myRT

myRT report for GCA_009720465.1_ASM972046v1

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Seq: CP041957.1 Escherichia coli strain EC2 plasmid pEC2_2, complete sequence (83648 bp)
Overview 1 RT 1: 11392-15746 bp 2 RT 2: 31650-35871 bp Neighborhood of RT #1 [11392, 15748] PRK13753 Multi_Drug_Res RVT-GII GIIM PRK13746 DUF1010 Neighborhood of RT #2 [31650, 35871] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 11392-12231 bp Ori: QGQ17642.1 Gene: sul1 Feature: domain Description: PRK13753 Location: 11395-12229 bp Feature: domain Description: PRK1 3753 Location: 1 1 395-1 2229 bp Feature: gene Location: 12225-12572 bp Ori: QGQ17643.1 Feature: domain Description: Multi_Drug_Res Location: 12234-12507 bp Feature: domain Description: Multi_Drug_Res Location: 1 2234-1 2507 bp Feature: gene Location: 13377-14630 bp Ori: QGQ17721.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13569-14193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3569-1 41 93 bp Feature: domain Description: GIIM Note: maturase Location: 14232-14451 bp Feature: domain Description: GIIM Note: maturase Location: 1 4232-1 4451 bp Feature: gene Location: 14706-15497 bp Ori: QGQ17644.1 Feature: domain Description: PRK13746 Location: 14709-15489 bp Feature: domain Description: PRK1 3746 Location: 1 4709-1 5489 bp Feature: gene Location: 15503-15748 bp Ori: QGQ17722.1 Feature: domain Description: DUF1010 Location: 15548-15746 bp Feature: domain Description: DUF1 01 0 Location: 1 5548-1 5746 bp Feature: gene Location: 31650-32072 bp Ori: QGQ17658.1 Feature: domain Description: DUF1380 Location: 31653-31950 bp Feature: domain Description: DUF1 380 Location: 31 653-31 950 bp Feature: gene Location: 32069-32260 bp Feature: gene Location: 32574-34241 bp Ori: QGQ17660.1 Gene: ltrA Feature: domain Description: RVT_N Location: 32622-32859 bp Feature: domain Description: RVT_N Location: 32622-32859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32910-33552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3291 0-33552 bp Feature: domain Description: GIIM Note: maturase Location: 33603-33837 bp Feature: domain Description: GIIM Note: maturase Location: 33603-33837 bp Feature: domain Description: HNHc Note: nucleases Location: 34047-34206 bp Feature: domain Description: HNHc Note: nucleases Location: 34047-34206 bp Feature: gene Location: 35121-35378 bp Feature: gene Location: 35641-35871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13753 (dihydropteroate synthase; Provisional), Multi_Drug_Res (pfam00893), RVT-GII, GIIM (pfam08388), PRK13746 (aminoglycoside resistance protein; Provisional), DUF1010 (pfam06231), DUF1380 (pfam07128), RVT_N (pfam13655), HNHc (smart00507)

Seq: CP041955.1 Escherichia coli strain EC2 chromosome, complete genome (4856183 bp)
Overview 1 RT 1: 564241-568003 bp 2 RT 2: 1868004-1874480 bp 3 RT 3: 2705516-2710952 bp 4 RT 4: 2869793-2872946 bp 5 RT 5: 2889072-2892937 bp Neighborhood of RT #1 [564241, 568005] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [1868004, 1874485] PRK15057 RVT_N RVT-GII GIIM HNHc PRK15414 GMP_PMI Neighborhood of RT #3 [2705516, 2710952] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [2869793, 2873343] RVT-GII GIIM InsE Neighborhood of RT #5 [2889072, 2892937] RVT-GII GIIM Feature: gene Location: 564241-564980 bp Feature: domain Description: InsE Location: 564244-564583 bp Feature: domain Description: InsE Location: 5642 44-564583 bp Feature: gene Location: 564973-565346 bp Feature: gene Location: 565655-567163 bp Ori: QGQ17382.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565913-566645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565913-566645 bp Feature: domain Description: GIIM Note: maturase Location: 566720-566918 bp Feature: domain Description: GIIM Note: maturase Location: 56672 0-566918 bp Feature: gene Location: 567253-567726 bp Feature: domain Description: PHA02517 Location: 567259-567724 bp Feature: domain Description: PHA02 517 Location: 5672 59-56772 4 bp Feature: gene Location: 567769-568005 bp Feature: domain Description: DUF1016_N Location: 567826-568003 bp Feature: domain Description: DUF1016_N Location: 56782 6-568003 bp Feature: gene Location: 1868004-1869170 bp Ori: QGQ14809.1 Feature: domain Description: PRK15057 Location: 1868007-1869168 bp Feature: domain Description: PRK15057 Location: 1868007-1869168 bp Feature: gene Location: 1869334-1869408 bp Feature: gene Location: 1869490-1871157 bp Ori: QGQ14810.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1869538-1869775 bp Feature: domain Description: RVT_N Location: 1869538-1869775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1869826-1870468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186982 6-1870468 bp Feature: domain Description: GIIM Note: maturase Location: 1870519-1870753 bp Feature: domain Description: GIIM Note: maturase Location: 1870519-1870753 bp Feature: domain Description: HNHc Note: nucleases Location: 1870963-1871122 bp Feature: domain Description: HNHc Note: nucleases Location: 1870963-187112 2 bp Feature: gene Location: 1871731-1873047 bp Ori: QGQ14811.1 Gene: cpsG Feature: domain Description: PRK15414 Location: 1871734-1873039 bp Feature: domain Description: PRK15414 Location: 1871734-1873039 bp Feature: gene Location: 1873070-1874485 bp Ori: QGQ14812.1 Feature: domain Description: GMP_PMI Location: 1873076-1874480 bp Feature: domain Description: GMP_PMI Location: 1873076-1874480 bp Feature: gene Location: 2705516-2706255 bp Feature: domain Description: InsE Location: 2705519-2705858 bp Feature: domain Description: InsE Location: 2 705519-2 705858 bp Feature: gene Location: 2706248-2706619 bp Feature: gene Location: 2706928-2708436 bp Ori: QGQ17465.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2707186-2707918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 707186-2 707918 bp Feature: domain Description: GIIM Note: maturase Location: 2707993-2708191 bp Feature: domain Description: GIIM Note: maturase Location: 2 707993-2 708191 bp Feature: gene Location: 2708527-2709000 bp Feature: domain Description: PHA02517 Location: 2708533-2708998 bp Feature: domain Description: PHA02 517 Location: 2 708533-2 708998 bp Feature: gene Location: 2709042-2710952 bp Feature: gene Location: 2869793-2870107 bp Feature: gene Location: 2870073-2870547 bp Feature: gene Location: 2870637-2872145 bp Ori: QGQ17477.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2870895-2871627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 870895-2 87162 7 bp Feature: domain Description: GIIM Note: maturase Location: 2871702-2871900 bp Feature: domain Description: GIIM Note: maturase Location: 2 871702 -2 871900 bp Feature: gene Location: 2872455-2872827 bp Feature: gene Location: 2872820-2873343 bp Feature: domain Description: InsE Location: 2872826-2872946 bp Feature: domain Description: InsE Location: 2 872 82 6-2 872 946 bp Feature: gene Location: 2889072-2889810 bp Feature: gene Location: 2889803-2890174 bp Feature: gene Location: 2890483-2891991 bp Ori: QGQ17478.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2890741-2891473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 890741-2 891473 bp Feature: domain Description: GIIM Note: maturase Location: 2891548-2891746 bp Feature: domain Description: GIIM Note: maturase Location: 2 891548-2 891746 bp Feature: gene Location: 2892081-2892555 bp Feature: gene Location: 2892598-2892937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), PRK15057 (UDP-glucose 6-dehydrogenase; Provisional), RVT_N (pfam13655), HNHc (smart00507), PRK15414 (phosphomannomutase), GMP_PMI (TIGR01479)

Seq: CP041959.1 Escherichia coli strain EC2 plasmid pEC2_4, complete sequence (84917 bp)
Overview 1 RT 1: 16267-20439 bp Neighborhood of RT #1 [16267, 20444] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 16267-16581 bp Feature: gene Location: 16762-16968 bp Feature: gene Location: 17617-19518 bp Ori: QGQ17749.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17884-18715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17884-18715 bp Feature: domain Description: Intron_maturas2 Location: 18829-19087 bp Feature: domain Description: Intron_maturas2 Location: 18829-19087 bp Feature: domain Description: HNHc Note: nucleases Location: 19261-19423 bp Feature: domain Description: HNHc Note: nucleases Location: 19261-19423 bp Feature: gene Location: 19668-20153 bp Ori: QGQ17750.1 Feature: domain Description: PRK13732 Location: 19671-20151 bp Feature: domain Description: PRK13 73 2 Location: 19671-20151 bp Feature: gene Location: 20211-20444 bp Ori: QGQ17751.1 Feature: domain Description: DUF905 Location: 20241-20439 bp Feature: domain Description: DUF905 Location: 20241-2043 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)