myRT

myRT report for GCA_009720525.1_ASM972052v1

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Seq: CP043930.1 Gimesia sp. E7 chromosome, complete genome (8027492 bp)
Overview 1 RT 1: 1043335-1050582 bp 2 RT 2: 1191771-1221035 bp 3 RT 3: 2486457-2493929 bp 4 RT 4: 4905296-4910771 bp 5 RT 5: 6400349-6403554 bp 6 RT 6: 6478137-6479958 bp Neighborhood of RT #1 [1043335, 1050582] DUF2048 DUF2048 RVT-CRISPR-like COG4453 Neighborhood of RT #2 [1191771, 1221037] STKc_PknB_like PEGA LRR_AMN1 KOG3864 Big_5 FG-GAP_2 FG-GAP_2 FG-GAP_2 FG-GAP_2 FG-GAP_2 FG-GAP_2 Big_9 Big_9 ZnMc_MMP_like_1 RVT-CRISPR-like HTTM DUF1501 Neighborhood of RT #3 [2486457, 2494009] MLE L-Ala-DL-Glu_epimerase S2P-M50_SpoIVFB RVT-Retrons PRK07561 Neighborhood of RT #4 [4905296, 4910771] ycf46 RVT-GII Intron_maturas2 ycf46 Neighborhood of RT #5 [6400349, 6403844] Transposase_mut RVT-GII rve_3 HTH_23 Neighborhood of RT #6 [6478137, 6479958] RVT-GII GIIM Feature: gene Location: 1043335-1044396 bp Ori: QGQ21934.1 Feature: domain Description: DUF2048 Location: 1043542-1044025 bp Feature: domain Description: DUF2048 Location: 1 043542-1 044025 bp Feature: domain Description: DUF2048 Location: 1044121-1044337 bp Feature: domain Description: DUF2048 Location: 1 0441 21 -1 044337 bp Feature: gene Location: 1045676-1047133 bp Feature: gene Location: 1047489-1048811 bp Ori: QGQ21936.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1047852-1048392 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 047852-1 048392 bp Feature: gene Location: 1049475-1049711 bp Ori: QGQ21937.1 Feature: domain Description: COG4453 Location: 1049517-1049655 bp Feature: domain Description: COG4453 Location: 1 04951 7-1 049655 bp Feature: gene Location: 1049875-1050582 bp Feature: gene Location: 1191771-1194380 bp Ori: QGQ22043.1 Feature: domain Description: STKc_PknB_like Location: 1191981-1192776 bp Feature: domain Description: STKc_PknB_like Location: 1 1 91 981 -1 1 92776 bp Feature: domain Description: PEGA Location: 1193175-1193319 bp Feature: domain Description: PEGA Location: 1 1 931 75-1 1 9331 9 bp Feature: domain Description: LRR_AMN1 Location: 1193565-1194123 bp Feature: domain Description: LRR_AMN1 Location: 1 1 93565-1 1 941 23 bp Feature: domain Description: KOG3864 Location: 1194165-1194360 bp Feature: domain Description: KOG3864 Location: 1 1 941 65-1 1 94360 bp Feature: gene Location: 1194690-1216538 bp Ori: QGQ22044.1 Feature: domain Description: Big_5 Location: 1194852-1195149 bp Feature: domain Description: Big_5 Location: 1 1 94852-1 1 951 49 bp Feature: domain Description: FG-GAP_2 Location: 1197537-1197648 bp Feature: domain Description: FG-GAP_2 Location: 1 1 97537-1 1 97648 bp Feature: domain Description: FG-GAP_2 Location: 1197756-1197849 bp Feature: domain Description: FG-GAP_2 Location: 1 1 97756-1 1 97849 bp Feature: domain Description: FG-GAP_2 Location: 1197978-1198080 bp Feature: domain Description: FG-GAP_2 Location: 1 1 97978-1 1 98080 bp Feature: domain Description: FG-GAP_2 Location: 1198113-1198242 bp Feature: domain Description: FG-GAP_2 Location: 1 1 981 1 3-1 1 98242 bp Feature: domain Description: FG-GAP_2 Location: 1198287-1198389 bp Feature: domain Description: FG-GAP_2 Location: 1 1 98287-1 1 98389 bp Feature: domain Description: FG-GAP_2 Location: 1198461-1198557 bp Feature: domain Description: FG-GAP_2 Location: 1 1 98461 -1 1 98557 bp Feature: domain Description: Big_9 Location: 1214727-1214862 bp Feature: domain Description: Big_9 Location: 1 21 4727-1 21 4862 bp Feature: domain Description: Big_9 Location: 1214916-1215201 bp Feature: domain Description: Big_9 Location: 1 21 491 6-1 21 5201 bp Feature: domain Description: ZnMc_MMP_like_1 Location: 1216356-1216425 bp Feature: domain Description: ZnMc_MMP_like_1 Location: 1 21 6356-1 21 6425 bp Feature: gene Location: 1217210-1218139 bp Ori: QGQ22045.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1217216-1217762 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 21 721 6-1 21 7762 bp Feature: gene Location: 1219089-1220474 bp Ori: QGQ22046.1 Feature: domain Description: HTTM Location: 1219275-1219992 bp Feature: domain Description: HTTM Location: 1 21 9275-1 21 9992 bp Feature: gene Location: 1220618-1221037 bp Feature: domain Description: DUF1501 Location: 1220633-1221035 bp Feature: domain Description: DUF1 501 Location: 1 220633-1 221 035 bp Feature: gene Location: 2486457-2487809 bp Ori: QGQ22858.1 Feature: domain Description: MLE Location: 2486508-2486661 bp Feature: domain Description: MLE Location: 2486508-2486661 bp Feature: domain Description: L-Ala-DL-Glu_epimerase Location: 2487141-2487603 bp Feature: domain Description: L-Ala-DL-Glu_epimerase Location: 24871 41 -2487603 bp Feature: gene Location: 2487834-2488529 bp Ori: QGQ22859.1 Feature: domain Description: S2P-M50_SpoIVFB Location: 2487906-2488521 bp Feature: domain Description: S2P-M50_SpoIVFB Location: 2487906-2488521 bp Feature: gene Location: 2489298-2490350 bp Ori: QGQ22860.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2489508-2490123 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2489508-24901 23 bp Feature: gene Location: 2490574-2491218 bp Feature: gene Location: 2491298-2494009 bp Ori: QGQ26932.1 Gene: topA Feature: domain Description: PRK07561 Location: 2491304-2493929 bp Feature: domain Description: PRK07561 Location: 2491 304-2493929 bp Feature: gene Location: 4905296-4905856 bp Feature: gene Location: 4905902-4906813 bp Ori: QGQ24645.1 Feature: domain Description: ycf46 Location: 4905932-4906805 bp Feature: domain Description: ycf46 Location: 4905932-4906805 bp Feature: gene Location: 4907266-4909101 bp Ori: QGQ24646.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4907578-4908373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4907578-4908373 bp Feature: domain Description: Intron_maturas2 Location: 4908520-4908718 bp Feature: domain Description: Intron_maturas2 Location: 4908520-490871 8 bp Feature: gene Location: 4909082-4909804 bp Ori: QGQ24647.1 Feature: domain Description: ycf46 Location: 4909154-4909703 bp Feature: domain Description: ycf46 Location: 49091 54-4909703 bp Feature: gene Location: 4909827-4910771 bp Feature: gene Location: 6400349-6400651 bp Feature: gene Location: 6400801-6401955 bp Ori: QGQ25688.1 Feature: domain Description: Transposase_mut Location: 6400855-6401932 bp Feature: domain Description: Transposase_mut Location: 6400855-6401 932 bp Feature: gene Location: 6402186-6402914 bp Ori: QGQ25689.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6402522-6402900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6402522-6402900 bp Feature: gene Location: 6402833-6403093 bp Ori: QGQ27087.1 Feature: domain Description: rve_3 Location: 6402839-6403022 bp Feature: domain Description: rve_3 Location: 6402839-6403022 bp Feature: gene Location: 6403344-6403844 bp Ori: QGQ25690.1 Feature: domain Description: HTH_23 Location: 6403428-6403554 bp Feature: domain Description: HTH_23 Location: 6403428-6403554 bp Feature: gene Location: 6478137-6479463 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6478389-6479004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6478389-6479004 bp Feature: domain Description: GIIM Note: maturase Location: 6479052-6479265 bp Feature: domain Description: GIIM Note: maturase Location: 6479052-6479265 bp Feature: gene Location: 6479463-6479675 bp Feature: gene Location: 6479776-6479958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2048 (pfam09752), RVT-CRISPR, COG4453 (Uncharacterized conserved protein, DUF1778 family ), STKc_PknB_like (cd14014), PEGA (pfam08308), LRR_AMN1 (sd00034), KOG3864 (KOG3864, Uncharacterized conserved protein ), Big_5 (pfam13205), FG-GAP_2 (pfam14312), Big_9 (pfam17963)
ZnMc_MMP_like_1 (cd04279), HTTM (smart00752), DUF1501 (pfam07394), MLE (cd03318), L-Ala-DL-Glu_epimerase (cd03319), S2P-M50_SpoIVFB (cd06161), RVT-Retrons, PRK07561 (DNA topoisomerase I subunit omega; Validated), ycf46 (CHL00195), RVT-GII
Intron_maturas2 (pfam01348), Transposase_mut (pfam00872), rve_3 (pfam13683), HTH_23 (pfam13384), GIIM (pfam08388)