myRT

myRT report for GCA_009729935.1_ASM972993v1

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Seq: CP046279.1 Salmonella enterica strain FDAARGOS_707 chromosome, complete genome (4556079 bp)
Overview 1 RT 1: 2417143-2424365 bp Neighborhood of RT #1 [2417143, 2424388] DUF5375 Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 HTH_Tnp_1 CsgD Feature: gene Location: 2417143-2417463 bp Ori: QGR38321.1 Feature: domain Description: DUF5375 Location: 2417146-2417461 bp Feature: domain Description: DUF5375 Location: 241 71 46-241 7461 bp Feature: gene Location: 2417478-2419811 bp Ori: QGR38322.1 Feature: domain Description: Prim_Zn_Ribbon Location: 2417568-2417676 bp Feature: domain Description: Prim_Zn_Ribbon Location: 241 7568-241 7676 bp Feature: domain Description: COG3378 Location: 2418294-2419803 bp Feature: domain Description: COG3378 Location: 241 8294-241 9803 bp Feature: gene Location: 2420424-2422031 bp Ori: QGR40233.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2420715-2421312 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 242071 5-2421 31 2 bp Feature: domain Description: TIR_2 Location: 2421636-2421996 bp Feature: domain Description: TIR_2 Location: 2421 636-2421 996 bp Feature: gene Location: 2422179-2422518 bp Feature: domain Description: HTH_Tnp_1 Location: 2422194-2422311 bp Feature: domain Description: HTH_Tnp_1 Location: 24221 94-242231 1 bp Feature: gene Location: 2423771-2424388 bp Ori: QGR38323.1 Feature: domain Description: CsgD Location: 2424191-2424365 bp Feature: domain Description: CsgD Location: 24241 91 -2424365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), HTH_Tnp_1 (pfam01527), CsgD (COG2771)