myRT

myRT report for GCA_009734005.2_ASM973400v2

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Seq: CP038996.1 Enterococcus faecium strain SRR24 chromosome, complete genome (2796178 bp)
Overview 1 RT 1: 445438-451188 bp 2 RT 2: 2668841-2673645 bp Neighborhood of RT #1 [445438, 451211] PolY_Pol_V_umuC RVT-GII PRK05322 Neighborhood of RT #2 [2668841, 2673659] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Feature: gene Location: 445438-445824 bp Feature: gene Location: 445796-447169 bp Ori: QHU86641.1 Feature: domain Description: PolY_Pol_V_umuC Location: 445877-446921 bp Feature: domain Description: PolY_Pol_V_umuC Location: 445877-446921 bp Feature: gene Location: 447209-449071 bp Ori: QHU86642.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447518-448256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44751 8-448256 bp Feature: gene Location: 449785-449958 bp Feature: gene Location: 450024-451211 bp Ori: QHU86643.1 Feature: domain Description: PRK05322 Location: 450036-451188 bp Feature: domain Description: PRK05322 Location: 450036-451 1 88 bp Feature: gene Location: 2668841-2670025 bp Ori: QHU88713.1 Feature: domain Description: HTH_XRE Location: 2668871-2669015 bp Feature: domain Description: HTH_XRE Location: 2668871 -266901 5 bp Feature: domain Description: Rol_Rep_N Location: 2669048-2669312 bp Feature: domain Description: Rol_Rep_N Location: 2669048-266931 2 bp Feature: domain Description: Rep_trans Location: 2669336-2669948 bp Feature: domain Description: Rep_trans Location: 2669336-2669948 bp Feature: gene Location: 2670022-2670159 bp Ori: QHU88714.1 Feature: domain Description: DUF3789 Location: 2670049-2670142 bp Feature: domain Description: DUF3789 Location: 2670049-26701 42 bp Feature: gene Location: 2670905-2672815 bp Ori: QHU88715.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2671238-2671976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2671 238-2671 976 bp Feature: domain Description: HNHc Note: nucleases Location: 2672531-2672696 bp Feature: domain Description: HNHc Note: nucleases Location: 2672531 -2672696 bp Feature: gene Location: 2672919-2673143 bp Feature: gene Location: 2673156-2673659 bp Ori: QHU88716.1 Feature: domain Description: ArdA Location: 2673174-2673645 bp Feature: domain Description: ArdA Location: 26731 74-2673645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT-GII, PRK05322 (galactokinase; Provisional), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), HNHc (smart00507), ArdA (pfam07275)

Seq: CP038997.1 Enterococcus faecium strain SRR24 plasmid pSRR24 (123020 bp)
Overview 1 RT 1: 4969-11811 bp Neighborhood of RT #1 [4969, 11811] PolY_Pol_V_umuC RVT-GII Feature: gene Location: 4969-5316 bp Feature: gene Location: 5309-6604 bp Ori: QHU89024.1 Feature: domain Description: PolY_Pol_V_umuC Location: 5348-6383 bp Feature: domain Description: PolY_Pol_V_umuC Location: 5348-6383 bp Feature: gene Location: 6686-8548 bp Ori: QHU88905.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6995-7733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6995-7733 bp Feature: gene Location: 10251-11477 bp Feature: gene Location: 11611-11811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT-GII