myRT

myRT report for GCA_009730455.1_ASM973045v1

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Seq: CP046331.1 Cupriavidus metallidurans strain FDAARGOS_675 chromosome, complete genome (3928086 bp)
Overview 1 RT 1: 1160308-1165840 bp 2 RT 2: 2221172-2230912 bp 3 RT 3: 3767785-3772153 bp Neighborhood of RT #1 [1160308, 1165845] gpsA PRK05751 RVT_N RVT-GII GIIM HNHc GRX_bact PspE Neighborhood of RT #2 [2221172, 2230926] ileS PRK05627 RVT_N RVT-GII GIIM HNHc BaeS PRK15347 CitB Neighborhood of RT #3 [3767785, 3772153] HTH_XRE RVT-Retrons KAP_NTPase Feature: gene Location: 1160308-1161336 bp Ori: QGS28507.1 Feature: domain Description: gpsA Location: 1160311-1161319 bp Feature: domain Description: gpsA Location: 1 1 6031 1 -1 1 61 31 9 bp Feature: gene Location: 1161455-1161973 bp Ori: QGS28508.1 Gene: secB Feature: domain Description: PRK05751 Location: 1161464-1161917 bp Feature: domain Description: PRK05751 Location: 1 1 61 464-1 1 61 91 7 bp Feature: gene Location: 1162132-1163847 bp Ori: QGS28509.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1162189-1162432 bp Feature: domain Description: RVT_N Location: 1 1 621 89-1 1 62432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1162477-1163125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 62477-1 1 631 25 bp Feature: domain Description: GIIM Note: maturase Location: 1163179-1163410 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 631 79-1 1 6341 0 bp Feature: domain Description: HNHc Note: nucleases Location: 1163629-1163794 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 63629-1 1 63794 bp Feature: gene Location: 1165096-1165353 bp Ori: QGS28510.1 Gene: grxC Feature: domain Description: GRX_bact Location: 1165108-1165345 bp Feature: domain Description: GRX_bact Location: 1 1 651 08-1 1 65345 bp Feature: gene Location: 1165432-1165845 bp Ori: QGS28511.1 Feature: domain Description: PspE Location: 1165546-1165840 bp Feature: domain Description: PspE Location: 1 1 65546-1 1 65840 bp Feature: gene Location: 2221172-2224051 bp Ori: QGS29410.1 Gene: ileS Feature: domain Description: ileS Location: 2221205-2224019 bp Feature: domain Description: ileS Location: 2221 205-222401 9 bp Feature: gene Location: 2224171-2225154 bp Ori: QGS29411.1 Feature: domain Description: PRK05627 Location: 2224180-2225092 bp Feature: domain Description: PRK05627 Location: 22241 80-2225092 bp Feature: gene Location: 2225278-2226978 bp Ori: QGS29412.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2225335-2225575 bp Feature: domain Description: RVT_N Location: 2225335-2225575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2225623-2226271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2225623-2226271 bp Feature: domain Description: GIIM Note: maturase Location: 2226328-2226556 bp Feature: domain Description: GIIM Note: maturase Location: 2226328-2226556 bp Feature: domain Description: HNHc Note: nucleases Location: 2226781-2226940 bp Feature: domain Description: HNHc Note: nucleases Location: 2226781 -2226940 bp Feature: gene Location: 2228411-2230201 bp Ori: QGS30946.1 Feature: domain Description: BaeS Location: 2228648-2229761 bp Feature: domain Description: BaeS Location: 2228648-2229761 bp Feature: domain Description: PRK15347 Location: 2229845-2230169 bp Feature: domain Description: PRK1 5347 Location: 2229845-22301 69 bp Feature: gene Location: 2230267-2230926 bp Ori: QGS29413.1 Feature: domain Description: CitB Location: 2230291-2230912 bp Feature: domain Description: CitB Location: 2230291 -223091 2 bp Feature: gene Location: 3767785-3768024 bp Feature: gene Location: 3768077-3768382 bp Ori: QGS30669.1 Feature: domain Description: HTH_XRE Location: 3768089-3768251 bp Feature: domain Description: HTH_XRE Location: 3768089-3768251 bp Feature: gene Location: 3768348-3769319 bp Ori: QGS30670.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3768498-3769062 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3768498-3769062 bp Feature: gene Location: 3769338-3771272 bp Ori: QGS30671.1 Feature: domain Description: KAP_NTPase Location: 3769392-3770481 bp Feature: domain Description: KAP_NTPase Location: 3769392-3770481 bp Feature: gene Location: 3771272-3772153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gpsA (PRK00094), PRK05751 (preprotein translocase subunit SecB; Validated), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), GRX_bact (TIGR02181), PspE (COG0607), ileS (TIGR00392), PRK05627 (bifunctional riboflavin kinase/FAD synthetase)
BaeS (COG0642), PRK15347 (two component system sensor kinase), CitB (TIGR02484), HTH_XRE (smart00530), RVT-Retrons, KAP_NTPase (pfam07693)