myRT

myRT report for GCA_009739945.1_ASM973994v1

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Seq: CP040336.1 Bacillus luti strain FJ chromosome, complete genome (5202942 bp)
Overview 1 RT 1: 1711913-1724256 bp 2 RT 2: 2034955-2039816 bp 3 RT 3: 2170276-2177306 bp 4 RT 4: 2832414-2836675 bp 5 RT 5: 4055768-4062589 bp 6 RT 6: 4137889-4144553 bp Neighborhood of RT #1 [1711913, 1724256] CcdC B_ant_repeat B_ant_repeat B_ant_repeat RVT-GII HNHc B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat Neighborhood of RT #2 [2034955, 2040061] YbaK_EbsC SpoIIM RVT_N RVT-GII GIIM HTH_3 ANAPC3 ANAPC3 Neighborhood of RT #3 [2170276, 2177306] AcrR TetR_C_17 MupV_like_SDR_e PRK14875 RVT_N RVT-GII GIIM YdiL Neighborhood of RT #4 [2832414, 2836675] HTH_MARR YktD RVT_N RVT-GII GIIM Neighborhood of RT #5 [4055768, 4062651] prsA RVT_N RVT-GII GIIM HelD Neighborhood of RT #6 [4137889, 4145065] LtrA RVT_N RVT-GII GIIM DUF1453 KOG3544 Feature: gene Location: 1711913-1712419 bp Feature: domain Description: CcdC Location: 1711922-1712384 bp Feature: domain Description: CcdC Location: 1 71 1 922-1 71 2384 bp Feature: gene Location: 1712487-1713767 bp Feature: domain Description: B_ant_repeat Location: 1712565-1712676 bp Feature: domain Description: B_ant_repeat Location: 1 71 2565-1 71 2676 bp Feature: domain Description: B_ant_repeat Location: 1712916-1713072 bp Feature: domain Description: B_ant_repeat Location: 1 71 291 6-1 71 3072 bp Feature: domain Description: B_ant_repeat Location: 1713315-1713471 bp Feature: domain Description: B_ant_repeat Location: 1 71 331 5-1 71 3471 bp Feature: gene Location: 1714469-1716397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1714790-1715525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 4790-1 71 5525 bp Feature: domain Description: HNHc Note: nucleases Location: 1716116-1716281 bp Feature: domain Description: HNHc Note: nucleases Location: 1 71 61 1 6-1 71 6281 bp Feature: gene Location: 1716566-1722931 bp Feature: domain Description: B_ant_repeat Location: 1716575-1716710 bp Feature: domain Description: B_ant_repeat Location: 1 71 6575-1 71 671 0 bp Feature: domain Description: B_ant_repeat Location: 1716950-1717103 bp Feature: domain Description: B_ant_repeat Location: 1 71 6950-1 71 71 03 bp Feature: domain Description: B_ant_repeat Location: 1717340-1717493 bp Feature: domain Description: B_ant_repeat Location: 1 71 7340-1 71 7493 bp Feature: domain Description: B_ant_repeat Location: 1717733-1717889 bp Feature: domain Description: B_ant_repeat Location: 1 71 7733-1 71 7889 bp Feature: domain Description: B_ant_repeat Location: 1718129-1718282 bp Feature: domain Description: B_ant_repeat Location: 1 71 81 29-1 71 8282 bp Feature: domain Description: B_ant_repeat Location: 1718525-1718681 bp Feature: domain Description: B_ant_repeat Location: 1 71 8525-1 71 8681 bp Feature: domain Description: B_ant_repeat Location: 1718921-1719077 bp Feature: domain Description: B_ant_repeat Location: 1 71 8921 -1 71 9077 bp Feature: domain Description: B_ant_repeat Location: 1719317-1719470 bp Feature: domain Description: B_ant_repeat Location: 1 71 931 7-1 71 9470 bp Feature: domain Description: B_ant_repeat Location: 1719713-1719869 bp Feature: domain Description: B_ant_repeat Location: 1 71 971 3-1 71 9869 bp Feature: domain Description: B_ant_repeat Location: 1720109-1720265 bp Feature: domain Description: B_ant_repeat Location: 1 7201 09-1 720265 bp Feature: domain Description: B_ant_repeat Location: 1720505-1720661 bp Feature: domain Description: B_ant_repeat Location: 1 720505-1 720661 bp Feature: domain Description: B_ant_repeat Location: 1720901-1721057 bp Feature: domain Description: B_ant_repeat Location: 1 720901 -1 721 057 bp Feature: domain Description: B_ant_repeat Location: 1721297-1721453 bp Feature: domain Description: B_ant_repeat Location: 1 721 297-1 721 453 bp Feature: domain Description: B_ant_repeat Location: 1721693-1721849 bp Feature: domain Description: B_ant_repeat Location: 1 721 693-1 721 849 bp Feature: domain Description: B_ant_repeat Location: 1722089-1722242 bp Feature: domain Description: B_ant_repeat Location: 1 722089-1 722242 bp Feature: domain Description: B_ant_repeat Location: 1722485-1722641 bp Feature: domain Description: B_ant_repeat Location: 1 722485-1 722641 bp Feature: gene Location: 1723201-1724256 bp Feature: gene Location: 2034955-2035431 bp Feature: domain Description: YbaK_EbsC Location: 2034973-2035423 bp Feature: domain Description: YbaK_EbsC Location: 2034973-2035423 bp Feature: gene Location: 2035629-2036243 bp Feature: domain Description: SpoIIM Location: 2035686-2036217 bp Feature: domain Description: SpoIIM Location: 2035686-203621 7 bp Feature: gene Location: 2036934-2038346 bp Feature: domain Description: RVT_N Location: 2036976-2037213 bp Feature: domain Description: RVT_N Location: 2036976-203721 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2037267-2037927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2037267-2037927 bp Feature: domain Description: GIIM Note: maturase Location: 2037996-2038227 bp Feature: domain Description: GIIM Note: maturase Location: 2037996-2038227 bp Feature: gene Location: 2038363-2038581 bp Feature: gene Location: 2038940-2040061 bp Feature: domain Description: HTH_3 Location: 2038970-2039132 bp Feature: domain Description: HTH_3 Location: 2038970-20391 32 bp Feature: domain Description: ANAPC3 Location: 2039348-2039498 bp Feature: domain Description: ANAPC3 Location: 2039348-2039498 bp Feature: domain Description: ANAPC3 Location: 2039714-2039816 bp Feature: domain Description: ANAPC3 Location: 203971 4-203981 6 bp Feature: gene Location: 2170276-2170860 bp Feature: domain Description: AcrR Location: 2170303-2170567 bp Feature: domain Description: AcrR Location: 21 70303-21 70567 bp Feature: domain Description: TetR_C_17 Location: 2170639-2170789 bp Feature: domain Description: TetR_C_1 7 Location: 21 70639-21 70789 bp Feature: gene Location: 2170919-2172775 bp Feature: domain Description: MupV_like_SDR_e Location: 2170931-2171807 bp Feature: domain Description: MupV_like_SDR_e Location: 21 70931 -21 71 807 bp Feature: domain Description: PRK14875 Location: 2172035-2172359 bp Feature: domain Description: PRK1 4875 Location: 21 72035-21 72359 bp Feature: gene Location: 2173150-2174796 bp Feature: domain Description: RVT_N Location: 2173192-2173429 bp Feature: domain Description: RVT_N Location: 21 731 92-21 73429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2173483-2174143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 73483-21 741 43 bp Feature: domain Description: GIIM Note: maturase Location: 2174212-2174443 bp Feature: domain Description: GIIM Note: maturase Location: 21 7421 2-21 74443 bp Feature: gene Location: 2175817-2176617 bp Feature: domain Description: YdiL Location: 2175850-2176525 bp Feature: domain Description: YdiL Location: 21 75850-21 76525 bp Feature: gene Location: 2176953-2177306 bp Feature: gene Location: 2832414-2832884 bp Feature: domain Description: HTH_MARR Location: 2832531-2832819 bp Feature: domain Description: HTH_MARR Location: 2832531 -283281 9 bp Feature: gene Location: 2832918-2833739 bp Feature: domain Description: YktD Location: 2832939-2833560 bp Feature: domain Description: YktD Location: 2832939-2833560 bp Feature: gene Location: 2834113-2835759 bp Feature: domain Description: RVT_N Location: 2834155-2834392 bp Feature: domain Description: RVT_N Location: 28341 55-2834392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2834446-2835106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2834446-28351 06 bp Feature: domain Description: GIIM Note: maturase Location: 2835175-2835406 bp Feature: domain Description: GIIM Note: maturase Location: 28351 75-2835406 bp Feature: gene Location: 2836259-2836438 bp Feature: gene Location: 2836478-2836675 bp Feature: gene Location: 4055768-4055962 bp Feature: gene Location: 4056387-4057253 bp Feature: domain Description: prsA Location: 4056390-4057251 bp Feature: domain Description: prsA Location: 4056390-4057251 bp Feature: gene Location: 4057499-4059145 bp Feature: domain Description: RVT_N Location: 4057541-4057778 bp Feature: domain Description: RVT_N Location: 4057541 -4057778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4057832-4058492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4057832-4058492 bp Feature: domain Description: GIIM Note: maturase Location: 4058561-4058792 bp Feature: domain Description: GIIM Note: maturase Location: 4058561 -4058792 bp Feature: gene Location: 4059795-4060040 bp Feature: gene Location: 4060321-4062651 bp Feature: domain Description: HelD Location: 4060345-4062589 bp Feature: domain Description: HelD Location: 4060345-4062589 bp Feature: gene Location: 4137889-4138980 bp Feature: domain Description: LtrA Location: 4137892-4138957 bp Feature: domain Description: LtrA Location: 41 37892-41 38957 bp Feature: gene Location: 4139415-4139954 bp Feature: gene Location: 4140308-4141954 bp Feature: domain Description: RVT_N Location: 4140350-4140587 bp Feature: domain Description: RVT_N Location: 41 40350-41 40587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4140641-4141301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 40641 -41 41 301 bp Feature: domain Description: GIIM Note: maturase Location: 4141370-4141601 bp Feature: domain Description: GIIM Note: maturase Location: 41 41 370-41 41 601 bp Feature: gene Location: 4142730-4143248 bp Feature: domain Description: DUF1453 Location: 4142793-4143219 bp Feature: domain Description: DUF1 453 Location: 41 42793-41 4321 9 bp Feature: gene Location: 4144133-4145065 bp Feature: domain Description: KOG3544 Location: 4144178-4144553 bp Feature: domain Description: KOG3544 Location: 41 441 78-41 44553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcdC (COG4846), B_ant_repeat (TIGR01451), RVT-GII, HNHc (smart00507), YbaK_EbsC (TIGR00011), SpoIIM (pfam01944), RVT_N (pfam13655), GIIM (pfam08388), HTH_3 (pfam01381), ANAPC3 (pfam12895)
AcrR (COG1309), TetR_C_17 (pfam17922), MupV_like_SDR_e (cd05263), PRK14875 (acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional), YdiL (COG1266), HTH_MARR (smart00347), YktD (COG3315), prsA (PRK04405), HelD (COG3973), LtrA (pfam06772)
DUF1453 (pfam07301), KOG3544 (KOG3544, Collagens (type IV and type XIII), and related proteins )

Seq: CP040339.1 Bacillus luti strain FJ plasmid unnamed3, complete sequence (51945 bp)
Overview 1 RT 1: 4284-10468 bp Neighborhood of RT #1 [4284, 10575] MORN MORN MORN MORN MORN MORN MORN CSD RVT_N RVT-GII GIIM Replic_Relax Feature: gene Location: 4284-4763 bp Feature: gene Location: 4921-6345 bp Feature: domain Description: MORN Location: 5215-5263 bp Feature: domain Description: MORN Location: 52 15-52 63 bp Feature: domain Description: MORN Location: 5320-5371 bp Feature: domain Description: MORN Location: 532 0-5371 bp Feature: domain Description: MORN Location: 5389-5434 bp Feature: domain Description: MORN Location: 5389-5434 bp Feature: domain Description: MORN Location: 5458-5500 bp Feature: domain Description: MORN Location: 5458-5500 bp Feature: domain Description: MORN Location: 5737-5785 bp Feature: domain Description: MORN Location: 5737-5785 bp Feature: domain Description: MORN Location: 5878-5923 bp Feature: domain Description: MORN Location: 5878-592 3 bp Feature: domain Description: MORN Location: 5953-5992 bp Feature: domain Description: MORN Location: 5953-5992 bp Feature: domain Description: CSD Location: 6121-6310 bp Feature: domain Description: CSD Location: 612 1-6310 bp Feature: gene Location: 7023-8669 bp Feature: domain Description: RVT_N Location: 7065-7302 bp Feature: domain Description: RVT_N Location: 7065-7302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7356-8016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7356-8016 bp Feature: domain Description: GIIM Note: maturase Location: 8085-8316 bp Feature: domain Description: GIIM Note: maturase Location: 8085-8316 bp Feature: gene Location: 9477-9965 bp Feature: gene Location: 9985-10575 bp Feature: domain Description: Replic_Relax Location: 10033-10468 bp Feature: domain Description: Replic_Relax Location: 10033-10468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MORN (smart00698), CSD (pfam00313), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Replic_Relax (pfam13814)