myRT

myRT report for GCA_009709455.1_ASM970945v1

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Seq: CP039210.1 Piscirickettsia salmonis strain Psal-103 plasmid unnamed1, complete sequence (171449 bp)
Overview 1 RT 1: 26109-31469 bp 2 RT 2: 72815-75743 bp 3 RT 3: 80544-84894 bp 4 RT 4: 118418-122965 bp Neighborhood of RT #1 [26109, 31783] PHA02517 InsE RVT-GII group_II_RT_mat RVT-GII RVT-GII Y2_Tnp HTH_3 Neighborhood of RT #2 [72815, 75757] Zn_Tnp_IS91 group_II_RT_mat RVT-GII InsE PHA02517 Neighborhood of RT #3 [80544, 84908] Y2_Tnp Zn_Tnp_IS91 RVT-GII InsE PHA02517 Neighborhood of RT #4 [118418, 123006] PHA02517 InsE RVT-GII Y2_Tnp Phage_integrase Feature: gene Location: 26109-26921 bp Ori: QGP44630.1 Feature: domain Description: PHA02517 Location: 26124-26907 bp Feature: domain Description: PHA0251 7 Location: 261 24-26907 bp Feature: gene Location: 26969-27262 bp Ori: QGP44631.1 Feature: domain Description: InsE Location: 26975-27254 bp Feature: domain Description: InsE Location: 26975-27254 bp Feature: gene Location: 27283-27990 bp Ori: QGP44632.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27565-27955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27565-27955 bp Feature: gene Location: 28374-28871 bp Ori: QGP44633.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 28380-28731 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 28380-28731 bp Feature: gene Location: 28868-29332 bp Ori: QGP44634.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28886-29330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28886-29330 bp Feature: gene Location: 29301-29741 bp Ori: QGP44635.1 Gene: ltrA_11 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29583-29733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29583-29733 bp Feature: gene Location: 30150-30965 bp Ori: QGP44636.1 Feature: domain Description: Y2_Tnp Location: 30237-30735 bp Feature: domain Description: Y2_Tnp Location: 30237-30735 bp Feature: gene Location: 31319-31783 bp Ori: QGP44637.1 Feature: domain Description: HTH_3 Location: 31328-31469 bp Feature: domain Description: HTH_3 Location: 31 328-31 469 bp Feature: gene Location: 72815-73213 bp Ori: QGP44702.1 Feature: domain Description: Zn_Tnp_IS91 Location: 72827-73058 bp Feature: domain Description: Zn_Tnp_IS91 Location: 72827-73058 bp Feature: gene Location: 73269-73766 bp Ori: QGP44703.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 73275-73626 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 73275-73626 bp Feature: gene Location: 73763-74539 bp Ori: QGP44704.1 Gene: ltrA_12 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73949-74537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73949-74537 bp Feature: gene Location: 74544-74897 bp Ori: QGP44705.1 Feature: domain Description: InsE Location: 74616-74889 bp Feature: domain Description: InsE Location: 7461 6-74889 bp Feature: gene Location: 74945-75757 bp Ori: QGP44706.1 Feature: domain Description: PHA02517 Location: 74960-75743 bp Feature: domain Description: PHA0251 7 Location: 74960-75743 bp Feature: gene Location: 80544-81569 bp Ori: QGP44712.1 Feature: domain Description: Y2_Tnp Location: 80799-81339 bp Feature: domain Description: Y2_Tnp Location: 80799-81 339 bp Feature: gene Location: 82305-82805 bp Ori: QGP44713.1 Feature: domain Description: Zn_Tnp_IS91 Location: 82377-82650 bp Feature: domain Description: Zn_Tnp_IS91 Location: 82377-82650 bp Feature: gene Location: 83067-83657 bp Ori: QGP44714.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83070-83478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83070-83478 bp Feature: gene Location: 83720-84013 bp Ori: QGP44715.1 Feature: domain Description: InsE Location: 83726-84005 bp Feature: domain Description: InsE Location: 83726-84005 bp Feature: gene Location: 84096-84908 bp Ori: QGP44716.1 Feature: domain Description: PHA02517 Location: 84111-84894 bp Feature: domain Description: PHA0251 7 Location: 841 1 1 -84894 bp Feature: gene Location: 118418-119230 bp Ori: QGP44760.1 Feature: domain Description: PHA02517 Location: 118433-119216 bp Feature: domain Description: PHA0251 7 Location: 1 1 8433-1 1 921 6 bp Feature: gene Location: 119278-119571 bp Ori: QGP44761.1 Feature: domain Description: InsE Location: 119284-119563 bp Feature: domain Description: InsE Location: 1 1 9284-1 1 9563 bp Feature: gene Location: 119531-120658 bp Ori: QGP44762.1 Gene: ltrA_13 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119813-120491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 981 3-1 20491 bp Feature: gene Location: 121355-122170 bp Ori: QGP44763.1 Feature: domain Description: Y2_Tnp Location: 121442-121940 bp Feature: domain Description: Y2_Tnp Location: 1 21 442-1 21 940 bp Feature: gene Location: 122416-123006 bp Ori: QGP44764.1 Feature: domain Description: Phage_integrase Location: 122443-122965 bp Feature: domain Description: Phage_integrase Location: 1 22443-1 22965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), Y2_Tnp (pfam04986), HTH_3 (pfam01381), Zn_Tnp_IS91 (pfam14319), Phage_integrase (pfam00589)

Seq: CP039209.1 Piscirickettsia salmonis strain Psal-103 chromosome, complete genome (3142986 bp)
Overview 1 RT 1: 910743-913418 bp 2 RT 2: 1133003-1139137 bp 3 RT 3: 1293669-1303245 bp 4 RT 4: 1825584-1830073 bp 5 RT 5: 1925987-1934503 bp 6 RT 6: 2065118-2071378 bp 7 RT 7: 3118327-3122440 bp Neighborhood of RT #1 [910743, 913418] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1133003, 1139145] HTH_Tnp_IS630 Y2_Tnp RVT-GII HTH_Tnp_IS630 DDE_3 RVT-GII PHA02517 InsE Neighborhood of RT #3 [1293669, 1303271] AcrB Y2_Tnp RVT-GII Rve VI_chp_5 Neighborhood of RT #4 [1825584, 1830073] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #5 [1925987, 1934733] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII DDE_3 PHA02517 HTH_23 RVT-GII Y2_Tnp Neighborhood of RT #6 [2065118, 2071380] DDE_5 HATPase_c_2 RVT-GII MDR_like_2 MoxR Neighborhood of RT #7 [3118327, 3122670] COG2958 Zn_Tnp_IS91 RVT-GII Y2_Tnp Feature: gene Location: 910743-911192 bp Ori: QGP42320.1 Feature: domain Description: DDE_3 Location: 910755-911115 bp Feature: domain Description: DDE_3 Location: 910755-911115 bp Feature: gene Location: 911264-911629 bp Ori: QGP42321.1 Feature: domain Description: HTH_Tnp_IS630 Location: 911279-911618 bp Feature: domain Description: HTH_Tnp_IS630 Location: 9112 79-911618 bp Feature: gene Location: 911747-912322 bp Ori: QGP42322.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911753-911945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 911753-911945 bp Feature: gene Location: 912407-912805 bp Ori: QGP42323.1 Feature: domain Description: Zn_Tnp_IS91 Location: 912419-912650 bp Feature: domain Description: Zn_Tnp_IS91 Location: 912 419-912 650 bp Feature: gene Location: 912891-913418 bp Feature: gene Location: 1133003-1133368 bp Ori: QGP42541.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1133018-1133357 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1133018-1133357 bp Feature: gene Location: 1133390-1133719 bp Ori: QGP42542.1 Feature: domain Description: Y2_Tnp Location: 1133477-1133624 bp Feature: domain Description: Y2 _Tnp Location: 1133477-113362 4 bp Feature: gene Location: 1134128-1135450 bp Ori: QGP42543.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1134410-1135091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1134410-1135091 bp Feature: gene Location: 1135981-1136346 bp Ori: QGP42544.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1135996-1136335 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1135996-1136335 bp Feature: gene Location: 1136418-1136867 bp Ori: QGP42545.1 Feature: domain Description: DDE_3 Location: 1136430-1136790 bp Feature: domain Description: DDE_3 Location: 1136430-1136790 bp Feature: gene Location: 1137375-1137983 bp Ori: QGP42546.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1137576-1137969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1137576-1137969 bp Feature: gene Location: 1137992-1138804 bp Ori: QGP42547.1 Feature: domain Description: PHA02517 Location: 1138007-1138790 bp Feature: domain Description: PHA02 517 Location: 1138007-1138790 bp Feature: gene Location: 1138852-1139145 bp Ori: QGP42548.1 Feature: domain Description: InsE Location: 1138858-1139137 bp Feature: domain Description: InsE Location: 1138858-1139137 bp Feature: gene Location: 1293669-1296749 bp Ori: QGP42702.1 Gene: bepE_3 Feature: domain Description: AcrB Location: 1293678-1296690 bp Feature: domain Description: AcrB Location: 12 93678-12 96690 bp Feature: gene Location: 1297048-1297863 bp Ori: QGP42703.1 Feature: domain Description: Y2_Tnp Location: 1297135-1297636 bp Feature: domain Description: Y2 _Tnp Location: 12 97135-12 97636 bp Feature: gene Location: 1298272-1299594 bp Ori: QGP42704.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1298554-1299235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 98554-12 992 35 bp Feature: gene Location: 1300503-1301147 bp Ori: QGP42705.1 Feature: domain Description: Rve Location: 1300545-1301124 bp Feature: domain Description: Rve Location: 1300545-130112 4 bp Feature: gene Location: 1302765-1303271 bp Ori: QGP42706.1 Feature: domain Description: VI_chp_5 Location: 1302777-1303245 bp Feature: domain Description: VI_chp_5 Location: 1302 777-13032 45 bp Feature: gene Location: 1825584-1826141 bp Feature: gene Location: 1826330-1826728 bp Ori: QGP43230.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1826342-1826573 bp Feature: domain Description: Zn_Tnp_IS91 Location: 182 6342 -182 6573 bp Feature: gene Location: 1826784-1828151 bp Ori: QGP43231.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1827066-1827747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 7066-182 7747 bp Feature: gene Location: 1828560-1829375 bp Ori: QGP43232.1 Feature: domain Description: Y2_Tnp Location: 1828647-1829148 bp Feature: domain Description: Y2 _Tnp Location: 182 8647-182 9148 bp Feature: gene Location: 1829537-1830073 bp Feature: gene Location: 1925987-1926649 bp Ori: QGP43324.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1926035-1926611 bp Feature: domain Description: beta_CA_cladeB Location: 192 6035-192 6611 bp Feature: gene Location: 1927171-1927671 bp Ori: QGP43325.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1927243-1927516 bp Feature: domain Description: Zn_Tnp_IS91 Location: 192 72 43-192 7516 bp Feature: gene Location: 1927773-1928975 bp Ori: QGP43326.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1927935-1928613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 7935-192 8613 bp Feature: gene Location: 1929081-1929383 bp Feature: gene Location: 1929768-1930217 bp Ori: QGP43328.1 Feature: domain Description: DDE_3 Location: 1929780-1930140 bp Feature: domain Description: DDE_3 Location: 192 9780-1930140 bp Feature: gene Location: 1930737-1931549 bp Ori: QGP43330.1 Feature: domain Description: PHA02517 Location: 1930752-1931535 bp Feature: domain Description: PHA02 517 Location: 1930752 -1931535 bp Feature: gene Location: 1931558-1931902 bp Ori: QGP43331.1 Feature: domain Description: HTH_23 Location: 1931576-1931687 bp Feature: domain Description: HTH_2 3 Location: 1931576-1931687 bp Feature: gene Location: 1932187-1933509 bp Ori: QGP43332.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1932469-1933150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1932 469-1933150 bp Feature: gene Location: 1933918-1934733 bp Ori: QGP43333.1 Feature: domain Description: Y2_Tnp Location: 1934005-1934503 bp Feature: domain Description: Y2 _Tnp Location: 1934005-1934503 bp Feature: gene Location: 2065118-2066179 bp Ori: QGP43467.1 Feature: domain Description: DDE_5 Location: 2065139-2065730 bp Feature: domain Description: DDE_5 Location: 2 065139-2 065730 bp Feature: gene Location: 2066227-2066547 bp Ori: QGP43468.1 Feature: domain Description: HATPase_c_2 Location: 2066251-2066530 bp Feature: domain Description: HATPase_c_2 Location: 2 0662 51-2 066530 bp Feature: gene Location: 2067488-2068219 bp Ori: QGP43469.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2067494-2067812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 067494-2 067812 bp Feature: gene Location: 2069215-2070177 bp Ori: QGP43470.1 Feature: domain Description: MDR_like_2 Location: 2069218-2070157 bp Feature: domain Description: MDR_like_2 Location: 2 0692 18-2 070157 bp Feature: gene Location: 2070385-2071380 bp Ori: QGP43471.1 Feature: domain Description: MoxR Location: 2070436-2071378 bp Feature: domain Description: MoxR Location: 2 070436-2 071378 bp Feature: gene Location: 3118327-3118542 bp Ori: QGP44567.1 Feature: domain Description: COG2958 Location: 3118330-3118537 bp Feature: domain Description: COG2 958 Location: 3118330-3118537 bp Feature: gene Location: 3118941-3119336 bp Ori: QGP44568.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3119028-3119220 bp Feature: domain Description: Zn_Tnp_IS91 Location: 311902 8-31192 2 0 bp Feature: gene Location: 3119548-3120870 bp Ori: QGP44569.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3119830-3120511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3119830-312 0511 bp Feature: gene Location: 3121567-3121818 bp Feature: gene Location: 3121963-3122670 bp Ori: QGP44571.1 Feature: domain Description: Y2_Tnp Location: 3121999-3122440 bp Feature: domain Description: Y2 _Tnp Location: 312 1999-312 2 440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), AcrB (COG0841), Rve (COG3316), VI_chp_5 (TIGR03358)
beta_CA_cladeB (cd00884), HTH_23 (pfam13384), DDE_5 (pfam13546), HATPase_c_2 (pfam13581), MDR_like_2 (cd05289), MoxR (COG0714), COG2958 (Uncharacterized protein )