myRT

myRT report for GCA_009763485.1_ASM976348v1

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Seq: CP046816.1 Vibrio cincinnatiensis strain 1398-82 chromosome 2, complete sequence (1010325 bp)
Overview 1 RT 1: 252870-257802 bp 2 RT 2: 300249-307715 bp 3 RT 3: 347992-353967 bp 4 RT 4: 359897-365013 bp 5 RT 5: 386906-392043 bp Neighborhood of RT #1 [252870, 257912] protocat_pcaD KOG1454 YhhI YhhI YhhI RVT-GII GIIM VOC_Bs_YwkD_like HTH_29 HTH_33 DDE_3 Neighborhood of RT #2 [300249, 307715] INT_Rci_Hp1_C YhhI YhhI YhhI RVT-GII GIIM group_II_RT_mat RVT-GII GIIM Arm-DNA-bind_3 Neighborhood of RT #3 [347992, 354044] PRK06123 YhhI YhhI YhhI RVT-GII GIIM LbH_XAT Neighborhood of RT #4 [359897, 365015] HEPN_Cthe2314 YhhI YhhI YhhI RVT-GII GIIM RelB YafQ Neighborhood of RT #5 [386906, 392045] ParE YhhI YhhI YhhI RVT-GII GIIM integrase_gron RplT Feature: gene Location: 252870-253355 bp Feature: domain Description: protocat_pcaD Location: 252885-252966 bp Feature: domain Description: protocat_pcaD Location: 252885-252966 bp Feature: domain Description: KOG1454 Location: 253137-253347 bp Feature: domain Description: KOG1 454 Location: 2531 37-253347 bp Feature: gene Location: 253361-254494 bp Feature: domain Description: YhhI Location: 253397-253727 bp Feature: domain Description: YhhI Location: 253397-253727 bp Feature: domain Description: YhhI Location: 253787-254072 bp Feature: domain Description: YhhI Location: 253787-254072 bp Feature: domain Description: YhhI Location: 254144-254414 bp Feature: domain Description: YhhI Location: 2541 44-25441 4 bp Feature: gene Location: 254729-256054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255008-255665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 255008-255665 bp Feature: domain Description: GIIM Note: maturase Location: 255746-255962 bp Feature: domain Description: GIIM Note: maturase Location: 255746-255962 bp Feature: gene Location: 256578-256859 bp Feature: domain Description: VOC_Bs_YwkD_like Location: 256599-256854 bp Feature: domain Description: VOC_Bs_YwkD_like Location: 256599-256854 bp Feature: gene Location: 256872-257912 bp Feature: domain Description: HTH_29 Location: 256968-257133 bp Feature: domain Description: HTH_29 Location: 256968-2571 33 bp Feature: domain Description: HTH_33 Location: 257172-257340 bp Feature: domain Description: HTH_33 Location: 2571 72-257340 bp Feature: domain Description: DDE_3 Location: 257373-257802 bp Feature: domain Description: DDE_3 Location: 257373-257802 bp Feature: gene Location: 300249-301082 bp Feature: domain Description: INT_Rci_Hp1_C Location: 300507-301038 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 300507-301 038 bp Feature: gene Location: 301090-302229 bp Feature: domain Description: YhhI Location: 301120-301456 bp Feature: domain Description: YhhI Location: 301 1 20-301 456 bp Feature: domain Description: YhhI Location: 301513-301804 bp Feature: domain Description: YhhI Location: 301 51 3-301 804 bp Feature: domain Description: YhhI Location: 301867-302143 bp Feature: domain Description: YhhI Location: 301 867-3021 43 bp Feature: gene Location: 302463-303485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302466-303096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302466-303096 bp Feature: domain Description: GIIM Note: maturase Location: 303177-303393 bp Feature: domain Description: GIIM Note: maturase Location: 3031 77-303393 bp Feature: gene Location: 303443-303790 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 303557-303734 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 303557-303734 bp Feature: gene Location: 303939-304133 bp Feature: gene Location: 304438-305763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 304717-305374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30471 7-305374 bp Feature: domain Description: GIIM Note: maturase Location: 305455-305671 bp Feature: domain Description: GIIM Note: maturase Location: 305455-305671 bp Feature: gene Location: 306205-306717 bp Feature: domain Description: Arm-DNA-bind_3 Location: 306313-306565 bp Feature: domain Description: Arm-DNA-bind_3 Location: 30631 3-306565 bp Feature: gene Location: 306906-307715 bp Feature: gene Location: 347992-348744 bp Feature: domain Description: PRK06123 Location: 348004-348739 bp Feature: domain Description: PRK061 23 Location: 348004-348739 bp Feature: gene Location: 348836-349969 bp Feature: domain Description: YhhI Location: 348872-349202 bp Feature: domain Description: YhhI Location: 348872-349202 bp Feature: domain Description: YhhI Location: 349262-349547 bp Feature: domain Description: YhhI Location: 349262-349547 bp Feature: domain Description: YhhI Location: 349619-349889 bp Feature: domain Description: YhhI Location: 34961 9-349889 bp Feature: gene Location: 350204-351529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350483-351140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350483-351 1 40 bp Feature: domain Description: GIIM Note: maturase Location: 351221-351437 bp Feature: domain Description: GIIM Note: maturase Location: 351 221 -351 437 bp Feature: gene Location: 351990-352163 bp Feature: gene Location: 353382-354044 bp Feature: domain Description: LbH_XAT Location: 353493-353967 bp Feature: domain Description: LbH_XAT Location: 353493-353967 bp Feature: gene Location: 359897-360664 bp Feature: domain Description: HEPN_Cthe2314 Location: 360230-360527 bp Feature: domain Description: HEPN_Cthe231 4 Location: 360230-360527 bp Feature: gene Location: 360706-361839 bp Feature: domain Description: YhhI Location: 360742-361072 bp Feature: domain Description: YhhI Location: 360742-361 072 bp Feature: domain Description: YhhI Location: 361132-361417 bp Feature: domain Description: YhhI Location: 361 1 32-361 41 7 bp Feature: domain Description: YhhI Location: 361489-361759 bp Feature: domain Description: YhhI Location: 361 489-361 759 bp Feature: gene Location: 362074-363399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362353-363010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362353-36301 0 bp Feature: domain Description: GIIM Note: maturase Location: 363091-363307 bp Feature: domain Description: GIIM Note: maturase Location: 363091 -363307 bp Feature: gene Location: 364475-364753 bp Feature: domain Description: RelB Location: 364484-364724 bp Feature: domain Description: RelB Location: 364484-364724 bp Feature: gene Location: 364803-365015 bp Feature: domain Description: YafQ Location: 364818-365013 bp Feature: domain Description: YafQ Location: 36481 8-36501 3 bp Feature: gene Location: 386906-387205 bp Feature: domain Description: ParE Location: 386918-387200 bp Feature: domain Description: ParE Location: 38691 8-387200 bp Feature: gene Location: 387327-388460 bp Feature: domain Description: YhhI Location: 387363-387693 bp Feature: domain Description: YhhI Location: 387363-387693 bp Feature: domain Description: YhhI Location: 387753-388038 bp Feature: domain Description: YhhI Location: 387753-388038 bp Feature: domain Description: YhhI Location: 388110-388380 bp Feature: domain Description: YhhI Location: 3881 1 0-388380 bp Feature: gene Location: 388695-390020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388974-389631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388974-389631 bp Feature: domain Description: GIIM Note: maturase Location: 389712-389928 bp Feature: domain Description: GIIM Note: maturase Location: 38971 2-389928 bp Feature: gene Location: 390671-391645 bp Feature: domain Description: integrase_gron Location: 390698-391643 bp Feature: domain Description: integrase_gron Location: 390698-391 643 bp Feature: gene Location: 391692-392045 bp Feature: domain Description: RplT Location: 391695-392043 bp Feature: domain Description: RplT Location: 391 695-392043 bp Sorry, your 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Associated domains:myRT protocat_pcaD (TIGR02427), KOG1454 (KOG1454, Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) ), YhhI (COG5433), RVT-GII, GIIM (pfam08388), VOC_Bs_YwkD_like (cd08352), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), INT_Rci_Hp1_C (cd00796)
group_II_RT_mat (TIGR04416), Arm-DNA-bind_3 (pfam13356), PRK06123 (SDR family oxidoreductase), LbH_XAT (cd03349), HEPN_Cthe2314 (pfam18730), RelB (pfam04221), YafQ (COG3041), ParE (COG3668), integrase_gron (TIGR02249), RplT (COG0292)