myRT

myRT report for GCA_009709475.1_ASM970947v1

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Seq: CP039214.1 Piscirickettsia salmonis strain Psal-104a chromosome, complete genome (3160732 bp)
Overview 1 RT 1: 919423-922097 bp 2 RT 2: 1010657-1016193 bp 3 RT 3: 1148752-1153051 bp 4 RT 4: 1320760-1325250 bp 5 RT 5: 1422544-1427018 bp 6 RT 6: 1785590-1789933 bp 7 RT 7: 1943349-1947506 bp 8 RT 8: 3135117-3139235 bp Neighborhood of RT #1 [919423, 922097] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #2 [1010657, 1016642] MoxR MDR_like_2 RVT-GII HATPase_c_2 DDE_5 Neighborhood of RT #3 [1148752, 1153083] Y2_Tnp RVT-GII HTH_Tnp_1 HTH_21 Tra5 Neighborhood of RT #4 [1320760, 1325250] Zn_Tnp_IS91 RVT-GII Y2_Tnp Neighborhood of RT #5 [1422544, 1427077] beta_CA_cladeB Zn_Tnp_IS91 RVT-GII HTH_21 Tra5 HTH_Tnp_1 Neighborhood of RT #6 [1785590, 1789944] HTH_Tnp_1 RVT-GII PHA02517 InsE RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #7 [1943349, 1947517] Zn_Tnp_IS91 PHA02517 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #8 [3135117, 3139246] COG2958 Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 Feature: gene Location: 919423-919872 bp Ori: QGP45911.1 Feature: domain Description: DDE_3 Location: 919435-919795 bp Feature: domain Description: DDE_3 Location: 91 9435-91 9795 bp Feature: gene Location: 919944-920309 bp Ori: QGP45912.1 Feature: domain Description: HTH_Tnp_IS630 Location: 919959-920298 bp Feature: domain Description: HTH_Tnp_IS630 Location: 91 9959-920298 bp Feature: gene Location: 920427-920984 bp Ori: QGP45913.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 920433-920625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 920433-920625 bp Feature: gene Location: 921086-921484 bp Ori: QGP45914.1 Feature: domain Description: Zn_Tnp_IS91 Location: 921098-921329 bp Feature: domain Description: Zn_Tnp_IS91 Location: 921 098-921 329 bp Feature: gene Location: 921570-922097 bp Feature: gene Location: 1010657-1011652 bp Ori: QGP46004.1 Feature: domain Description: MoxR Location: 1010708-1011650 bp Feature: domain Description: MoxR Location: 1 01 0708-1 01 1 650 bp Feature: gene Location: 1011872-1012834 bp Ori: QGP46005.1 Feature: domain Description: MDR_like_2 Location: 1011875-1012814 bp Feature: domain Description: MDR_like_2 Location: 1 01 1 875-1 01 281 4 bp Feature: gene Location: 1013542-1014243 bp Ori: QGP46006.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1013548-1013866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 3548-1 01 3866 bp Feature: gene Location: 1015213-1015533 bp Ori: QGP46007.1 Feature: domain Description: HATPase_c_2 Location: 1015237-1015516 bp Feature: domain Description: HATPase_c_2 Location: 1 01 5237-1 01 551 6 bp Feature: gene Location: 1015581-1016642 bp Ori: QGP46008.1 Feature: domain Description: DDE_5 Location: 1015602-1016193 bp Feature: domain Description: DDE_5 Location: 1 01 5602-1 01 61 93 bp Feature: gene Location: 1148752-1149567 bp Ori: QGP46137.1 Feature: domain Description: Y2_Tnp Location: 1148839-1149337 bp Feature: domain Description: Y2_Tnp Location: 1 1 48839-1 1 49337 bp Feature: gene Location: 1149948-1150934 bp Ori: QGP46138.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1150230-1150908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 50230-1 1 50908 bp Feature: gene Location: 1151963-1152235 bp Ori: QGP46139.1 Feature: domain Description: HTH_Tnp_1 Location: 1151972-1152176 bp Feature: domain Description: HTH_Tnp_1 Location: 1 1 51 972-1 1 521 76 bp Feature: gene Location: 1152247-1153083 bp Ori: QGP46140.1 Feature: domain Description: HTH_21 Location: 1152370-1152523 bp Feature: domain Description: HTH_21 Location: 1 1 52370-1 1 52523 bp Feature: domain Description: Tra5 Location: 1152571-1153051 bp Feature: domain Description: Tra5 Location: 1 1 52571 -1 1 53051 bp Feature: gene Location: 1320760-1321317 bp Feature: gene Location: 1321506-1321904 bp Ori: QGP46303.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1321518-1321749 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 321 51 8-1 321 749 bp Feature: gene Location: 1322006-1323328 bp Ori: QGP46304.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1322288-1322969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 322288-1 322969 bp Feature: gene Location: 1323737-1324552 bp Ori: QGP46305.1 Feature: domain Description: Y2_Tnp Location: 1323824-1324325 bp Feature: domain Description: Y2_Tnp Location: 1 323824-1 324325 bp Feature: gene Location: 1324714-1325250 bp Feature: gene Location: 1422544-1423206 bp Ori: QGP46401.1 Gene: cynT Feature: domain Description: beta_CA_cladeB Location: 1422592-1423168 bp Feature: domain Description: beta_CA_cladeB Location: 1 422592-1 4231 68 bp Feature: gene Location: 1423728-1424228 bp Ori: QGP46402.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1423800-1424073 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 423800-1 424073 bp Feature: gene Location: 1424330-1425532 bp Ori: QGP46403.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424492-1425173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 424492-1 4251 73 bp Feature: gene Location: 1425957-1426793 bp Ori: QGP46404.1 Feature: domain Description: HTH_21 Location: 1426080-1426233 bp Feature: domain Description: HTH_21 Location: 1 426080-1 426233 bp Feature: domain Description: Tra5 Location: 1426281-1426761 bp Feature: domain Description: Tra5 Location: 1 426281 -1 426761 bp Feature: gene Location: 1426805-1427077 bp Ori: QGP46405.1 Feature: domain Description: HTH_Tnp_1 Location: 1426814-1427018 bp Feature: domain Description: HTH_Tnp_1 Location: 1 42681 4-1 42701 8 bp Feature: gene Location: 1785590-1785706 bp Feature: gene Location: 1785776-1786201 bp Ori: QGP46776.1 Feature: domain Description: HTH_Tnp_1 Location: 1785881-1786112 bp Feature: domain Description: HTH_Tnp_1 Location: 1 785881 -1 7861 1 2 bp Feature: gene Location: 1786238-1786855 bp Ori: QGP46777.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1786241-1786652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 786241 -1 786652 bp Feature: gene Location: 1786933-1787745 bp Ori: QGP46778.1 Feature: domain Description: PHA02517 Location: 1786948-1787731 bp Feature: domain Description: PHA0251 7 Location: 1 786948-1 787731 bp Feature: gene Location: 1787793-1788086 bp Ori: QGP46779.1 Feature: domain Description: InsE Location: 1787799-1788078 bp Feature: domain Description: InsE Location: 1 787799-1 788078 bp Feature: gene Location: 1788046-1788570 bp Ori: QGP46780.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1788247-1788475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 788247-1 788475 bp Feature: gene Location: 1789060-1789557 bp Ori: QGP46781.1 Feature: domain Description: Y2_Tnp Location: 1789147-1789519 bp Feature: domain Description: Y2_Tnp Location: 1 7891 47-1 78951 9 bp Feature: gene Location: 1789579-1789944 bp Ori: QGP46782.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1789594-1789933 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 789594-1 789933 bp Feature: gene Location: 1943349-1943759 bp Ori: QGP46940.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1943370-1943604 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 943370-1 943604 bp Feature: gene Location: 1944594-1945406 bp Ori: QGP46941.1 Feature: domain Description: PHA02517 Location: 1944609-1945392 bp Feature: domain Description: PHA0251 7 Location: 1 944609-1 945392 bp Feature: gene Location: 1945832-1946392 bp Ori: QGP46942.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1946114-1946363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9461 1 4-1 946363 bp Feature: gene Location: 1946801-1947130 bp Ori: QGP46943.1 Feature: domain Description: Y2_Tnp Location: 1946888-1947035 bp Feature: domain Description: Y2_Tnp Location: 1 946888-1 947035 bp Feature: gene Location: 1947152-1947517 bp Ori: QGP46944.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1947167-1947506 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1 9471 67-1 947506 bp Feature: gene Location: 3135117-3135332 bp Ori: QGP48169.1 Feature: domain Description: COG2958 Location: 3135120-3135327 bp Feature: domain Description: COG2958 Location: 31 351 20-31 35327 bp Feature: gene Location: 3135731-3136126 bp Ori: QGP48170.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3135818-3136010 bp Feature: domain Description: Zn_Tnp_IS91 Location: 31 3581 8-31 3601 0 bp Feature: gene Location: 3136338-3137657 bp Ori: QGP48171.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3136620-3137298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 36620-31 37298 bp Feature: gene Location: 3138354-3138605 bp Feature: gene Location: 3138881-3139246 bp Ori: QGP48173.1 Feature: domain Description: HTH_Tnp_IS630 Location: 3138896-3139235 bp Feature: domain Description: HTH_Tnp_IS630 Location: 31 38896-31 39235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), MoxR (COG0714), MDR_like_2 (cd05289), HATPase_c_2 (pfam13581), DDE_5 (pfam13546), Y2_Tnp (pfam04986), HTH_Tnp_1 (pfam01527)
HTH_21 (pfam13276), Tra5 (COG2801), beta_CA_cladeB (cd00884), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), COG2958 (Uncharacterized protein )

Seq: CP039215.1 Piscirickettsia salmonis strain Psal-104a plasmid unnamed1, complete sequence (153780 bp)
Overview 1 RT 1: 68481-71393 bp 2 RT 2: 115238-118617 bp 3 RT 3: 129397-134871 bp Neighborhood of RT #1 [68481, 71407] DDE_3 HTH_Tnp_IS630 RVT-GII Zn_Tnp_IS91 major_cap_HK97 Neighborhood of RT #2 [115238, 118631] Y2_Tnp Y2_Tnp RVT-GII InsE PHA02517 Neighborhood of RT #3 [129397, 134912] Zn_Tnp_IS91 PHA02517 RVT-GII InsE Y2_Tnp Phage_integrase Feature: gene Location: 68481-68930 bp Ori: QGP48288.1 Feature: domain Description: DDE_3 Location: 68493-68853 bp Feature: domain Description: DDE_3 Location: 68493-68853 bp Feature: gene Location: 69002-69367 bp Ori: QGP48289.1 Feature: domain Description: HTH_Tnp_IS630 Location: 69017-69356 bp Feature: domain Description: HTH_Tnp_IS630 Location: 69017-69356 bp Feature: gene Location: 69467-70483 bp Ori: QGP48290.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69470-70124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69470-7012 4 bp Feature: gene Location: 70585-70983 bp Ori: QGP48291.1 Feature: domain Description: Zn_Tnp_IS91 Location: 70597-70828 bp Feature: domain Description: Zn_Tnp_IS91 Location: 70597-7082 8 bp Feature: gene Location: 71039-71407 bp Ori: QGP48292.1 Feature: domain Description: major_cap_HK97 Location: 71132-71393 bp Feature: domain Description: major_cap_HK97 Location: 71132 -71393 bp Feature: gene Location: 115238-115570 bp Ori: QGP48364.1 Feature: domain Description: Y2_Tnp Location: 115256-115340 bp Feature: domain Description: Y2 _Tnp Location: 1152 56-115340 bp Feature: gene Location: 115817-116341 bp Ori: QGP48365.1 Feature: domain Description: Y2_Tnp Location: 115904-116300 bp Feature: domain Description: Y2 _Tnp Location: 115904-116300 bp Feature: gene Location: 116750-117457 bp Ori: QGP48366.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117032-117422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117032 -11742 2 bp Feature: gene Location: 117478-117771 bp Ori: QGP48367.1 Feature: domain Description: InsE Location: 117484-117763 bp Feature: domain Description: InsE Location: 117484-117763 bp Feature: gene Location: 117819-118631 bp Ori: QGP48368.1 Feature: domain Description: PHA02517 Location: 117834-118617 bp Feature: domain Description: PHA02 517 Location: 117834-118617 bp Feature: gene Location: 129397-129897 bp Ori: QGP48386.1 Feature: domain Description: Zn_Tnp_IS91 Location: 129469-129742 bp Feature: domain Description: Zn_Tnp_IS91 Location: 12 9469-12 9742 bp Feature: gene Location: 130325-131137 bp Ori: QGP48387.1 Feature: domain Description: PHA02517 Location: 130340-131123 bp Feature: domain Description: PHA02 517 Location: 130340-13112 3 bp Feature: gene Location: 131185-132564 bp Ori: QGP48388.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131467-132145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131467-132 145 bp Feature: domain Description: InsE Location: 132283-132556 bp Feature: domain Description: InsE Location: 132 2 83-132 556 bp Feature: gene Location: 133261-134076 bp Ori: QGP48389.1 Feature: domain Description: Y2_Tnp Location: 133348-133846 bp Feature: domain Description: Y2 _Tnp Location: 133348-133846 bp Feature: gene Location: 134322-134912 bp Ori: QGP48390.1 Feature: domain Description: Phage_integrase Location: 134349-134871 bp Feature: domain Description: Phage_integrase Location: 134349-134871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), HTH_Tnp_IS630 (pfam01710), RVT-GII, Zn_Tnp_IS91 (pfam14319), major_cap_HK97 (TIGR01554), Y2_Tnp (pfam04986), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Phage_integrase (pfam00589)