myRT

myRT report for GCA_009709415.1_ASM970941v1

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Seq: CP039205.1 Piscirickettsia salmonis strain Psal-182 plasmid unnamed1, complete sequence (144508 bp)
Overview 1 RT 1: 24431-28027 bp 2 RT 2: 75502-78413 bp 3 RT 3: 122764-126960 bp 4 RT 4: 138028-143502 bp Neighborhood of RT #1 [24431, 28041] Rve Zn_Tnp_IS91 RVT-GII InsE PHA02517 Neighborhood of RT #2 [75502, 78427] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #3 [122764, 126974] HTH_3 Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #4 [138028, 143543] Zn_Tnp_IS91 PHA02517 RVT-GII InsE Y2_Tnp Phage_integrase Feature: gene Location: 24431-25159 bp Ori: QGP41081.1 Feature: domain Description: Rve Location: 24473-25091 bp Feature: domain Description: Rve Location: 24473-25091 bp Feature: gene Location: 25473-25973 bp Ori: QGP41082.1 Feature: domain Description: Zn_Tnp_IS91 Location: 25545-25818 bp Feature: domain Description: Zn_Tnp_IS91 Location: 25545-2581 8 bp Feature: gene Location: 26235-26825 bp Ori: QGP41083.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26238-26646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26238-26646 bp Feature: gene Location: 26888-27181 bp Ori: QGP41084.1 Feature: domain Description: InsE Location: 26894-27173 bp Feature: domain Description: InsE Location: 26894-271 73 bp Feature: gene Location: 27229-28041 bp Ori: QGP41085.1 Feature: domain Description: PHA02517 Location: 27244-28027 bp Feature: domain Description: PHA0251 7 Location: 27244-28027 bp Feature: gene Location: 75502-75951 bp Ori: QGP41147.1 Feature: domain Description: DDE_3 Location: 75514-75874 bp Feature: domain Description: DDE_3 Location: 7551 4-75874 bp Feature: gene Location: 76023-76388 bp Ori: QGP41148.1 Feature: domain Description: HTH_Tnp_IS630 Location: 76038-76377 bp Feature: domain Description: HTH_Tnp_IS630 Location: 76038-76377 bp Feature: gene Location: 76488-77549 bp Ori: QGP41149.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76491-77145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76491 -771 45 bp Feature: gene Location: 77605-78003 bp Ori: QGP41150.1 Feature: domain Description: Zn_Tnp_IS91 Location: 77617-77848 bp Feature: domain Description: Zn_Tnp_IS91 Location: 7761 7-77848 bp Feature: gene Location: 78089-78427 bp Ori: QGP41151.1 Feature: domain Description: major_cap_HK97 Location: 78152-78413 bp Feature: domain Description: major_cap_HK97 Location: 781 52-7841 3 bp Feature: gene Location: 122764-123228 bp Ori: QGP41221.1 Feature: domain Description: HTH_3 Location: 122773-122914 bp Feature: domain Description: HTH_3 Location: 1 22773-1 2291 4 bp Feature: gene Location: 124161-124685 bp Ori: QGP41222.1 Feature: domain Description: Y2_Tnp Location: 124248-124644 bp Feature: domain Description: Y2_Tnp Location: 1 24248-1 24644 bp Feature: gene Location: 125094-125801 bp Ori: QGP41223.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125376-125766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25376-1 25766 bp Feature: gene Location: 125740-126114 bp Ori: QGP41224.1 Feature: domain Description: InsE Location: 125833-126106 bp Feature: domain Description: InsE Location: 1 25833-1 261 06 bp Feature: gene Location: 126162-126974 bp Ori: QGP41225.1 Feature: domain Description: PHA02517 Location: 126177-126960 bp Feature: domain Description: PHA0251 7 Location: 1 261 77-1 26960 bp Feature: gene Location: 138028-138528 bp Ori: QGP41244.1 Feature: domain Description: Zn_Tnp_IS91 Location: 138100-138373 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 381 00-1 38373 bp Feature: gene Location: 138956-139768 bp Ori: QGP41245.1 Feature: domain Description: PHA02517 Location: 138971-139754 bp Feature: domain Description: PHA0251 7 Location: 1 38971 -1 39754 bp Feature: gene Location: 139816-141195 bp Ori: QGP41246.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140098-140776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 40098-1 40776 bp Feature: domain Description: InsE Location: 140914-141187 bp Feature: domain Description: InsE Location: 1 4091 4-1 41 1 87 bp Feature: gene Location: 141892-142707 bp Ori: QGP41247.1 Feature: domain Description: Y2_Tnp Location: 141979-142477 bp Feature: domain Description: Y2_Tnp Location: 1 41 979-1 42477 bp Feature: gene Location: 142953-143543 bp Ori: QGP41248.1 Feature: domain Description: Phage_integrase Location: 142980-143502 bp Feature: domain Description: Phage_integrase Location: 1 42980-1 43502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), Zn_Tnp_IS91 (pfam14319), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), major_cap_HK97 (TIGR01554), HTH_3 (pfam01381), Y2_Tnp (pfam04986)
Phage_integrase (pfam00589)

Seq: CP039204.1 Piscirickettsia salmonis strain Psal-182 chromosome, complete genome (3126070 bp)
Overview 1 RT 1: 1126364-1129747 bp 2 RT 2: 1290100-1294454 bp 3 RT 3: 1812882-1817372 bp 4 RT 4: 1913319-1921810 bp 5 RT 5: 2054854-2060549 bp 6 RT 6: 3096934-3105524 bp Neighborhood of RT #1 [1126364, 1129863] HTH_Tnp_IS630 Y2_Tnp RVT-GII PHA02517 PHA02517 Neighborhood of RT #2 [1290100, 1294454] HTH_Tnp_IS630 Y2_Tnp RVT-GII InsE PHA02517 RVT-GII HTH_Tnp_1 Neighborhood of RT #3 [1812882, 1817372] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #4 [1913319, 1922040] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII DDE_3 PHA02517 HTH_23 RVT-GII Y2_Tnp Neighborhood of RT #5 [2054854, 2060551] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #6 [3096934, 3105754] 2OG-Fe_Oxy_2 Rve RVT-GII DDE_3 HTH_Tnp_IS630 RVT-GII Y2_Tnp Feature: gene Location: 1126364-1126729 bp Ori: QGP39026.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1126379-1126718 bp Feature: domain Description: HTH_Tnp_IS630 Location: 112 6379-112 6718 bp Feature: gene Location: 1126751-1127080 bp Ori: QGP39027.1 Feature: domain Description: Y2_Tnp Location: 1126838-1126985 bp Feature: domain Description: Y2 _Tnp Location: 112 6838-112 6985 bp Feature: gene Location: 1127489-1127992 bp Ori: QGP39028.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1127771-1127960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 7771-112 7960 bp Feature: gene Location: 1128763-1129266 bp Ori: QGP39029.1 Feature: domain Description: PHA02517 Location: 1128793-1129252 bp Feature: domain Description: PHA02 517 Location: 112 8793-112 92 52 bp Feature: gene Location: 1129411-1129863 bp Ori: QGP39030.1 Feature: domain Description: PHA02517 Location: 1129426-1129747 bp Feature: domain Description: PHA02 517 Location: 112 942 6-112 9747 bp Feature: gene Location: 1290100-1290465 bp Ori: QGP39190.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1290115-1290454 bp Feature: domain Description: HTH_Tnp_IS630 Location: 12 90115-12 90454 bp Feature: gene Location: 1290487-1290984 bp Ori: QGP39191.1 Feature: domain Description: Y2_Tnp Location: 1290574-1290946 bp Feature: domain Description: Y2 _Tnp Location: 12 90574-12 90946 bp Feature: gene Location: 1291474-1291998 bp Ori: QGP39192.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1291675-1291903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 91675-12 91903 bp Feature: gene Location: 1291958-1292251 bp Ori: QGP39193.1 Feature: domain Description: InsE Location: 1291964-1292243 bp Feature: domain Description: InsE Location: 12 91964-12 92 2 43 bp Feature: gene Location: 1292299-1293111 bp Ori: QGP39194.1 Feature: domain Description: PHA02517 Location: 1292314-1293097 bp Feature: domain Description: PHA02 517 Location: 12 92 314-12 93097 bp Feature: gene Location: 1293189-1293806 bp Ori: QGP39195.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1293192-1293603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 93192 -12 93603 bp Feature: gene Location: 1293843-1294268 bp Ori: QGP39196.1 Feature: domain Description: HTH_Tnp_1 Location: 1293948-1294179 bp Feature: domain Description: HTH_Tnp_1 Location: 12 93948-12 94179 bp Feature: gene Location: 1294338-1294454 bp Feature: gene Location: 1812882-1813439 bp Feature: gene Location: 1813628-1814026 bp Ori: QGP39712.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1813640-1813871 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1813640-1813871 bp Feature: gene Location: 1814128-1815450 bp Ori: QGP39713.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1814410-1815091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1814410-1815091 bp Feature: gene Location: 1815859-1816674 bp Ori: QGP39714.1 Feature: domain Description: Y2_Tnp Location: 1815946-1816447 bp Feature: domain Description: Y2 _Tnp Location: 1815946-1816447 bp Feature: gene Location: 1816836-1817372 bp Feature: gene Location: 1913319-1913981 bp Ori: QGP39808.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1913367-1913943 bp Feature: domain Description: beta_CA_cladeB Location: 1913367-1913943 bp Feature: gene Location: 1914503-1915003 bp Ori: QGP39809.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1914575-1914848 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1914575-1914848 bp Feature: gene Location: 1915105-1916310 bp Ori: QGP39810.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1915267-1915948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19152 67-1915948 bp Feature: gene Location: 1916416-1916718 bp Feature: gene Location: 1917103-1917552 bp Ori: QGP39812.1 Feature: domain Description: DDE_3 Location: 1917115-1917475 bp Feature: domain Description: DDE_3 Location: 1917115-1917475 bp Feature: gene Location: 1918072-1918884 bp Ori: QGP39814.1 Feature: domain Description: PHA02517 Location: 1918087-1918870 bp Feature: domain Description: PHA02 517 Location: 1918087-1918870 bp Feature: gene Location: 1918893-1919237 bp Ori: QGP39815.1 Feature: domain Description: HTH_23 Location: 1918911-1919022 bp Feature: domain Description: HTH_2 3 Location: 1918911-191902 2 bp Feature: gene Location: 1919522-1920844 bp Ori: QGP39816.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1919804-1920485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1919804-192 0485 bp Feature: gene Location: 1921225-1922040 bp Ori: QGP39817.1 Feature: domain Description: Y2_Tnp Location: 1921312-1921810 bp Feature: domain Description: Y2 _Tnp Location: 192 1312 -192 1810 bp Feature: gene Location: 2054854-2055915 bp Ori: QGP39954.1 Feature: domain Description: DDE_5 Location: 2054875-2055466 bp Feature: domain Description: DDE_5 Location: 2 054875-2 055466 bp Feature: gene Location: 2055963-2056283 bp Ori: QGP39955.1 Feature: domain Description: HATPase_c_2 Location: 2055987-2056266 bp Feature: domain Description: HATPase_c_2 Location: 2 055987-2 0562 66 bp Feature: gene Location: 2057253-2057954 bp Ori: QGP39956.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2057259-2057577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0572 59-2 057577 bp Feature: gene Location: 2058374-2059336 bp Ori: QGP39957.1 Feature: domain Description: MDR_like_2 Location: 2058377-2059316 bp Feature: domain Description: MDR_like_2 Location: 2 058377-2 059316 bp Feature: gene Location: 2059556-2060551 bp Ori: QGP39958.1 Feature: domain Description: MoxR Location: 2059607-2060549 bp Feature: domain Description: MoxR Location: 2 059607-2 060549 bp Feature: gene Location: 3096934-3097590 bp Ori: QGP41026.1 Feature: domain Description: 2OG-Fe_Oxy_2 Location: 3097009-3097567 bp Feature: domain Description: 2 OG-Fe_Oxy_2 Location: 3097009-3097567 bp Feature: gene Location: 3098559-3099287 bp Ori: QGP41027.1 Feature: domain Description: Rve Location: 3098601-3099219 bp Feature: domain Description: Rve Location: 3098601-30992 19 bp Feature: gene Location: 3099756-3101075 bp Ori: QGP41028.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3100038-3100716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3100038-3100716 bp Feature: gene Location: 3102036-3102485 bp Ori: QGP41029.1 Feature: domain Description: DDE_3 Location: 3102048-3102408 bp Feature: domain Description: DDE_3 Location: 3102 048-3102 408 bp Feature: gene Location: 3102557-3102922 bp Ori: QGP41030.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3102572-3102911 bp Feature: domain Description: HTH_Tnp_IS630 Location: 3102 572 -3102 911 bp Feature: gene Location: 3102944-3103954 bp Ori: QGP41031.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3103226-3103907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31032 2 6-3103907 bp Feature: gene Location: 3104651-3104902 bp Feature: gene Location: 3105047-3105754 bp Ori: QGP41033.1 Feature: domain Description: Y2_Tnp Location: 3105083-3105524 bp Feature: domain Description: Y2 _Tnp Location: 3105083-310552 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_IS630 (pfam01710), Y2_Tnp (pfam04986), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), HTH_Tnp_1 (pfam01527), Zn_Tnp_IS91 (pfam14319), beta_CA_cladeB (cd00884), DDE_3 (pfam13358), HTH_23 (pfam13384)
DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), 2OG-Fe_Oxy_2 (pfam10014), Rve (COG3316)