myRT

myRT report for GCA_009730575.1_ASM973057v1

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Seq: CP046329.1 Shewanella putrefaciens strain FDAARGOS_681 chromosome, complete genome (4659617 bp)
Overview 1 RT 1: 370798-374362 bp 2 RT 2: 2289341-2295927 bp Neighborhood of RT #1 [370798, 374439] InsE RVT-GII GIIM DUF2057 Neighborhood of RT #2 [2289341, 2296700] PRK09692 INT_Rci_Hp1_C RVT-Retrons AAA_15 Phage_GPA Feature: gene Location: 370798-371053 bp Ori: QGS47717.1 Feature: domain Description: InsE Location: 370801-371047 bp Feature: domain Description: InsE Location: 370801 -371 047 bp Feature: gene Location: 371053-371981 bp Feature: gene Location: 371978-373042 bp Ori: QGS47718.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371996-372653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 996-372653 bp Feature: domain Description: GIIM Note: maturase Location: 372737-372953 bp Feature: domain Description: GIIM Note: maturase Location: 372737-372953 bp Feature: gene Location: 373116-373343 bp Feature: gene Location: 374005-374439 bp Ori: QGS47719.1 Feature: domain Description: DUF2057 Location: 374068-374362 bp Feature: domain Description: DUF2057 Location: 374068-374362 bp Feature: gene Location: 2289341-2290672 bp Ori: QGS49273.1 Feature: domain Description: PRK09692 Location: 2289386-2289863 bp Feature: domain Description: PRK09692 Location: 2289386-2289863 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2289974-2290511 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 2289974-229051 1 bp Feature: gene Location: 2290673-2290855 bp Feature: gene Location: 2291175-2292326 bp Ori: QGS49275.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2291340-2291937 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2291 340-2291 937 bp Feature: gene Location: 2292460-2294694 bp Ori: QGS49276.1 Feature: domain Description: AAA_15 Location: 2292463-2293465 bp Feature: domain Description: AAA_1 5 Location: 2292463-2293465 bp Feature: gene Location: 2294778-2296700 bp Ori: QGS49277.1 Feature: domain Description: Phage_GPA Location: 2295033-2295927 bp Feature: domain Description: Phage_GPA Location: 2295033-2295927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), DUF2057 (pfam09829), PRK09692 (Integrase; provisional), INT_Rci_Hp1_C (cd00796), RVT-Retrons, AAA_15 (pfam13175), Phage_GPA (pfam05840)