myRT

myRT report for GCA_009720125.1_ASM972012v1

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Seq: CP046246.1 Tetragenococcus halophilus strain YJ1 chromosome, complete genome (2476596 bp)
Overview 1 RT 1: 466687-470432 bp 2 RT 2: 625367-631131 bp 3 RT 3: 866224-872135 bp 4 RT 4: 900114-906146 bp 5 RT 5: 1370510-1380922 bp 6 RT 6: 1489947-1494990 bp 7 RT 7: 1541485-1547177 bp 8 RT 8: 1571281-1580220 bp 9 RT 9: 1672751-1677778 bp 10 RT 10: 2181780-2186299 bp 11 RT 11: 2198959-2204464 bp 12 RT 12: 2401111-2408330 bp Neighborhood of RT #1 [466687, 470938] HTH_Tnp_1 RVT-GII GIIM PS_pyruv_trans Neighborhood of RT #2 [625367, 631298] ATP-synt_Fo_c_ATPE AtpB RVT-GII GIIM smpB RNase_R Neighborhood of RT #3 [866224, 872143] PgpA MFS_LmrB_MDR_like RVT-GII GIIM FepD FepD Neighborhood of RT #4 [900114, 906853] NanE GIIM RVT-GII PRK13805 zinc_ribbon_2 Neighborhood of RT #5 [1370510, 1381098] PRK06520 GIIM RVT-GII PRK00566 rpoB Neighborhood of RT #6 [1489947, 1495049] Peptidase_C1_2 GT8_A4GalT_like RVT-GII GIIM RsmG Neighborhood of RT #7 [1541485, 1547713] ElaA PRK12451 RVT-GII GIIM GlcU HTH_24 Mga Neighborhood of RT #8 [1571281, 1580255] PG_binding_4 PG_binding_4 YkuD_like ldh RVT-GII GIIM Pth Mfd Neighborhood of RT #9 [1672751, 1677828] HTH_ARSR DUF1648 SdpI RVT-GII GIIM selD PRK11784 Neighborhood of RT #10 [2181780, 2186418] YceD RpmF RVT-GII GIIM DUF4352 DUF4372 DDE_Tnp_1 Neighborhood of RT #11 [2198959, 2204464] Arm-DNA-bind_4 Phage_int_SAM_5 INT_ICEBs1_C_like Zeta_toxin RVT-GII GIIM Neighborhood of RT #12 [2401111, 2408344] cello_pts_IIC BglB RVT-GII GIIM PRK09243 nadE Feature: gene Location: 466687-466915 bp Ori: QGP75715.1 Feature: domain Description: HTH_Tnp_1 Location: 466696-466900 bp Feature: domain Description: HTH_Tnp_1 Location: 466696-466900 bp Feature: gene Location: 465777-466687 bp Feature: gene Location: 467122-468420 bp Ori: QGP75716.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467323-467941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467323-467941 bp Feature: domain Description: GIIM Note: maturase Location: 467998-468205 bp Feature: domain Description: GIIM Note: maturase Location: 467998-468205 bp Feature: gene Location: 468986-469213 bp Feature: gene Location: 469532-470938 bp Ori: QGP75718.1 Feature: domain Description: PS_pyruv_trans Location: 469625-470432 bp Feature: domain Description: PS_pyruv_trans Location: 469625-470432 bp Feature: gene Location: 625367-625576 bp Ori: QGP75845.1 Gene: atpE Feature: domain Description: ATP-synt_Fo_c_ATPE Location: 625376-625568 bp Feature: domain Description: ATP-synt_Fo_c_ATPE Location: 625376-625568 bp Feature: gene Location: 625607-626323 bp Ori: QGP75846.1 Gene: atpB Feature: domain Description: AtpB Location: 625655-626318 bp Feature: domain Description: AtpB Location: 625655-62631 8 bp Feature: gene Location: 626673-627971 bp Ori: QGP75847.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 626874-627492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 626874-627492 bp Feature: domain Description: GIIM Note: maturase Location: 627549-627756 bp Feature: domain Description: GIIM Note: maturase Location: 627549-627756 bp Feature: gene Location: 628498-628956 bp Ori: QGP75848.1 Gene: smpB Feature: domain Description: smpB Location: 628519-628948 bp Feature: domain Description: smpB Location: 62851 9-628948 bp Feature: gene Location: 628980-631298 bp Ori: QGP75849.1 Gene: rnr Feature: domain Description: RNase_R Location: 628995-631131 bp Feature: domain Description: RNase_R Location: 628995-631 1 31 bp Feature: gene Location: 866224-866733 bp Ori: QGP76060.1 Feature: domain Description: PgpA Location: 866251-866698 bp Feature: domain Description: PgpA Location: 866251 -866698 bp Feature: gene Location: 866885-868264 bp Ori: QGP76061.1 Feature: domain Description: MFS_LmrB_MDR_like Location: 866936-868223 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 866936-868223 bp Feature: gene Location: 868331-869629 bp Ori: QGP76062.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868532-869150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868532-8691 50 bp Feature: domain Description: GIIM Note: maturase Location: 869207-869414 bp Feature: domain Description: GIIM Note: maturase Location: 869207-86941 4 bp Feature: gene Location: 870168-871163 bp Ori: QGP76063.1 Feature: domain Description: FepD Location: 870186-871146 bp Feature: domain Description: FepD Location: 8701 86-871 1 46 bp Feature: gene Location: 871160-872143 bp Ori: QGP77481.1 Feature: domain Description: FepD Location: 871181-872135 bp Feature: domain Description: FepD Location: 871 1 81 -8721 35 bp Feature: gene Location: 900114-900806 bp Ori: QGP77483.1 Feature: domain Description: NanE Location: 900120-900801 bp Feature: domain Description: NanE Location: 9001 20-900801 bp Feature: gene Location: 901138-901503 bp Ori: QGP76088.1 Feature: domain Description: GIIM Note: maturase Location: 901144-901348 bp Feature: domain Description: GIIM Note: maturase Location: 901 1 44-901 348 bp Feature: gene Location: 901548-902408 bp Ori: QGP76089.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901767-902382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901 767-902382 bp Feature: gene Location: 903170-905860 bp Ori: QGP76090.1 Gene: adhE Feature: domain Description: PRK13805 Location: 903221-905858 bp Feature: domain Description: PRK1 3805 Location: 903221 -905858 bp Feature: gene Location: 906077-906853 bp Ori: QGP76091.1 Feature: domain Description: zinc_ribbon_2 Location: 906086-906146 bp Feature: domain Description: zinc_ribbon_2 Location: 906086-9061 46 bp Feature: gene Location: 1370510-1371655 bp Ori: QGP76485.1 Feature: domain Description: PRK06520 Location: 1370531-1371650 bp Feature: domain Description: PRK06520 Location: 1 370531 -1 371 650 bp Feature: gene Location: 1371867-1372232 bp Ori: QGP76486.1 Feature: domain Description: GIIM Note: maturase Location: 1371873-1372077 bp Feature: domain Description: GIIM Note: maturase Location: 1 371 873-1 372077 bp Feature: gene Location: 1372277-1373137 bp Ori: QGP76487.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1372496-1373111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 372496-1 3731 1 1 bp Feature: gene Location: 1373698-1377351 bp Ori: QGP76488.1 Gene: rpoC Feature: domain Description: PRK00566 Location: 1373713-1377295 bp Feature: domain Description: PRK00566 Location: 1 37371 3-1 377295 bp Feature: gene Location: 1377481-1381098 bp Ori: QGP76489.1 Gene: rpoB Feature: domain Description: rpoB Location: 1377502-1380922 bp Feature: domain Description: rpoB Location: 1 377502-1 380922 bp Feature: gene Location: 1489947-1491263 bp Ori: QGP76585.1 Feature: domain Description: Peptidase_C1_2 Location: 1489962-1491258 bp Feature: domain Description: Peptidase_C1 _2 Location: 1 489962-1 491 258 bp Feature: gene Location: 1491430-1492254 bp Ori: QGP76586.1 Feature: domain Description: GT8_A4GalT_like Location: 1491439-1492189 bp Feature: domain Description: GT8_A4GalT_like Location: 1 491 439-1 4921 89 bp Feature: gene Location: 1492806-1493666 bp Ori: QGP76587.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493025-1493640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 493025-1 493640 bp Feature: gene Location: 1493711-1494076 bp Ori: QGP76588.1 Feature: domain Description: GIIM Note: maturase Location: 1493717-1493921 bp Feature: domain Description: GIIM Note: maturase Location: 1 49371 7-1 493921 bp Feature: gene Location: 1494333-1495049 bp Ori: QGP76589.1 Gene: rsmG Feature: domain Description: RsmG Location: 1494345-1494990 bp Feature: domain Description: RsmG Location: 1 494345-1 494990 bp Feature: gene Location: 1541485-1541583 bp Feature: domain Description: ElaA Location: 1541488-1541566 bp Feature: domain Description: ElaA Location: 1 541 488-1 541 566 bp Feature: gene Location: 1541907-1543598 bp Ori: QGP76632.1 Feature: domain Description: PRK12451 Location: 1541910-1543596 bp Feature: domain Description: PRK1 2451 Location: 1 541 91 0-1 543596 bp Feature: gene Location: 1544228-1545517 bp Ori: QGP77511.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1544444-1545059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 544444-1 545059 bp Feature: domain Description: GIIM Note: maturase Location: 1545119-1545326 bp Feature: domain Description: GIIM Note: maturase Location: 1 5451 1 9-1 545326 bp Feature: gene Location: 1545680-1546546 bp Ori: QGP76633.1 Feature: domain Description: GlcU Location: 1545686-1546544 bp Feature: domain Description: GlcU Location: 1 545686-1 546544 bp Feature: gene Location: 1546601-1547713 bp Ori: QGP76634.1 Feature: domain Description: HTH_24 Location: 1546733-1546841 bp Feature: domain Description: HTH_24 Location: 1 546733-1 546841 bp Feature: domain Description: Mga Location: 1546940-1547177 bp Feature: domain Description: Mga Location: 1 546940-1 5471 77 bp Feature: gene Location: 1571281-1572684 bp Ori: QGP76654.1 Feature: domain Description: PG_binding_4 Location: 1571542-1571887 bp Feature: domain Description: PG_binding_4 Location: 1 571 542-1 571 887 bp Feature: domain Description: PG_binding_4 Location: 1571923-1572262 bp Feature: domain Description: PG_binding_4 Location: 1 571 923-1 572262 bp Feature: domain Description: YkuD_like Location: 1572331-1572679 bp Feature: domain Description: YkuD_like Location: 1 572331 -1 572679 bp Feature: gene Location: 1572954-1573928 bp Ori: QGP76655.1 Feature: domain Description: ldh Location: 1572972-1573908 bp Feature: domain Description: ldh Location: 1 572972-1 573908 bp Feature: gene Location: 1574724-1576013 bp Ori: QGP77513.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1574940-1575555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 574940-1 575555 bp Feature: domain Description: GIIM Note: maturase Location: 1575615-1575822 bp Feature: domain Description: GIIM Note: maturase Location: 1 57561 5-1 575822 bp Feature: gene Location: 1576126-1576686 bp Ori: QGP76656.1 Feature: domain Description: Pth Location: 1576129-1576684 bp Feature: domain Description: Pth Location: 1 5761 29-1 576684 bp Feature: gene Location: 1576722-1580255 bp Ori: QGP76657.1 Gene: mfd Feature: domain Description: Mfd Location: 1576785-1580220 bp Feature: domain Description: Mfd Location: 1 576785-1 580220 bp Feature: gene Location: 1672751-1673029 bp Ori: QGP76725.1 Feature: domain Description: HTH_ARSR Location: 1672772-1672985 bp Feature: domain Description: HTH_ARSR Location: 1 672772-1 672985 bp Feature: gene Location: 1673019-1673651 bp Ori: QGP76726.1 Feature: domain Description: DUF1648 Location: 1673061-1673205 bp Feature: domain Description: DUF1 648 Location: 1 673061 -1 673205 bp Feature: domain Description: SdpI Location: 1673427-1673625 bp Feature: domain Description: SdpI Location: 1 673427-1 673625 bp Feature: gene Location: 1674257-1675546 bp Ori: QGP77519.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1674473-1675088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 674473-1 675088 bp Feature: domain Description: GIIM Note: maturase Location: 1675148-1675355 bp Feature: domain Description: GIIM Note: maturase Location: 1 6751 48-1 675355 bp Feature: gene Location: 1675715-1676767 bp Ori: QGP76727.1 Gene: selD Feature: domain Description: selD Location: 1675739-1676666 bp Feature: domain Description: selD Location: 1 675739-1 676666 bp Feature: gene Location: 1676791-1677828 bp Ori: QGP76728.1 Gene: mnmH Feature: domain Description: PRK11784 Location: 1676836-1677778 bp Feature: domain Description: PRK1 1 784 Location: 1 676836-1 677778 bp Feature: gene Location: 2181780-2182349 bp Ori: QGP77176.1 Feature: domain Description: YceD Location: 2181783-2182317 bp Feature: domain Description: YceD Location: 21 81 783-21 8231 7 bp Feature: gene Location: 2182403-2182585 bp Ori: QGP77177.1 Gene: rpmF Feature: domain Description: RpmF Location: 2182406-2182571 bp Feature: domain Description: RpmF Location: 21 82406-21 82571 bp Feature: gene Location: 2183153-2184442 bp Ori: QGP77544.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2183369-2183984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 83369-21 83984 bp Feature: domain Description: GIIM Note: maturase Location: 2184044-2184251 bp Feature: domain Description: GIIM Note: maturase Location: 21 84044-21 84251 bp Feature: gene Location: 2184750-2185160 bp Ori: QGP77178.1 Feature: domain Description: DUF4352 Location: 2184858-2185155 bp Feature: domain Description: DUF4352 Location: 21 84858-21 851 55 bp Feature: gene Location: 2185312-2186418 bp Ori: QGP77179.1 Feature: domain Description: DUF4372 Location: 2185405-2185513 bp Feature: domain Description: DUF4372 Location: 21 85405-21 8551 3 bp Feature: domain Description: DDE_Tnp_1 Location: 2185678-2186299 bp Feature: domain Description: DDE_Tnp_1 Location: 21 85678-21 86299 bp Feature: gene Location: 2198959-2200083 bp Ori: QGP77186.1 Feature: domain Description: Arm-DNA-bind_4 Location: 2198992-2199103 bp Feature: domain Description: Arm-DNA-bind_4 Location: 21 98992-21 991 03 bp Feature: domain Description: Phage_int_SAM_5 Location: 2199160-2199424 bp Feature: domain Description: Phage_int_SAM_5 Location: 21 991 60-21 99424 bp Feature: domain Description: INT_ICEBs1_C_like Location: 2199481-2200030 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 21 99481 -2200030 bp Feature: gene Location: 2200450-2201130 bp Ori: QGP77187.1 Feature: domain Description: Zeta_toxin Location: 2200513-2201011 bp Feature: domain Description: Zeta_toxin Location: 220051 3-2201 01 1 bp Feature: gene Location: 2201934-2202794 bp Ori: QGP77188.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2202153-2202768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22021 53-2202768 bp Feature: gene Location: 2202839-2203204 bp Ori: QGP77189.1 Feature: domain Description: GIIM Note: maturase Location: 2202845-2203049 bp Feature: domain Description: GIIM Note: maturase Location: 2202845-2203049 bp Feature: gene Location: 2203529-2204464 bp Feature: gene Location: 2401111-2402379 bp Ori: QGP77367.1 Gene: celB Feature: domain Description: cello_pts_IIC Location: 2401147-2402365 bp Feature: domain Description: cello_pts_IIC Location: 2401 1 47-2402365 bp Feature: gene Location: 2402539-2403936 bp Ori: QGP77368.1 Feature: domain Description: BglB Location: 2402551-2403925 bp Feature: domain Description: BglB Location: 2402551 -2403925 bp Feature: gene Location: 2404497-2405786 bp Ori: QGP77550.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2404713-2405328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240471 3-2405328 bp Feature: domain Description: GIIM Note: maturase Location: 2405388-2405595 bp Feature: domain Description: GIIM Note: maturase Location: 2405388-2405595 bp Feature: gene Location: 2406029-2407495 bp Ori: QGP77369.1 Feature: domain Description: PRK09243 Location: 2406041-2407430 bp Feature: domain Description: PRK09243 Location: 2406041 -2407430 bp Feature: gene Location: 2407520-2408344 bp Ori: QGP77370.1 Gene: nadE Feature: domain Description: nadE Location: 2407529-2408330 bp Feature: domain Description: nadE Location: 2407529-2408330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), PS_pyruv_trans (pfam04230), ATP-synt_Fo_c_ATPE (cd18185), AtpB (COG0356), smpB (TIGR00086), RNase_R (TIGR02063), PgpA (pfam04608), MFS_LmrB_MDR_like (cd17503)
FepD (COG0609), NanE (pfam04131), PRK13805 (bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional), zinc_ribbon_2 (pfam13240), PRK06520 (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), rpoB (TIGR02013), Peptidase_C1_2 (pfam03051), GT8_A4GalT_like (cd04194), RsmG (COG0357)
ElaA (COG2153), PRK12451 (arginyl-tRNA synthetase; Reviewed), GlcU (COG4975), HTH_24 (pfam13412), Mga (pfam05043), PG_binding_4 (pfam12229), YkuD_like (cl21614), ldh (PRK00066), Pth (COG0193), Mfd (COG1197)
HTH_ARSR (smart00418), DUF1648 (pfam07853), SdpI (pfam13630), selD (TIGR00476), PRK11784 (tRNA 2-selenouridine synthase; Provisional), YceD (COG1399), RpmF (COG0333), DUF4352 (pfam11611), DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609)
Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_5 (pfam13102), INT_ICEBs1_C_like (cd01189), Zeta_toxin (pfam06414), cello_pts_IIC (TIGR00359), BglB (COG2723), PRK09243 (nicotinate phosphoribosyltransferase; Validated), nadE (TIGR00552)