myRT

myRT report for GCA_009731595.1_ASM973159v1

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Seq: AP019712.1 Staphylococcus aureus Tokyo12480 DNA, complete genome (2766239 bp)
Overview 1 RT 1: 4621-13851 bp 2 RT 2: 65910-74593 bp 3 RT 3: 295815-299544 bp 4 RT 4: 674933-680624 bp 5 RT 5: 804129-811021 bp 6 RT 6: 852321-856827 bp 7 RT 7: 1130041-1134186 bp 8 RT 8: 1917809-1921042 bp 9 RT 9: 2490731-2497033 bp Neighborhood of RT #1 [4621, 13865] gyrB PRK05560 RVT-GII GIIM Nnr2 PRK09367 Neighborhood of RT #2 [65910, 74595] M20_Acy1_YhaA-like MFS_MMR_MDR_like RVT-GII GIIM NptA COG4716 Neighborhood of RT #3 [295815, 299546] DUF5080 RVT-GII GIIM staph_tand_hypo staph_tand_hypo Neighborhood of RT #4 [674933, 680647] FepD FepD RVT-GII GIIM PRK14481 dha_L_ycgS Neighborhood of RT #5 [804129, 811026] DNA_bind_WhiA clpP RVT-GII GIIM PRK13529 YfcH Neighborhood of RT #6 [852321, 856829] RnmV TRX_family RVT-GII GIIM AbcC MetP Neighborhood of RT #7 [1130041, 1134186] efb-c CompInhib_SCIN RVT-GII GIIM Neighborhood of RT #8 [1917809, 1921044] GIIM RVT-GII Fur PGDH_1 Neighborhood of RT #9 [2490731, 2497059] FrvX YehR RVT-GII GIIM GltB2 YdiL Feature: gene Location: 4621-6552 bp Ori: BBK63574.1 Gene: gyrB Feature: domain Description: gyrB Location: 4645-6547 bp Feature: domain Description: gyrB Location: 4645-6547 bp Feature: gene Location: 6589-9258 bp Ori: BBK63575.1 Gene: gyrA Feature: domain Description: PRK05560 Location: 6607-9028 bp Feature: domain Description: PRK05560 Location: 6607-9028 bp Feature: gene Location: 9798-11093 bp Ori: BBK63576.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10023-10638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0023-1 0638 bp Feature: domain Description: GIIM Note: maturase Location: 10698-10932 bp Feature: domain Description: GIIM Note: maturase Location: 1 0698-1 0932 bp Feature: gene Location: 11213-12025 bp Ori: BBK63577.1 Gene: nnrD Feature: domain Description: Nnr2 Location: 11231-12014 bp Feature: domain Description: Nnr2 Location: 1 1 231 -1 201 4 bp Feature: gene Location: 12351-13865 bp Ori: BBK63578.1 Gene: hutH Feature: domain Description: PRK09367 Location: 12357-13851 bp Feature: domain Description: PRK09367 Location: 1 2357-1 3851 bp Feature: gene Location: 65910-67088 bp Ori: BBK63627.1 Feature: domain Description: M20_Acy1_YhaA-like Location: 65931-67065 bp Feature: domain Description: M20_Acy1 _YhaA-like Location: 65931 -67065 bp Feature: gene Location: 67090-68478 bp Ori: BBK63628.1 Feature: domain Description: MFS_MMR_MDR_like Location: 67135-68437 bp Feature: domain Description: MFS_MMR_MDR_like Location: 671 35-68437 bp Feature: gene Location: 69153-70448 bp Ori: BBK63629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69378-69993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69378-69993 bp Feature: domain Description: GIIM Note: maturase Location: 70053-70287 bp Feature: domain Description: GIIM Note: maturase Location: 70053-70287 bp Feature: gene Location: 70834-72501 bp Ori: BBK63630.1 Feature: domain Description: NptA Location: 70843-72448 bp Feature: domain Description: NptA Location: 70843-72448 bp Feature: gene Location: 72820-74595 bp Ori: BBK63631.1 Feature: domain Description: COG4716 Location: 72823-74593 bp Feature: domain Description: COG471 6 Location: 72823-74593 bp Feature: gene Location: 295815-296402 bp Ori: BBK63815.1 Feature: domain Description: DUF5080 Location: 295827-296400 bp Feature: domain Description: DUF5080 Location: 295827-296400 bp Feature: gene Location: 296579-296797 bp Feature: gene Location: 297353-298648 bp Ori: BBK63817.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297578-298193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297578-2981 93 bp Feature: domain Description: GIIM Note: maturase Location: 298253-298487 bp Feature: domain Description: GIIM Note: maturase Location: 298253-298487 bp Feature: gene Location: 298799-299299 bp Ori: BBK63818.1 Feature: domain Description: staph_tand_hypo Location: 298802-299270 bp Feature: domain Description: staph_tand_hypo Location: 298802-299270 bp Feature: gene Location: 299310-299546 bp Ori: BBK63819.1 Feature: domain Description: staph_tand_hypo Location: 299313-299544 bp Feature: domain Description: staph_tand_hypo Location: 29931 3-299544 bp Feature: gene Location: 674933-675937 bp Ori: BBK64167.1 Feature: domain Description: FepD Location: 674975-675929 bp Feature: domain Description: FepD Location: 674975-675929 bp Feature: gene Location: 675934-676950 bp Ori: BBK64168.1 Feature: domain Description: FepD Location: 675967-676945 bp Feature: domain Description: FepD Location: 675967-676945 bp Feature: gene Location: 677515-678810 bp Ori: BBK64169.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677740-678355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 677740-678355 bp Feature: domain Description: GIIM Note: maturase Location: 678415-678649 bp Feature: domain Description: GIIM Note: maturase Location: 67841 5-678649 bp Feature: gene Location: 679053-680021 bp Ori: BBK64170.1 Feature: domain Description: PRK14481 Location: 679059-680019 bp Feature: domain Description: PRK1 4481 Location: 679059-68001 9 bp Feature: gene Location: 680063-680647 bp Ori: BBK64171.1 Feature: domain Description: dha_L_ycgS Location: 680090-680624 bp Feature: domain Description: dha_L_ycgS Location: 680090-680624 bp Feature: gene Location: 804129-805073 bp Ori: BBK64290.1 Gene: whiA Feature: domain Description: DNA_bind_WhiA Location: 804141-805041 bp Feature: domain Description: DNA_bind_WhiA Location: 8041 41 -805041 bp Feature: gene Location: 805643-806230 bp Ori: BBK64291.1 Gene: clpP_1 Feature: domain Description: clpP Location: 805646-806213 bp Feature: domain Description: clpP Location: 805646-80621 3 bp Feature: gene Location: 806771-808066 bp Ori: BBK64292.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806996-807611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806996-80761 1 bp Feature: domain Description: GIIM Note: maturase Location: 807671-807905 bp Feature: domain Description: GIIM Note: maturase Location: 807671 -807905 bp Feature: gene Location: 808283-809917 bp Ori: BBK64293.1 Gene: sfcA Feature: domain Description: PRK13529 Location: 808289-809912 bp Feature: domain Description: PRK1 3529 Location: 808289-80991 2 bp Feature: gene Location: 810124-811026 bp Ori: BBK64294.1 Feature: domain Description: YfcH Location: 810139-811021 bp Feature: domain Description: YfcH Location: 81 01 39-81 1 021 bp Feature: gene Location: 852321-852707 bp Ori: BBK64339.1 Feature: domain Description: RnmV Location: 852327-852672 bp Feature: domain Description: RnmV Location: 852327-852672 bp Feature: gene Location: 852700-852996 bp Ori: BBK64340.1 Feature: domain Description: TRX_family Location: 852751-852991 bp Feature: domain Description: TRX_family Location: 852751 -852991 bp Feature: gene Location: 853714-855009 bp Ori: BBK64341.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 853939-854554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 853939-854554 bp Feature: domain Description: GIIM Note: maturase Location: 854614-854848 bp Feature: domain Description: GIIM Note: maturase Location: 85461 4-854848 bp Feature: gene Location: 855116-856141 bp Ori: BBK64342.1 Gene: metN2 Feature: domain Description: AbcC Location: 855119-856133 bp Feature: domain Description: AbcC Location: 8551 1 9-8561 33 bp Feature: gene Location: 856134-856829 bp Ori: BBK64343.1 Feature: domain Description: MetP Location: 856170-856827 bp Feature: domain Description: MetP Location: 8561 70-856827 bp Feature: gene Location: 1130041-1130538 bp Ori: BBK64609.1 Feature: domain Description: efb-c Location: 1130344-1130536 bp Feature: domain Description: efb-c Location: 1 1 30344-1 1 30536 bp Feature: gene Location: 1130690-1131040 bp Ori: BBK64610.1 Feature: domain Description: CompInhib_SCIN Location: 1130693-1131038 bp Feature: domain Description: CompInhib_SCIN Location: 1 1 30693-1 1 31 038 bp Feature: gene Location: 1131587-1132882 bp Ori: BBK64611.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1131812-1132427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 31 81 2-1 1 32427 bp Feature: domain Description: GIIM Note: maturase Location: 1132487-1132721 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 32487-1 1 32721 bp Feature: gene Location: 1132993-1133217 bp Feature: gene Location: 1133953-1134186 bp Feature: gene Location: 1917809-1918204 bp Ori: BBK65322.1 Feature: domain Description: GIIM Note: maturase Location: 1917968-1918175 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 7968-1 91 81 75 bp Feature: gene Location: 1918261-1918944 bp Ori: BBK65323.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1918486-1918924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 8486-1 91 8924 bp Feature: gene Location: 1919551-1919997 bp Ori: BBK65324.1 Gene: perR Feature: domain Description: Fur Location: 1919584-1919992 bp Feature: domain Description: Fur Location: 1 91 9584-1 91 9992 bp Feature: gene Location: 1920094-1921044 bp Ori: BBK65325.1 Feature: domain Description: PGDH_1 Location: 1920100-1921042 bp Feature: domain Description: PGDH_1 Location: 1 9201 00-1 921 042 bp Feature: gene Location: 2490731-2491807 bp Ori: BBK65891.1 Feature: domain Description: FrvX Location: 2490734-2491799 bp Feature: domain Description: FrvX Location: 2490734-2491 799 bp Feature: gene Location: 2492045-2492500 bp Ori: BBK65892.1 Feature: domain Description: YehR Location: 2492051-2492483 bp Feature: domain Description: YehR Location: 2492051 -2492483 bp Feature: gene Location: 2492586-2493881 bp Ori: BBK65893.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2492811-2493426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249281 1 -2493426 bp Feature: domain Description: GIIM Note: maturase Location: 2493486-2493720 bp Feature: domain Description: GIIM Note: maturase Location: 2493486-2493720 bp Feature: gene Location: 2494538-2496115 bp Ori: BBK65894.1 Feature: domain Description: GltB2 Location: 2494565-2496068 bp Feature: domain Description: GltB2 Location: 2494565-2496068 bp Feature: gene Location: 2496310-2497059 bp Ori: BBK65895.1 Feature: domain Description: YdiL Location: 2496397-2497033 bp Feature: domain Description: YdiL Location: 2496397-2497033 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gyrB (TIGR01059), PRK05560 (DNA gyrase subunit A; Validated), RVT-GII, GIIM (pfam08388), Nnr2 (COG0063), PRK09367 (histidine ammonia-lyase; Provisional), M20_Acy1_YhaA-like (cd08021), MFS_MMR_MDR_like (cd17504), NptA (COG1283), COG4716 (Myosin-crossreactive antigen (function unknown) )
DUF5080 (pfam16883), staph_tand_hypo (TIGR01741), FepD (COG0609), PRK14481 (dihydroxyacetone kinase subunit DhaK; Provisional), dha_L_ycgS (TIGR02365), DNA_bind_WhiA (TIGR00647), clpP, PRK13529 (oxaloacetate-decarboxylating malate dehydrogenase), YfcH (COG1090), RnmV (COG1658)
TRX_family (cd02947), AbcC (COG1135), MetP (COG2011), efb-c (pfam12199), CompInhib_SCIN (pfam11546), Fur (COG0735), PGDH_1 (cd12155), FrvX (COG1363), YehR (COG4808), GltB2 (COG0069)
YdiL (COG1266)