myRT

myRT report for GCA_009728565.1_ASM972856v1

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Seq: CP023164.1 Escherichia coli O22:H8 strain RM10809-3 plasmid pRM10809-3, complete sequence (122641 bp)
Overview 1 RT 1: 96747-101717 bp Neighborhood of RT #1 [96747, 101775] DUF1380 PRK13699 RVT_N RVT-GII GIIM DUF1281 DUF1281_C Feature: gene Location: 96747-97181 bp Ori: QGQ64195.1 Feature: domain Description: DUF1380 Location: 96750-97155 bp Feature: domain Description: DUF1 380 Location: 96750-971 55 bp Feature: gene Location: 97416-98068 bp Feature: domain Description: PRK13699 Location: 97461-97671 bp Feature: domain Description: PRK1 3699 Location: 97461 -97671 bp Feature: gene Location: 98648-100347 bp Gene: ltrA Feature: domain Description: RVT_N Location: 98702-98945 bp Feature: domain Description: RVT_N Location: 98702-98945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98990-99626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98990-99626 bp Feature: domain Description: GIIM Note: maturase Location: 99677-99911 bp Feature: domain Description: GIIM Note: maturase Location: 99677-9991 1 bp Feature: gene Location: 100571-100873 bp Feature: gene Location: 100877-101775 bp Feature: domain Description: DUF1281 Location: 100946-101327 bp Feature: domain Description: DUF1 281 Location: 1 00946-1 01 327 bp Feature: domain Description: DUF1281_C Location: 101492-101717 bp Feature: domain Description: DUF1 281 _C Location: 1 01 492-1 01 71 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: CP023165.1 Escherichia coli O22:H8 strain RM10809-3 chromosome, complete genome (5128479 bp)
Overview 1 RT 1: 1490115-1498718 bp Neighborhood of RT #1 [1490115, 1498720] PRK11468 PRK11388 RVT_N RVT-GII GIIM HNHc PRK11388 autotrans_barl Feature: gene Location: 1490115-1491185 bp Gene: dhaK Feature: domain Description: PRK11468 Location: 1490118-1491183 bp Feature: domain Description: PRK11468 Location: 1490118-1491183 bp Feature: gene Location: 1491413-1492165 bp Feature: domain Description: PRK11388 Location: 1491416-1492163 bp Feature: domain Description: PRK11388 Location: 1491416-1492 163 bp Feature: gene Location: 1492247-1493947 bp Ori: QGQ65571.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1492301-1492544 bp Feature: domain Description: RVT_N Location: 1492 301-1492 544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1492589-1493225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1492 589-14932 2 5 bp Feature: domain Description: GIIM Note: maturase Location: 1493276-1493510 bp Feature: domain Description: GIIM Note: maturase Location: 14932 76-1493510 bp Feature: domain Description: HNHc Note: nucleases Location: 1493741-1493891 bp Feature: domain Description: HNHc Note: nucleases Location: 1493741-1493891 bp Feature: gene Location: 1494569-1495735 bp Gene: dhaR Feature: domain Description: PRK11388 Location: 1494572-1495727 bp Feature: domain Description: PRK11388 Location: 1494572 -149572 7 bp Feature: gene Location: 1495835-1498720 bp Ori: QGQ65572.1 Feature: domain Description: autotrans_barl Location: 1497374-1498718 bp Feature: domain Description: autotrans_barl Location: 1497374-1498718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11468 (dihydroxyacetone kinase subunit DhaK; Provisional), PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), autotrans_barl (TIGR01414)