Piscirickettsia salmonis strain Psal-161 chromosome, complete genome (3052624 bp)
Overview 1 RT 1: 1034008-1038568 bp 2 RT 2: 1158932-1163228 bp 3 RT 3: 1280247-1284736 bp 4 RT 4: 1956461-1959426 bp 5 RT 5: 2175723-2178319 bp Neighborhood of RT #1 [1034008, 1038585] MoxR MDR_like_2 RVT-GII Zn_Tnp_IS91 HATPase_c_2 Neighborhood of RT #2 [1158932, 1163266] Y2_Tnp RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #3 [1280247, 1284736] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #4 [1956461, 1959437] InsE PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #5 [2175723, 2178396] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Feature: gene Location: 1034008-1035003 bp Ori: QGP32105.1 Feature: domain Description: MoxR Location: 1034059-1035001 bp Feature: domain Description: MoxR Location: 1034059-1035001 bp Feature: gene Location: 1035211-1036173 bp Ori: QGP32106.1 Feature: domain Description: MDR_like_2 Location: 1035214-1036153 bp Feature: domain Description: MDR_like_2 Location: 10352 14-1036153 bp Feature: gene Location: 1036881-1037612 bp Ori: QGP32107.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036887-1037205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036887-10372 05 bp Feature: gene Location: 1037668-1038168 bp Ori: QGP32108.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1037740-1038013 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1037740-1038013 bp Feature: gene Location: 1038265-1038585 bp Ori: QGP32109.1 Feature: domain Description: HATPase_c_2 Location: 1038289-1038568 bp Feature: domain Description: HATPase_c_2 Location: 10382 89-1038568 bp Feature: gene Location: 1158932-1159747 bp Ori: QGP32225.1 Feature: domain Description: Y2_Tnp Location: 1159019-1159517 bp Feature: domain Description: Y2 _Tnp Location: 1159019-1159517 bp Feature: gene Location: 1160156-1161526 bp Ori: QGP32226.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160438-1161119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160438-1161119 bp Feature: gene Location: 1161582-1162082 bp Ori: QGP32227.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1161654-1161927 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1161654-116192 7 bp Feature: gene Location: 1162604-1163266 bp Ori: QGP32228.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1162652-1163228 bp Feature: domain Description: beta_CA_cladeB Location: 1162 652 -11632 2 8 bp Feature: gene Location: 1280247-1280783 bp Feature: gene Location: 1280945-1281760 bp Ori: QGP32341.1 Feature: domain Description: Y2_Tnp Location: 1281032-1281533 bp Feature: domain Description: Y2 _Tnp Location: 12 81032 -12 81533 bp Feature: gene Location: 1282169-1283536 bp Ori: QGP32342.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1282451-1283132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 82 451-12 83132 bp Feature: gene Location: 1283592-1283990 bp Ori: QGP32343.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1283604-1283835 bp Feature: domain Description: Zn_Tnp_IS91 Location: 12 83604-12 83835 bp Feature: gene Location: 1284179-1284736 bp Feature: gene Location: 1956461-1956754 bp Ori: QGP33005.1 Feature: domain Description: InsE Location: 1956467-1956746 bp Feature: domain Description: InsE Location: 1956467-1956746 bp Feature: gene Location: 1956802-1957614 bp Ori: QGP33006.1 Feature: domain Description: PHA02517 Location: 1956817-1957600 bp Feature: domain Description: PHA02 517 Location: 1956817-1957600 bp Feature: gene Location: 1957623-1958312 bp Ori: QGP33007.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1957905-1958298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1957905-19582 98 bp Feature: gene Location: 1958721-1959050 bp Ori: QGP33008.1 Feature: domain Description: Y2_Tnp Location: 1958808-1958955 bp Feature: domain Description: Y2 _Tnp Location: 1958808-1958955 bp Feature: gene Location: 1959072-1959437 bp Ori: QGP33009.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1959087-1959426 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1959087-195942 6 bp Feature: gene Location: 2175723-2176250 bp Feature: gene Location: 2176336-2176734 bp Ori: QGP33218.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2176348-2176579 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 176348-2 176579 bp Feature: gene Location: 2176790-2177392 bp Ori: QGP33219.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2176796-2176988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 176796-2 176988 bp Feature: gene Location: 2177510-2177875 bp Ori: QGP33220.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2177525-2177864 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2 17752 5-2 177864 bp Feature: gene Location: 2177947-2178396 bp Ori: QGP33221.1 Feature: domain Description: DDE_3 Location: 2177959-2178319 bp Feature: domain Description: DDE_3 Location: 2 177959-2 178319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), MDR_like_2 (cd05289), RVT-GII, Zn_Tnp_IS91 (pfam14319), HATPase_c_2 (pfam13581), Y2_Tnp (pfam04986), beta_CA_cladeB (cd00884), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_IS630 (pfam01710)
DDE_3 (pfam13358)