myRT

myRT report for GCA_009709395.1_ASM970939v1

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Seq: CP039202.1 Piscirickettsia salmonis strain Psal-163 plasmid unnamed1, complete sequence (158203 bp)
Overview 1 RT 1: 59878-64274 bp 2 RT 2: 79351-82486 bp 3 RT 3: 135147-138888 bp 4 RT 4: 153107-157208 bp Neighborhood of RT #1 [59878, 64333] Rve Zn_Tnp_IS91 RVT-GII Rve Zn_Tnp_IS91 Y2_Tnp Neighborhood of RT #2 [79351, 82500] PHA02517 InsE RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #3 [135147, 138902] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #4 [153107, 157249] DDE_3 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 59878-60612 bp Ori: QGP37671.1 Feature: domain Description: Rve Location: 59920-60538 bp Feature: domain Description: Rve Location: 59920-60538 bp Feature: gene Location: 61104-61604 bp Ori: QGP37672.1 Feature: domain Description: Zn_Tnp_IS91 Location: 61176-61449 bp Feature: domain Description: Zn_Tnp_IS91 Location: 61 1 76-61 449 bp Feature: gene Location: 61866-62456 bp Ori: QGP37673.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61869-62277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 869-62277 bp Feature: gene Location: 62586-63320 bp Ori: QGP37674.1 Feature: domain Description: Rve Location: 62628-63246 bp Feature: domain Description: Rve Location: 62628-63246 bp Feature: gene Location: 63542-64333 bp Ori: QGP37675.1 Feature: domain Description: Zn_Tnp_IS91 Location: 63581-63851 bp Feature: domain Description: Zn_Tnp_IS91 Location: 63581 -63851 bp Feature: domain Description: Y2_Tnp Location: 63965-64274 bp Feature: domain Description: Y2_Tnp Location: 63965-64274 bp Feature: gene Location: 79351-79944 bp Ori: QGP37691.1 Feature: domain Description: PHA02517 Location: 79366-79918 bp Feature: domain Description: PHA0251 7 Location: 79366-7991 8 bp Feature: gene Location: 79992-80285 bp Ori: QGP37692.1 Feature: domain Description: InsE Location: 79998-80277 bp Feature: domain Description: InsE Location: 79998-80277 bp Feature: gene Location: 80351-81622 bp Ori: QGP37693.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80537-81218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80537-81 21 8 bp Feature: gene Location: 81678-82076 bp Ori: QGP37694.1 Feature: domain Description: Zn_Tnp_IS91 Location: 81690-81921 bp Feature: domain Description: Zn_Tnp_IS91 Location: 81 690-81 921 bp Feature: gene Location: 82162-82500 bp Ori: QGP37695.1 Feature: domain Description: major_cap_HK97 Location: 82225-82486 bp Feature: domain Description: major_cap_HK97 Location: 82225-82486 bp Feature: gene Location: 135147-135611 bp Ori: QGP37773.1 Feature: domain Description: HTH_3 Location: 135156-135297 bp Feature: domain Description: HTH_3 Location: 1 351 56-1 35297 bp Feature: gene Location: 135965-136714 bp Ori: QGP37774.1 Feature: domain Description: Y2_Tnp Location: 135986-136484 bp Feature: domain Description: Y2_Tnp Location: 1 35986-1 36484 bp Feature: gene Location: 137022-137729 bp Ori: QGP37775.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137304-137694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 37304-1 37694 bp Feature: gene Location: 137668-138042 bp Ori: QGP37776.1 Feature: domain Description: InsE Location: 137761-138034 bp Feature: domain Description: InsE Location: 1 37761 -1 38034 bp Feature: gene Location: 138090-138902 bp Ori: QGP37777.1 Feature: domain Description: PHA02517 Location: 138105-138888 bp Feature: domain Description: PHA0251 7 Location: 1 381 05-1 38888 bp Feature: gene Location: 153107-153556 bp Ori: QGP37799.1 Feature: domain Description: DDE_3 Location: 153119-153479 bp Feature: domain Description: DDE_3 Location: 1 531 1 9-1 53479 bp Feature: gene Location: 153560-153814 bp Ori: QGP37800.1 Feature: domain Description: InsE Location: 153566-153812 bp Feature: domain Description: InsE Location: 1 53566-1 5381 2 bp Feature: gene Location: 153774-154901 bp Ori: QGP37801.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154056-154734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 54056-1 54734 bp Feature: gene Location: 155598-156413 bp Ori: QGP37802.1 Feature: domain Description: Y2_Tnp Location: 155685-156183 bp Feature: domain Description: Y2_Tnp Location: 1 55685-1 561 83 bp Feature: gene Location: 156659-157249 bp Ori: QGP37803.1 Feature: domain Description: Phage_integrase Location: 156686-157208 bp Feature: domain Description: Phage_integrase Location: 1 56686-1 57208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), Zn_Tnp_IS91 (pfam14319), RVT-GII, Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), DDE_3 (pfam13358), Phage_integrase (pfam00589)

Seq: CP039201.1 Piscirickettsia salmonis strain Psal-163 chromosome, complete genome (3062326 bp)
Overview 1 RT 1: 1033981-1038541 bp 2 RT 2: 1158904-1163200 bp 3 RT 3: 1289955-1294444 bp 4 RT 4: 1966168-1969133 bp 5 RT 5: 2185430-2188026 bp Neighborhood of RT #1 [1033981, 1038558] MoxR MDR_like_2 RVT-GII Zn_Tnp_IS91 HATPase_c_2 Neighborhood of RT #2 [1158904, 1163238] Y2_Tnp RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #3 [1289955, 1294444] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #4 [1966168, 1969144] InsE PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #5 [2185430, 2188103] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Feature: gene Location: 1033981-1034976 bp Ori: QGP35582.1 Feature: domain Description: MoxR Location: 1034032-1034974 bp Feature: domain Description: MoxR Location: 1034032 -1034974 bp Feature: gene Location: 1035184-1036146 bp Ori: QGP35583.1 Feature: domain Description: MDR_like_2 Location: 1035187-1036126 bp Feature: domain Description: MDR_like_2 Location: 1035187-103612 6 bp Feature: gene Location: 1036854-1037585 bp Ori: QGP35584.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036860-1037178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036860-1037178 bp Feature: gene Location: 1037641-1038141 bp Ori: QGP35585.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1037713-1037986 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1037713-1037986 bp Feature: gene Location: 1038238-1038558 bp Ori: QGP35586.1 Feature: domain Description: HATPase_c_2 Location: 1038262-1038541 bp Feature: domain Description: HATPase_c_2 Location: 10382 62 -1038541 bp Feature: gene Location: 1158904-1159719 bp Ori: QGP35702.1 Feature: domain Description: Y2_Tnp Location: 1158991-1159489 bp Feature: domain Description: Y2 _Tnp Location: 1158991-1159489 bp Feature: gene Location: 1160128-1161498 bp Ori: QGP35703.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160410-1161091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1160410-1161091 bp Feature: gene Location: 1161554-1162054 bp Ori: QGP35704.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1161626-1161899 bp Feature: domain Description: Zn_Tnp_IS91 Location: 116162 6-1161899 bp Feature: gene Location: 1162576-1163238 bp Ori: QGP35705.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1162624-1163200 bp Feature: domain Description: beta_CA_cladeB Location: 1162 62 4-11632 00 bp Feature: gene Location: 1289955-1290491 bp Feature: gene Location: 1290653-1291468 bp Ori: QGP35831.1 Feature: domain Description: Y2_Tnp Location: 1290740-1291241 bp Feature: domain Description: Y2 _Tnp Location: 12 90740-12 912 41 bp Feature: gene Location: 1291877-1293244 bp Ori: QGP35832.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1292159-1292840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 92 159-12 92 840 bp Feature: gene Location: 1293300-1293698 bp Ori: QGP35833.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1293312-1293543 bp Feature: domain Description: Zn_Tnp_IS91 Location: 12 93312 -12 93543 bp Feature: gene Location: 1293887-1294444 bp Feature: gene Location: 1966168-1966461 bp Ori: QGP36493.1 Feature: domain Description: InsE Location: 1966174-1966453 bp Feature: domain Description: InsE Location: 1966174-1966453 bp Feature: gene Location: 1966509-1967321 bp Ori: QGP36494.1 Feature: domain Description: PHA02517 Location: 1966524-1967307 bp Feature: domain Description: PHA02 517 Location: 196652 4-1967307 bp Feature: gene Location: 1967330-1968019 bp Ori: QGP36495.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1967612-1968005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1967612 -1968005 bp Feature: gene Location: 1968428-1968757 bp Ori: QGP36496.1 Feature: domain Description: Y2_Tnp Location: 1968515-1968662 bp Feature: domain Description: Y2 _Tnp Location: 1968515-1968662 bp Feature: gene Location: 1968779-1969144 bp Ori: QGP36497.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1968794-1969133 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1968794-1969133 bp Feature: gene Location: 2185430-2185957 bp Feature: gene Location: 2186043-2186441 bp Ori: QGP36706.1 Feature: domain Description: Zn_Tnp_IS91 Location: 2186055-2186286 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 186055-2 1862 86 bp Feature: gene Location: 2186497-2187099 bp Ori: QGP36707.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2186503-2186695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 186503-2 186695 bp Feature: gene Location: 2187217-2187582 bp Ori: QGP36708.1 Feature: domain Description: HTH_Tnp_IS630 Location: 2187232-2187571 bp Feature: domain Description: HTH_Tnp_IS630 Location: 2 1872 32 -2 187571 bp Feature: gene Location: 2187654-2188103 bp Ori: QGP36709.1 Feature: domain Description: DDE_3 Location: 2187666-2188026 bp Feature: domain Description: DDE_3 Location: 2 187666-2 18802 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), MDR_like_2 (cd05289), RVT-GII, Zn_Tnp_IS91 (pfam14319), HATPase_c_2 (pfam13581), Y2_Tnp (pfam04986), beta_CA_cladeB (cd00884), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_IS630 (pfam01710)
DDE_3 (pfam13358)