myRT

myRT report for GCA_009761715.1_ASM976171v1

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Seq: CP041032.1 Escherichia coli strain PT109 plasmid pLB_CTX-M-15_PT109, complete sequence (126409 bp)
Overview 1 RT 1: 37600-41602 bp Neighborhood of RT #1 [37600, 41655] InsE RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 37600-38339 bp Feature: domain Description: InsE Location: 37603-37939 bp Feature: domain Description: InsE Location: 37603-37939 bp Feature: gene Location: 38332-38703 bp Feature: gene Location: 39012-40520 bp Ori: QGX86058.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39270-40002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39270-40002 bp Feature: domain Description: GIIM Note: maturase Location: 40077-40275 bp Feature: domain Description: GIIM Note: maturase Location: 40077-40275 bp Feature: gene Location: 40610-41083 bp Feature: domain Description: PHA02517 Location: 40616-41081 bp Feature: domain Description: PHA0251 7 Location: 4061 6-41 081 bp Feature: gene Location: 41086-41655 bp Ori: QGX85987.1 Feature: domain Description: autotrans_barl Location: 41167-41602 bp Feature: domain Description: autotrans_barl Location: 41 1 67-41 602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), autotrans_barl (TIGR01414)

Seq: CP041031.1 Escherichia coli strain PT109 chromosome, complete genome (4816454 bp)
Overview 1 RT 1: 92455-96335 bp 2 RT 2: 4028661-4033709 bp Neighborhood of RT #1 [92455, 96340] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [4028661, 4033720] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Feature: gene Location: 92455-93171 bp Ori: QGX81682.1 Feature: domain Description: rph Location: 92458-93166 bp Feature: domain Description: rph Location: 92 458-93166 bp Feature: gene Location: 93238-93879 bp Ori: QGX81683.1 Gene: pyrE Feature: domain Description: pyrE Location: 93241-93874 bp Feature: domain Description: pyrE Location: 932 41-93874 bp Feature: gene Location: 94177-95136 bp Ori: QGX81684.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94312-94861 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94312 -94861 bp Feature: gene Location: 95182-95778 bp Ori: QGX81685.1 Gene: slmA Feature: domain Description: slmA Location: 95188-95764 bp Feature: domain Description: slmA Location: 95188-95764 bp Feature: gene Location: 95885-96340 bp Ori: QGX85759.1 Feature: domain Description: dut Location: 95888-96335 bp Feature: domain Description: dut Location: 95888-96335 bp Feature: gene Location: 4028661-4030247 bp Ori: QGX85084.1 Gene: prfC Feature: domain Description: prfC Location: 4028679-4030245 bp Feature: domain Description: prfC Location: 402 8679-40302 45 bp Feature: gene Location: 4030467-4030727 bp Ori: QGX85085.1 Feature: domain Description: PRK10597 Location: 4030470-4030710 bp Feature: domain Description: PRK10597 Location: 4030470-4030710 bp Feature: gene Location: 4031087-4032691 bp Ori: QGX85927.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4031378-4031969 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4031378-4031969 bp Feature: domain Description: TIR_2 Location: 4032296-4032584 bp Feature: domain Description: TIR_2 Location: 4032 2 96-4032 584 bp Feature: gene Location: 4032875-4033149 bp Feature: gene Location: 4033136-4033720 bp Ori: QGX85086.1 Feature: domain Description: Caudo_TAP Location: 4033352-4033709 bp Feature: domain Description: Caudo_TAP Location: 4033352 -4033709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), TIR_2 (pfam13676), Caudo_TAP (pfam02413)