myRT

myRT report for GCA_009730275.1_ASM973027v1

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Seq: CP046311.1 Lactobacillus crispatus strain FDAARGOS_743 chromosome, complete genome (2373487 bp)
Overview 1 RT 1: 1273633-1279522 bp 2 RT 2: 1370421-1374188 bp 3 RT 3: 1415806-1420773 bp 4 RT 4: 1445345-1451608 bp 5 RT 5: 1477310-1481426 bp 6 RT 6: 1734545-1740365 bp Neighborhood of RT #1 [1273633, 1279593] Acyl_transf_3 PRK01237 RVT-GII GIIM GlpF PhoE Neighborhood of RT #2 [1370421, 1374188] DDE_Tnp_1_3 RVT-GII TIGR02452 SlpA Neighborhood of RT #3 [1415806, 1420772] ECF_trnsprt PRK05439 RVT-GII GIIM OsmC PBP2_Lactococcal_OppA_like Neighborhood of RT #4 [1445345, 1451670] DDE_5 InsG LPXTG_anchor RVT-GII GIIM BI-1-like_bacterial Transposase_mut Neighborhood of RT #5 [1477310, 1481434] Tra8 group_II_RT_mat RVT-GII ribH PRK09311 Neighborhood of RT #6 [1734545, 1740394] Transposase_mut PRK14822 RVT-GII GIIM MPP_GpdQ CNP_C_terminal Feature: gene Location: 1273633-1274751 bp Ori: QGS05713.1 Feature: domain Description: Acyl_transf_3 Location: 1273681-1274683 bp Feature: domain Description: Acyl_transf_3 Location: 1 273681 -1 274683 bp Feature: gene Location: 1274857-1275675 bp Ori: QGS05714.1 Feature: domain Description: PRK01237 Location: 1274863-1275664 bp Feature: domain Description: PRK01 237 Location: 1 274863-1 275664 bp Feature: gene Location: 1276272-1277570 bp Ori: QGS05715.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1276473-1277091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 276473-1 277091 bp Feature: domain Description: GIIM Note: maturase Location: 1277148-1277355 bp Feature: domain Description: GIIM Note: maturase Location: 1 2771 48-1 277355 bp Feature: gene Location: 1277853-1278605 bp Ori: QGS05716.1 Feature: domain Description: GlpF Location: 1277862-1278594 bp Feature: domain Description: GlpF Location: 1 277862-1 278594 bp Feature: gene Location: 1279027-1279593 bp Ori: QGS05717.1 Feature: domain Description: PhoE Location: 1279030-1279522 bp Feature: domain Description: PhoE Location: 1 279030-1 279522 bp Feature: gene Location: 1370421-1370912 bp Feature: gene Location: 1370930-1371787 bp Ori: QGS05803.1 Feature: domain Description: DDE_Tnp_1_3 Location: 1371263-1371668 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 1 371 263-1 371 668 bp Feature: gene Location: 1371997-1372536 bp Ori: QGS05804.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1372000-1372225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 372000-1 372225 bp Feature: domain Description: TIGR02452 Location: 1372360-1372522 bp Feature: domain Description: TIGR02452 Location: 1 372360-1 372522 bp Feature: gene Location: 1372621-1373415 bp Ori: QGS05805.1 Feature: domain Description: SlpA Location: 1373251-1373407 bp Feature: domain Description: SlpA Location: 1 373251 -1 373407 bp Feature: gene Location: 1373595-1374188 bp Feature: gene Location: 1415806-1416420 bp Ori: QGS05847.1 Feature: domain Description: ECF_trnsprt Location: 1415836-1416388 bp Feature: domain Description: ECF_trnsprt Location: 1 41 5836-1 41 6388 bp Feature: gene Location: 1416421-1417338 bp Ori: QGS05848.1 Feature: domain Description: PRK05439 Location: 1416427-1417333 bp Feature: domain Description: PRK05439 Location: 1 41 6427-1 41 7333 bp Feature: gene Location: 1417944-1419242 bp Ori: QGS05849.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1418145-1418763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 81 45-1 41 8763 bp Feature: domain Description: GIIM Note: maturase Location: 1418820-1419027 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 8820-1 41 9027 bp Feature: gene Location: 1419433-1419834 bp Ori: QGS05850.1 Feature: domain Description: OsmC Location: 1419535-1419826 bp Feature: domain Description: OsmC Location: 1 41 9535-1 41 9826 bp Feature: gene Location: 1420485-1420772 bp Feature: domain Description: PBP2_Lactococcal_OppA_like Location: 1420632-1420773 bp Feature: domain Description: PBP2_Lactococcal_OppA_like Location: 1 420632-1 420773 bp Feature: gene Location: 1445345-1446694 bp Ori: QGS05871.1 Feature: domain Description: DDE_5 Location: 1445543-1446110 bp Feature: domain Description: DDE_5 Location: 1 445543-1 4461 1 0 bp Feature: domain Description: InsG Location: 1446131-1446404 bp Feature: domain Description: InsG Location: 1 4461 31 -1 446404 bp Feature: gene Location: 1446746-1447348 bp Ori: QGS05872.1 Feature: domain Description: LPXTG_anchor Location: 1447244-1447346 bp Feature: domain Description: LPXTG_anchor Location: 1 447244-1 447346 bp Feature: gene Location: 1447958-1449256 bp Ori: QGS05873.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1448159-1448777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4481 59-1 448777 bp Feature: domain Description: GIIM Note: maturase Location: 1448834-1449041 bp Feature: domain Description: GIIM Note: maturase Location: 1 448834-1 449041 bp Feature: gene Location: 1449519-1450235 bp Feature: domain Description: BI-1-like_bacterial Location: 1449576-1450215 bp Feature: domain Description: BI-1 -like_bacterial Location: 1 449576-1 45021 5 bp Feature: gene Location: 1450492-1451670 bp Ori: QGS05874.1 Feature: domain Description: Transposase_mut Location: 1450531-1451608 bp Feature: domain Description: Transposase_mut Location: 1 450531 -1 451 608 bp Feature: gene Location: 1477310-1478139 bp Feature: domain Description: Tra8 Location: 1477340-1478072 bp Feature: domain Description: Tra8 Location: 1 477340-1 478072 bp Feature: gene Location: 1478894-1479076 bp Ori: QGS05896.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1478927-1479047 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 478927-1 479047 bp Feature: gene Location: 1479088-1479699 bp Ori: QGS05897.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1479091-1479283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 479091 -1 479283 bp Feature: gene Location: 1479777-1480241 bp Ori: QGS05898.1 Feature: domain Description: ribH Location: 1479780-1480236 bp Feature: domain Description: ribH Location: 1 479780-1 480236 bp Feature: gene Location: 1480256-1481434 bp Ori: QGS05899.1 Feature: domain Description: PRK09311 Location: 1480265-1481426 bp Feature: domain Description: PRK0931 1 Location: 1 480265-1 481 426 bp Feature: gene Location: 1734545-1735723 bp Ori: QGS06103.1 Feature: domain Description: Transposase_mut Location: 1734584-1735661 bp Feature: domain Description: Transposase_mut Location: 1 734584-1 735661 bp Feature: gene Location: 1735977-1736600 bp Ori: QGS06104.1 Feature: domain Description: PRK14822 Location: 1735980-1736568 bp Feature: domain Description: PRK1 4822 Location: 1 735980-1 736568 bp Feature: gene Location: 1737271-1738569 bp Ori: QGS06105.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1737472-1738090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 737472-1 738090 bp Feature: domain Description: GIIM Note: maturase Location: 1738147-1738354 bp Feature: domain Description: GIIM Note: maturase Location: 1 7381 47-1 738354 bp Feature: gene Location: 1738675-1739112 bp Feature: gene Location: 1739162-1740394 bp Ori: QGS06107.1 Feature: domain Description: MPP_GpdQ Location: 1739300-1739912 bp Feature: domain Description: MPP_GpdQ Location: 1 739300-1 73991 2 bp Feature: domain Description: CNP_C_terminal Location: 1740044-1740365 bp Feature: domain Description: CNP_C_terminal Location: 1 740044-1 740365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acyl_transf_3 (pfam01757), PRK01237 (triphosphoribosyl-dephospho-CoA synthase; Validated), RVT-GII, GIIM (pfam08388), GlpF (COG0580), PhoE (COG0406), DDE_Tnp_1_3 (pfam13612), TIGR02452 (TIGR02452 family protein), SlpA (COG1047), ECF_trnsprt (pfam12822)
PRK05439 (pantothenate kinase; Provisional), OsmC (pfam02566), PBP2_Lactococcal_OppA_like (cd08510), DDE_5 (pfam13546), InsG (COG3385), LPXTG_anchor (TIGR01167), BI-1-like_bacterial (cd10432), Transposase_mut (pfam00872), Tra8 (COG2826), group_II_RT_mat (TIGR04416)
ribH (PRK00061), PRK09311 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II), PRK14822 (XTP/dITP diphosphatase), MPP_GpdQ (cd07402), CNP_C_terminal (pfam17839)