myRT

myRT report for GCA_009763725.1_ASM976372v1

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Seq: CP046791.1 Vibrio navarrensis strain 2462-79 chromosome 1, complete sequence (3275152 bp)
Overview 1 RT 1: 45986-52021 bp 2 RT 2: 608832-616711 bp 3 RT 3: 693905-698017 bp 4 RT 4: 714932-720769 bp 5 RT 5: 787441-792338 bp 6 RT 6: 1752438-1756195 bp 7 RT 7: 1812406-1816560 bp 8 RT 8: 2663252-2668543 bp 9 RT 9: 2898954-2904838 bp 10 RT 10: 3107847-3111561 bp 11 RT 11: 3192441-3197989 bp Neighborhood of RT #1 [45986, 52044] HTH_1 PBP2_Nitroaromatics_like KOG2413 RVT-GII GIIM thiH Neighborhood of RT #2 [608832, 616728] PRK09330 lpxC RVT-GII GIIM PRK13107 PRK08999 Neighborhood of RT #3 [693905, 698019] PRK15095 IspH RVT-GII GIIM PRK11697 PRK11697 Neighborhood of RT #4 [714932, 720789] pheA RaiA RVT-GII GIIM PRK10866 rluD Neighborhood of RT #5 [787441, 792388] chitinase_GH19 COG3979 ChiC_BD RVT-GII GIIM PRK10659 EntD Neighborhood of RT #6 [1752438, 1756239] Phage_GPA RVT-GII GIIM HTH_17 Neighborhood of RT #7 [1812406, 1816598] VOC_like Acetyltransf_10 RVT-GII GIIM CopG_antitoxin Neighborhood of RT #8 [2663252, 2668566] YjiS PRK11139 RVT-GII GIIM PRK00007 Neighborhood of RT #9 [2898954, 2904838] PLN02278 RVT-GII GIIM Neighborhood of RT #10 [3107847, 3111647] PRK13289 PRK13289 RVT-GII GIIM SLR Neighborhood of RT #11 [3192441, 3198015] purH PRK00885 RVT-GII GIIM DUF1481 Feature: gene Location: 45986-46927 bp Feature: domain Description: HTH_1 Location: 46019-46193 bp Feature: domain Description: HTH_1 Location: 4601 9-461 93 bp Feature: domain Description: PBP2_Nitroaromatics_like Location: 46286-46907 bp Feature: domain Description: PBP2_Nitroaromatics_like Location: 46286-46907 bp Feature: gene Location: 47084-48874 bp Feature: domain Description: KOG2413 Location: 47105-48863 bp Feature: domain Description: KOG241 3 Location: 471 05-48863 bp Feature: gene Location: 48985-50298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49204-49816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49204-4981 6 bp Feature: domain Description: GIIM Note: maturase Location: 49870-50074 bp Feature: domain Description: GIIM Note: maturase Location: 49870-50074 bp Feature: gene Location: 50470-50772 bp Feature: gene Location: 50923-52044 bp Feature: domain Description: thiH Location: 50932-52021 bp Feature: domain Description: thiH Location: 50932-52021 bp Feature: gene Location: 608832-610028 bp Feature: domain Description: PRK09330 Location: 608847-610023 bp Feature: domain Description: PRK09330 Location: 608847-61 0023 bp Feature: gene Location: 610127-611044 bp Feature: domain Description: lpxC Location: 610133-611024 bp Feature: domain Description: lpxC Location: 61 01 33-61 1 024 bp Feature: gene Location: 611639-612952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 611858-612470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 1 858-61 2470 bp Feature: domain Description: GIIM Note: maturase Location: 612524-612728 bp Feature: domain Description: GIIM Note: maturase Location: 61 2524-61 2728 bp Feature: gene Location: 613500-616223 bp Feature: domain Description: PRK13107 Location: 613503-616218 bp Feature: domain Description: PRK1 31 07 Location: 61 3503-61 621 8 bp Feature: gene Location: 616330-616728 bp Feature: domain Description: PRK08999 Location: 616333-616711 bp Feature: domain Description: PRK08999 Location: 61 6333-61 671 1 bp Feature: gene Location: 693905-694336 bp Feature: domain Description: PRK15095 Location: 693911-694331 bp Feature: domain Description: PRK1 5095 Location: 69391 1 -694331 bp Feature: gene Location: 694358-695320 bp Feature: domain Description: IspH Location: 694373-695252 bp Feature: domain Description: IspH Location: 694373-695252 bp Feature: gene Location: 695909-697222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 696128-696740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6961 28-696740 bp Feature: domain Description: GIIM Note: maturase Location: 696794-696998 bp Feature: domain Description: GIIM Note: maturase Location: 696794-696998 bp Feature: gene Location: 697292-697819 bp Feature: domain Description: PRK11697 Location: 697295-697811 bp Feature: domain Description: PRK1 1 697 Location: 697295-69781 1 bp Feature: gene Location: 697840-698019 bp Feature: domain Description: PRK11697 Location: 697843-698017 bp Feature: domain Description: PRK1 1 697 Location: 697843-69801 7 bp Feature: gene Location: 714932-716110 bp Feature: domain Description: pheA Location: 714953-716096 bp Feature: domain Description: pheA Location: 71 4953-71 6096 bp Feature: gene Location: 716358-716687 bp Feature: domain Description: RaiA Location: 716361-716658 bp Feature: domain Description: RaiA Location: 71 6361 -71 6658 bp Feature: gene Location: 717575-718888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 717794-718406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 7794-71 8406 bp Feature: domain Description: GIIM Note: maturase Location: 718460-718664 bp Feature: domain Description: GIIM Note: maturase Location: 71 8460-71 8664 bp Feature: gene Location: 718952-719677 bp Feature: domain Description: PRK10866 Location: 718967-719669 bp Feature: domain Description: PRK1 0866 Location: 71 8967-71 9669 bp Feature: gene Location: 719812-720789 bp Feature: domain Description: rluD Location: 719815-720769 bp Feature: domain Description: rluD Location: 71 981 5-720769 bp Feature: gene Location: 787441-787581 bp Feature: gene Location: 787668-789359 bp Feature: domain Description: chitinase_GH19 Location: 787941-788682 bp Feature: domain Description: chitinase_GH1 9 Location: 787941 -788682 bp Feature: domain Description: COG3979 Location: 788970-789099 bp Feature: domain Description: COG3979 Location: 788970-789099 bp Feature: domain Description: ChiC_BD Location: 789249-789291 bp Feature: domain Description: ChiC_BD Location: 789249-789291 bp Feature: gene Location: 789946-791259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790165-790777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7901 65-790777 bp Feature: domain Description: GIIM Note: maturase Location: 790831-791035 bp Feature: domain Description: GIIM Note: maturase Location: 790831 -791 035 bp Feature: gene Location: 791406-791999 bp Feature: domain Description: PRK10659 Location: 791412-791961 bp Feature: domain Description: PRK1 0659 Location: 791 41 2-791 961 bp Feature: gene Location: 792089-792388 bp Feature: domain Description: EntD Location: 792125-792338 bp Feature: domain Description: EntD Location: 7921 25-792338 bp Feature: gene Location: 1752438-1753388 bp Feature: domain Description: Phage_GPA Location: 1752495-1753044 bp Feature: domain Description: Phage_GPA Location: 1 752495-1 753044 bp Feature: gene Location: 1753579-1753722 bp Feature: gene Location: 1753777-1755090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1753996-1754608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 753996-1 754608 bp Feature: domain Description: GIIM Note: maturase Location: 1754662-1754866 bp Feature: domain Description: GIIM Note: maturase Location: 1 754662-1 754866 bp Feature: gene Location: 1755561-1755950 bp Feature: gene Location: 1755943-1756239 bp Feature: domain Description: HTH_17 Location: 1756030-1756195 bp Feature: domain Description: HTH_1 7 Location: 1 756030-1 7561 95 bp Feature: gene Location: 1812406-1812882 bp Feature: domain Description: VOC_like Location: 1812523-1812874 bp Feature: domain Description: VOC_like Location: 1 81 2523-1 81 2874 bp Feature: gene Location: 1812930-1813373 bp Feature: domain Description: Acetyltransf_10 Location: 1813074-1813338 bp Feature: domain Description: Acetyltransf_1 0 Location: 1 81 3074-1 81 3338 bp Feature: gene Location: 1814436-1815749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1814655-1815267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 4655-1 81 5267 bp Feature: domain Description: GIIM Note: maturase Location: 1815321-1815525 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 5321 -1 81 5525 bp Feature: gene Location: 1815921-1816241 bp Feature: gene Location: 1816353-1816598 bp Feature: domain Description: CopG_antitoxin Location: 1816446-1816560 bp Feature: domain Description: CopG_antitoxin Location: 1 81 6446-1 81 6560 bp Feature: gene Location: 2663252-2663455 bp Feature: domain Description: YjiS Location: 2663297-2663453 bp Feature: domain Description: YjiS Location: 2663297-2663453 bp Feature: gene Location: 2663555-2664484 bp Feature: domain Description: PRK11139 Location: 2663558-2664437 bp Feature: domain Description: PRK1 1 1 39 Location: 2663558-2664437 bp Feature: gene Location: 2664567-2665880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2664786-2665398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2664786-2665398 bp Feature: domain Description: GIIM Note: maturase Location: 2665452-2665656 bp Feature: domain Description: GIIM Note: maturase Location: 2665452-2665656 bp Feature: gene Location: 2666052-2666354 bp Feature: gene Location: 2666479-2668566 bp Feature: domain Description: PRK00007 Location: 2666488-2668543 bp Feature: domain Description: PRK00007 Location: 2666488-2668543 bp Feature: gene Location: 2898954-2899091 bp Feature: gene Location: 2899682-2901328 bp Feature: domain Description: PLN02278 Location: 2899730-2901107 bp Feature: domain Description: PLN02278 Location: 2899730-2901 1 07 bp Feature: gene Location: 2901662-2902975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2901881-2902493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2901 881 -2902493 bp Feature: domain Description: GIIM Note: maturase Location: 2902547-2902751 bp Feature: domain Description: GIIM Note: maturase Location: 2902547-2902751 bp Feature: gene Location: 2903147-2903449 bp Feature: gene Location: 2904404-2904838 bp Feature: gene Location: 3107847-3108659 bp Feature: domain Description: PRK13289 Location: 3107850-3108618 bp Feature: domain Description: PRK1 3289 Location: 31 07850-31 0861 8 bp Feature: gene Location: 3108665-3109030 bp Feature: domain Description: PRK13289 Location: 3108668-3109025 bp Feature: domain Description: PRK1 3289 Location: 31 08668-31 09025 bp Feature: gene Location: 3109093-3110406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3109312-3109924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 0931 2-31 09924 bp Feature: domain Description: GIIM Note: maturase Location: 3109978-3110182 bp Feature: domain Description: GIIM Note: maturase Location: 31 09978-31 1 01 82 bp Feature: gene Location: 3110578-3110880 bp Feature: gene Location: 3111006-3111647 bp Feature: domain Description: SLR Location: 3111204-3111561 bp Feature: domain Description: SLR Location: 31 1 1 204-31 1 1 561 bp Feature: gene Location: 3192441-3194033 bp Feature: domain Description: purH Location: 3192465-3194031 bp Feature: domain Description: purH Location: 31 92465-31 94031 bp Feature: gene Location: 3194091-3195377 bp Feature: domain Description: PRK00885 Location: 3194094-3195363 bp Feature: domain Description: PRK00885 Location: 31 94094-31 95363 bp Feature: gene Location: 3195428-3196741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3195647-3196259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 95647-31 96259 bp Feature: domain Description: GIIM Note: maturase Location: 3196313-3196517 bp Feature: domain Description: GIIM Note: maturase Location: 31 9631 3-31 9651 7 bp Feature: gene Location: 3196913-3197209 bp Feature: gene Location: 3197314-3198015 bp Feature: domain Description: DUF1481 Location: 3197410-3197989 bp Feature: domain Description: DUF1 481 Location: 31 9741 0-31 97989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_Nitroaromatics_like (cd08417), KOG2413 (KOG2413, Xaa-Pro aminopeptidase ), RVT-GII, GIIM (pfam08388), thiH (TIGR02351), PRK09330 (cell division protein FtsZ; Validated), lpxC (TIGR00325), PRK13107 (preprotein translocase subunit SecA; Reviewed), PRK08999 (Nudix family hydrolase)
PRK15095 (FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional), IspH (COG0761), PRK11697 (two-component system response regulator BtsR), pheA (PRK10622), RaiA (COG1544), PRK10866 (outer membrane protein assembly factor BamD), rluD (PRK11180), chitinase_GH19 (cd00325), COG3979 (Chitodextrinase ), ChiC_BD (cd12215)
PRK10659 (acetate uptake transporter), EntD (COG2977), Phage_GPA (pfam05840), HTH_17 (pfam12728), VOC_like (cd16355), Acetyltransf_10 (pfam13673), CopG_antitoxin (pfam12441), YjiS (COG5457), PRK11139 (DNA-binding transcriptional activator GcvA; Provisional), PRK00007 (elongation factor G; Reviewed)
PLN02278 (succinic semialdehyde dehydrogenase), PRK13289 (NO-inducible flavohemoprotein), SLR (sd00010), purH (TIGR00355), PRK00885 (phosphoribosylamine--glycine ligase; Provisional), DUF1481 (pfam07356)

Seq: CP046792.1 Vibrio navarrensis strain 2462-79 chromosome 2, complete sequence (1506569 bp)
Overview 1 RT 1: 626919-631837 bp 2 RT 2: 1008489-1012924 bp Neighborhood of RT #1 [626919, 631851] CyoD PRK13362 RVT-GII GIIM TPR ectoine_EctA Neighborhood of RT #2 [1008489, 1012924] YgiN Arginase RhaT RVT-GII GIIM RVT-GII Feature: gene Location: 626919-627239 bp Feature: domain Description: CyoD Location: 626949-627228 bp Feature: domain Description: CyoD Location: 62 6949-62 72 2 8 bp Feature: gene Location: 627241-628107 bp Feature: domain Description: PRK13362 Location: 627247-628087 bp Feature: domain Description: PRK13362 Location: 62 72 47-62 8087 bp Feature: gene Location: 628697-630010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628916-629528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 8916-62 952 8 bp Feature: domain Description: GIIM Note: maturase Location: 629582-629786 bp Feature: domain Description: GIIM Note: maturase Location: 62 9582 -62 9786 bp Feature: gene Location: 630045-630929 bp Feature: domain Description: TPR Location: 630567-630798 bp Feature: domain Description: TPR Location: 630567-630798 bp Feature: gene Location: 631291-631851 bp Feature: domain Description: ectoine_EctA Location: 631378-631837 bp Feature: domain Description: ectoine_EctA Location: 631378-631837 bp Feature: gene Location: 1008489-1009694 bp Feature: domain Description: YgiN Location: 1008495-1008711 bp Feature: domain Description: YgiN Location: 1008495-1008711 bp Feature: domain Description: Arginase Location: 1008918-1009674 bp Feature: domain Description: Arginase Location: 1008918-1009674 bp Feature: gene Location: 1009810-1010712 bp Feature: domain Description: RhaT Location: 1009840-1010677 bp Feature: domain Description: RhaT Location: 1009840-1010677 bp Feature: gene Location: 1010831-1011724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010834-1011242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010834-10112 42 bp Feature: domain Description: GIIM Note: maturase Location: 1011296-1011500 bp Feature: domain Description: GIIM Note: maturase Location: 10112 96-1011500 bp Feature: gene Location: 1011724-1012143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1011943-1012132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1011943-1012 132 bp Feature: gene Location: 1012315-1012617 bp Feature: gene Location: 1012733-1012924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CyoD (TIGR02847), PRK13362 (protoheme IX farnesyltransferase; Provisional), RVT-GII, GIIM (pfam08388), TPR (smart00028), ectoine_EctA (TIGR02406), YgiN (COG1359), Arginase (pfam00491), RhaT (TIGR00776)