myRT

myRT report for GCA_009729995.1_ASM972999v1

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Seq: CP046286.1 Shigella sonnei strain FDAARGOS_715 chromosome, complete genome (4877883 bp)
Overview 1 RT 1: 2929012-2932600 bp Neighborhood of RT #1 [2929012, 2932997] zinc_ribbon_11 PHA02517 RVT-GII GIIM InsE Feature: gene Location: 2929012-2929437 bp Ori: QGR51795.1 Feature: domain Description: zinc_ribbon_11 Location: 2929054-2929372 bp Feature: domain Description: zinc_ribbon_1 1 Location: 2929054-2929372 bp Feature: gene Location: 2929514-2929987 bp Feature: domain Description: PHA02517 Location: 2929520-2929985 bp Feature: domain Description: PHA0251 7 Location: 2929520-2929985 bp Feature: gene Location: 2930077-2931585 bp Ori: QGR53477.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2930335-2931067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2930335-2931 067 bp Feature: domain Description: GIIM Note: maturase Location: 2931142-2931340 bp Feature: domain Description: GIIM Note: maturase Location: 2931 1 42-2931 340 bp Feature: gene Location: 2931894-2932265 bp Feature: gene Location: 2932258-2932997 bp Feature: domain Description: InsE Location: 2932261-2932600 bp Feature: domain Description: InsE Location: 2932261 -2932600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zinc_ribbon_11 (pfam11682), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: CP046285.1 Shigella sonnei strain FDAARGOS_715 plasmid unnamed1, complete sequence (213386 bp)
Overview 1 RT 1: 9003-12929 bp 2 RT 2: 90113-94561 bp 3 RT 3: 182766-185376 bp 4 RT 4: 194883-198600 bp Neighborhood of RT #1 [9003, 12973] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 DUF1472 Neighborhood of RT #2 [90113, 94611] COG3547 DDE_Tnp_IS66_C RVT-GII COG4584 PRK09183 Neighborhood of RT #3 [182766, 185817] Y2_Tnp RVT-GII InsE Neighborhood of RT #4 [194883, 198600] OrfB_IS605 DDE_Tnp_IS66_C RVT-GII GIIM RVT-GII PRK09413 Feature: gene Location: 9003-10034 bp Ori: QGR49299.1 Feature: domain Description: HTH_23 Location: 9081-9222 bp Feature: domain Description: HTH_2 3 Location: 9081-92 2 2 bp Feature: domain Description: HTH_33 Location: 9327-9474 bp Feature: domain Description: HTH_33 Location: 932 7-9474 bp Feature: domain Description: DDE_3 Location: 9531-9951 bp Feature: domain Description: DDE_3 Location: 9531-9951 bp Feature: gene Location: 10202-10846 bp Ori: QGR49442.1 Feature: domain Description: HTH_23 Location: 10286-10373 bp Feature: domain Description: HTH_2 3 Location: 102 86-10373 bp Feature: domain Description: InsE Location: 10502-10697 bp Feature: domain Description: InsE Location: 10502 -10697 bp Feature: gene Location: 10940-11587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11075-11561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11075-11561 bp Feature: gene Location: 11586-12368 bp Feature: domain Description: DDE_Tnp_1 Location: 11592-12300 bp Feature: domain Description: DDE_Tnp_1 Location: 11592 -12 300 bp Feature: gene Location: 12539-12973 bp Feature: domain Description: DUF1472 Location: 12629-12929 bp Feature: domain Description: DUF1472 Location: 12 62 9-12 92 9 bp Feature: gene Location: 90113-90595 bp Feature: domain Description: COG3547 Location: 90131-90563 bp Feature: domain Description: COG3547 Location: 90131-90563 bp Feature: gene Location: 90625-90804 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 90670-90781 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 90670-90781 bp Feature: gene Location: 90887-92013 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90986-91445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90986-91445 bp Feature: gene Location: 92642-93814 bp Ori: QGR49353.1 Feature: domain Description: COG4584 Location: 92645-93482 bp Feature: domain Description: COG4584 Location: 92 645-93482 bp Feature: gene Location: 93814-94611 bp Ori: QGR49354.1 Feature: domain Description: PRK09183 Location: 93826-94561 bp Feature: domain Description: PRK09183 Location: 9382 6-94561 bp Feature: gene Location: 182766-183195 bp Feature: domain Description: Y2_Tnp Location: 182775-182946 bp Feature: domain Description: Y2 _Tnp Location: 182 775-182 946 bp Feature: gene Location: 183243-183608 bp Feature: gene Location: 184328-184567 bp Ori: QGR49426.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184334-184541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184334-184541 bp Feature: gene Location: 184762-185128 bp Feature: gene Location: 185130-185817 bp Feature: domain Description: InsE Location: 185133-185376 bp Feature: domain Description: InsE Location: 185133-185376 bp Feature: gene Location: 194883-195053 bp Feature: domain Description: OrfB_IS605 Location: 194889-195051 bp Feature: domain Description: OrfB_IS605 Location: 194889-195051 bp Feature: gene Location: 195132-195245 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 195135-195225 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 195135-1952 2 5 bp Feature: gene Location: 195379-195906 bp Ori: QGR49430.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195385-195529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195385-19552 9 bp Feature: domain Description: GIIM Note: maturase Location: 195613-195829 bp Feature: domain Description: GIIM Note: maturase Location: 195613-19582 9 bp Feature: gene Location: 195990-197392 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196350-197007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196350-197007 bp Feature: gene Location: 198600-198960 bp Ori: QGR49431.1 Feature: domain Description: PRK09413 Location: 198648-198960 bp Feature: domain Description: PRK09413 Location: 198648-198960 bp Feature: gene Location: 197687-198600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609), DUF1472 (pfam07339), COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), COG4584 (Transposase )
PRK09183 (transposase/IS protein; Provisional), Y2_Tnp (pfam04986), OrfB_IS605 (pfam01385), GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)