myRT

myRT report for GCA_009734285.1_ASM973428v1

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Seq: CP046441.1 Pseudomonas coronafaciens pv. coronafaciens strain B19001 chromosome, complete genome (5835409 bp)
Overview 1 RT 1: 3836553-3844449 bp 2 RT 2: 4983212-4987996 bp Neighborhood of RT #1 [3836553, 3844499] COG3666 RVT-UG9 PRK14975 HNHc DnaJ_CXXCXGXG DnaJ_CXXCXGXG DnaJ_CXXCXGXG DnaJ_CXXCXGXG Neighborhood of RT #2 [4983212, 4988025] AlpA HTH_Tnp_1 HTH_Tnp_1 rve RVT-GII InsE TnpB_IS66 Feature: gene Location: 3836553-3836885 bp Feature: gene Location: 3837157-3838528 bp Feature: domain Description: COG3666 Location: 3837199-3837643 bp Feature: domain Description: COG3666 Location: 38371 99-3837643 bp Feature: gene Location: 3838948-3840789 bp Ori: QGT82811.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3839359-3839998 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3839359-3839998 bp Feature: gene Location: 3841343-3842341 bp Ori: QGT84696.1 Feature: domain Description: PRK14975 Location: 3841502-3842264 bp Feature: domain Description: PRK1 4975 Location: 3841 502-3842264 bp Feature: gene Location: 3842805-3844499 bp Ori: QGT82812.1 Feature: domain Description: HNHc Note: nucleases Location: 3843039-3843186 bp Feature: domain Description: HNHc Note: nucleases Location: 3843039-38431 86 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 3843522-3843711 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 3843522-384371 1 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 3843771-3843957 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 3843771 -3843957 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 3844017-3844203 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 384401 7-3844203 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 3844263-3844449 bp Feature: domain Description: DnaJ_CXXCXGXG Location: 3844263-3844449 bp Feature: gene Location: 4983212-4983442 bp Ori: QGT83789.1 Feature: domain Description: AlpA Location: 4983233-4983422 bp Feature: domain Description: AlpA Location: 4983233-4983422 bp Feature: gene Location: 4983728-4985265 bp Feature: domain Description: HTH_Tnp_1 Location: 4983740-4983905 bp Feature: domain Description: HTH_Tnp_1 Location: 4983740-4983905 bp Feature: domain Description: HTH_Tnp_1 Location: 4983911-4984136 bp Feature: domain Description: HTH_Tnp_1 Location: 498391 1 -49841 36 bp Feature: domain Description: rve Location: 4984625-4984961 bp Feature: domain Description: rve Location: 4984625-4984961 bp Feature: gene Location: 4985416-4987212 bp Ori: QGT83790.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4986130-4986820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49861 30-4986820 bp Feature: gene Location: 4987370-4987693 bp Ori: QGT84748.1 Feature: domain Description: InsE Location: 4987385-4987541 bp Feature: domain Description: InsE Location: 4987385-4987541 bp Feature: gene Location: 4987690-4988025 bp Ori: QGT83791.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 4987708-4987996 bp Feature: domain Description: TnpB_IS66 Location: 4987708-4987996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), HNHc (smart00507), DnaJ_CXXCXGXG (pfam00684), AlpA (COG3311), HTH_Tnp_1 (pfam01527), rve (pfam00665), RVT-GII, InsE (COG2963)
TnpB_IS66 (pfam05717)

Seq: CP046443.1 Pseudomonas coronafaciens pv. coronafaciens strain B19001 plasmid unnamed2, complete sequence (45971 bp)
Overview 1 RT 1: 9029-12980 bp Neighborhood of RT #1 [9029, 12980] TnpB_IS66 InsE RVT-GII Feature: gene Location: 9029-9364 bp Ori: QGT84917.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 9047-9335 bp Feature: domain Description: TnpB_IS66 Location: 9047-9335 bp Feature: gene Location: 9361-9729 bp Ori: QGT84918.1 Feature: domain Description: InsE Location: 9412-9565 bp Feature: domain Description: InsE Location: 9412 -9565 bp Feature: gene Location: 9852-11648 bp Ori: QGT84919.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10566-11256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10566-112 56 bp Feature: gene Location: 11828-12433 bp Feature: gene Location: 12789-12980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), InsE (COG2963), RVT-GII

Seq: CP046442.1 Pseudomonas coronafaciens pv. coronafaciens strain B19001 plasmid unnamed1, complete sequence (112911 bp)
Overview 1 RT 1: 3859-8890 bp Neighborhood of RT #1 [3859, 8890] COG0645 RVT-GII Feature: gene Location: 3859-4740 bp Feature: gene Location: 4884-5390 bp Ori: QGT84793.1 Feature: domain Description: COG0645 Location: 4887-5238 bp Feature: domain Description: COG0645 Location: 4887-523 8 bp Feature: gene Location: 5613-7409 bp Ori: QGT84794.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6327-7017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 27-7017 bp Feature: gene Location: 7611-8456 bp Feature: gene Location: 8645-8890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0645 (Predicted kinase ), RVT-GII