myRT

myRT report for GCA_009763125.1_ASM976312v1

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Seq: CP046752.1 Photobacterium damselae strain 9046-81 chromosome 1, complete sequence (3222124 bp)
Overview 1 RT 1: 1805652-1812952 bp 2 RT 2: 2146272-2153423 bp 3 RT 3: 2875889-2881309 bp Neighborhood of RT #1 [1805652, 1812996] PRK11570 OapA RVT-GII GIIM cpdB cysG Neighborhood of RT #2 [2146272, 2153536] RVT-UG5 COG4643 COG3378 Neighborhood of RT #3 [2875889, 2881329] PGAP1 LMWP_ArsC PRK10141 RVT-GII GIIM PRK08955 CDKN3-like Feature: gene Location: 1805652-1806281 bp Feature: domain Description: PRK11570 Location: 1805673-1806279 bp Feature: domain Description: PRK1 1 570 Location: 1 805673-1 806279 bp Feature: gene Location: 1806395-1807237 bp Feature: domain Description: OapA Location: 1806944-1807235 bp Feature: domain Description: OapA Location: 1 806944-1 807235 bp Feature: gene Location: 1807834-1809147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1808053-1808668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 808053-1 808668 bp Feature: domain Description: GIIM Note: maturase Location: 1808719-1808920 bp Feature: domain Description: GIIM Note: maturase Location: 1 80871 9-1 808920 bp Feature: gene Location: 1809219-1811210 bp Feature: domain Description: cpdB Location: 1809267-1811199 bp Feature: domain Description: cpdB Location: 1 809267-1 81 1 1 99 bp Feature: gene Location: 1811587-1812996 bp Feature: domain Description: cysG Location: 1811590-1812952 bp Feature: domain Description: cysG Location: 1 81 1 590-1 81 2952 bp Feature: gene Location: 2146272-2146745 bp Feature: gene Location: 2146862-2147032 bp Feature: gene Location: 2147062-2150274 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2147590-2148121 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 21 47590-21 481 21 bp Feature: gene Location: 2150278-2150766 bp Feature: gene Location: 2151050-2153536 bp Feature: domain Description: COG4643 Location: 2151077-2152091 bp Feature: domain Description: COG4643 Location: 21 51 077-21 52091 bp Feature: domain Description: COG3378 Location: 2152619-2153423 bp Feature: domain Description: COG3378 Location: 21 5261 9-21 53423 bp Feature: gene Location: 2875889-2876875 bp Feature: domain Description: PGAP1 Location: 2876069-2876549 bp Feature: domain Description: PGAP1 Location: 2876069-2876549 bp Feature: gene Location: 2876927-2877685 bp Feature: domain Description: LMWP_ArsC Location: 2876942-2877323 bp Feature: domain Description: LMWP_ArsC Location: 2876942-2877323 bp Feature: domain Description: PRK10141 Location: 2877356-2877635 bp Feature: domain Description: PRK1 01 41 Location: 2877356-2877635 bp Feature: gene Location: 2878289-2879602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2878508-2879123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2878508-28791 23 bp Feature: domain Description: GIIM Note: maturase Location: 2879174-2879375 bp Feature: domain Description: GIIM Note: maturase Location: 28791 74-2879375 bp Feature: gene Location: 2879731-2880765 bp Feature: domain Description: PRK08955 Location: 2879755-2880754 bp Feature: domain Description: PRK08955 Location: 2879755-2880754 bp Feature: gene Location: 2880826-2881329 bp Feature: domain Description: CDKN3-like Location: 2880844-2881309 bp Feature: domain Description: CDKN3-like Location: 2880844-2881 309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11570 (peptidyl-prolyl cis-trans isomerase; Provisional), OapA (pfam04225), RVT-GII, GIIM (pfam08388), cpdB (PRK09420), cysG (PRK10637), RVT-UG5, COG4643 (Uncharacterized domain associated with phage/plasmid primase ), COG3378 (Phage- or plasmid-associated DNA primase ), PGAP1 (pfam07819)
LMWP_ArsC (cd16345), PRK10141 (DNA-binding transcriptional repressor ArsR; Provisional), PRK08955 (glyceraldehyde-3-phosphate dehydrogenase; Validated), CDKN3-like (cd14505)

Seq: CP046751.1 Photobacterium damselae strain 9046-81 chromosome 2, complete sequence (1230339 bp)
Overview 1 RT 1: 1013159-1020318 bp 2 RT 2: 1115542-1119828 bp Neighborhood of RT #1 [1013159, 1020944] RVT-GII GIIM HTH_3 HTH_XRE HTH_XRE Neighborhood of RT #2 [1115542, 1119908] NlpE RVT-GII GS_GGDEF_1 GGDEF Feature: gene Location: 1013159-1014178 bp Feature: gene Location: 1014331-1016508 bp Feature: gene Location: 1017093-1018406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1017312-1017927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1017312 -101792 7 bp Feature: domain Description: GIIM Note: maturase Location: 1017978-1018179 bp Feature: domain Description: GIIM Note: maturase Location: 1017978-1018179 bp Feature: gene Location: 1019169-1020089 bp Feature: domain Description: HTH_3 Location: 1019286-1019370 bp Feature: domain Description: HTH_3 Location: 10192 86-1019370 bp Feature: gene Location: 1020162-1020944 bp Feature: domain Description: HTH_XRE Location: 1020174-1020234 bp Feature: domain Description: HTH_XRE Location: 102 0174-102 02 34 bp Feature: domain Description: HTH_XRE Location: 1020267-1020318 bp Feature: domain Description: HTH_XRE Location: 102 02 67-102 0318 bp Feature: gene Location: 1115542-1116024 bp Feature: domain Description: NlpE Location: 1115731-1115983 bp Feature: domain Description: NlpE Location: 1115731-1115983 bp Feature: gene Location: 1116139-1117446 bp Feature: gene Location: 1117855-1118037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1117864-1118005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1117864-1118005 bp Feature: gene Location: 1118591-1118731 bp Feature: gene Location: 1118772-1119908 bp Feature: domain Description: GS_GGDEF_1 Location: 1118835-1119276 bp Feature: domain Description: GS_GGDEF_1 Location: 1118835-11192 76 bp Feature: domain Description: GGDEF Location: 1119393-1119828 bp Feature: domain Description: GGDEF Location: 1119393-111982 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_3 (pfam01381), HTH_XRE (smart00530), NlpE (pfam04170), GS_GGDEF_1 (cd14758), GGDEF (TIGR00254)