myRT

myRT report for GCA_009731425.1_Lbkm_1.0

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Seq: AP018794.1 Lachnospiraceae bacterium KM106-2 DNA, complete genome (4521945 bp)
Overview 1 RT 1: 1113468-1120440 bp 2 RT 2: 1360523-1365504 bp 3 RT 3: 3050884-3061471 bp Neighborhood of RT #1 [1113468, 1120440] VanZ RVT-Retrons Neighborhood of RT #2 [1360523, 1365539] TIR_2 RVT-Retrons F1-ATPase_delta Neighborhood of RT #3 [3050884, 3061506] Sortase_D_2 RVT_N RVT-GII GIIM COG4646 HELICc YtxK COG4646 DEXDc Feature: gene Location: 1113468-1114565 bp Ori: BBF42398.1 Feature: domain Description: VanZ Location: 1113630-1113984 bp Feature: domain Description: VanZ Location: 1 1 1 3630-1 1 1 3984 bp Feature: gene Location: 1115328-1116335 bp Feature: gene Location: 1116335-1117516 bp Ori: BBF42400.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1116737-1117271 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 1 6737-1 1 1 7271 bp Feature: gene Location: 1117791-1117907 bp Feature: gene Location: 1119196-1120440 bp Feature: gene Location: 1360523-1360828 bp Ori: BBF42624.1 Feature: domain Description: TIR_2 Location: 1360529-1360697 bp Feature: domain Description: TIR_2 Location: 1 360529-1 360697 bp Feature: gene Location: 1361019-1361576 bp Feature: gene Location: 1361577-1363577 bp Ori: BBF42626.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1362753-1363266 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 362753-1 363266 bp Feature: gene Location: 1363738-1364424 bp Feature: gene Location: 1365129-1365539 bp Ori: BBF42628.1 Feature: domain Description: F1-ATPase_delta Location: 1365144-1365504 bp Feature: domain Description: F1 -ATPase_delta Location: 1 3651 44-1 365504 bp Feature: gene Location: 3050884-3051501 bp Ori: BBF44197.1 Feature: domain Description: Sortase_D_2 Location: 3051103-3051472 bp Feature: domain Description: Sortase_D_2 Location: 3051 1 03-3051 472 bp Feature: gene Location: 3051515-3052354 bp Feature: gene Location: 3052475-3054298 bp Ori: BBF44199.1 Feature: domain Description: RVT_N Location: 3052670-3052913 bp Feature: domain Description: RVT_N Location: 3052670-305291 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3052958-3053606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3052958-3053606 bp Feature: domain Description: GIIM Note: maturase Location: 3053660-3053891 bp Feature: domain Description: GIIM Note: maturase Location: 3053660-3053891 bp Feature: gene Location: 3054724-3056034 bp Ori: BBF44200.1 Feature: domain Description: COG4646 Location: 3054769-3055531 bp Feature: domain Description: COG4646 Location: 3054769-3055531 bp Feature: domain Description: HELICc Location: 3055681-3055954 bp Feature: domain Description: HELICc Location: 3055681 -3055954 bp Feature: gene Location: 3056047-3061506 bp Ori: BBF44201.1 Feature: domain Description: YtxK Location: 3059200-3059548 bp Feature: domain Description: YtxK Location: 3059200-3059548 bp Feature: domain Description: COG4646 Location: 3059605-3060346 bp Feature: domain Description: COG4646 Location: 3059605-3060346 bp Feature: domain Description: DEXDc Location: 3061159-3061471 bp Feature: domain Description: DEXDc Location: 3061 1 59-3061 471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VanZ (pfam04892), RVT-Retrons, TIR_2 (pfam13676), F1-ATPase_delta (cl29826), Sortase_D_2 (cd06166), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490)
YtxK (COG0827), DEXDc (smart00487)