myRT

myRT report for GCA_009763805.1_ASM976380v1

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Seq: CP046804.1 Vibrio cidicii strain 2756-81 chromosome 1, complete sequence (3431466 bp)
Overview 1 RT 1: 152393-155834 bp 2 RT 2: 197114-203913 bp 3 RT 3: 898018-906766 bp 4 RT 4: 922621-925662 bp 5 RT 5: 1272703-1277289 bp 6 RT 6: 1316845-1319687 bp 7 RT 7: 1575299-1584851 bp 8 RT 8: 1821639-1827055 bp 9 RT 9: 1928268-1930979 bp 10 RT 10: 2305249-2308096 bp 11 RT 11: 3330987-3336252 bp Neighborhood of RT #1 [152393, 155941] DUF3622 RVT-GII GIIM COG3608 Neighborhood of RT #2 [197114, 203936] PRK11007 trehalose_treC RVT-GII GIIM OMP_b-brl Neighborhood of RT #3 [898018, 906766] RhaA rhamnulo_kin RVT-GII GIIM ZnMc_MMP_like_2 Neighborhood of RT #4 [922621, 925662] PRK15274 FimA RVT-UG4 Neighborhood of RT #5 [1272703, 1277289] RVT-Retrons Neighborhood of RT #6 [1316845, 1319687] InsE PHA02517 RVT_N RVT-GII Neighborhood of RT #7 [1575299, 1584859] RluA-like Tar RVT-GII GIIM RVT-GII GIIM RVT-GII GIIM RVT-GII SLC6sbd_Tyt1-Like Neighborhood of RT #8 [1821639, 1827060] COG3174 ECM4 RVT-GII GIIM PRK15079 Neighborhood of RT #9 [1928268, 1930979] LysR PBP2_CrgA_like RVT-GII GIIM Neighborhood of RT #10 [2305249, 2308096] PRK03814 group_II_RT_mat RVT-GII Neighborhood of RT #11 [3330987, 3336263] parC_Gneg RVT-GII group_II_RT_mat protease_degS Feature: gene Location: 152393-152710 bp Feature: domain Description: DUF3622 Location: 152396-152603 bp Feature: domain Description: DUF3622 Location: 1 52396-1 52603 bp Feature: gene Location: 152967-153098 bp Feature: gene Location: 153308-154621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153527-154139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 53527-1 541 39 bp Feature: domain Description: GIIM Note: maturase Location: 154193-154397 bp Feature: domain Description: GIIM Note: maturase Location: 1 541 93-1 54397 bp Feature: gene Location: 154680-155180 bp Feature: gene Location: 155261-155941 bp Feature: domain Description: COG3608 Location: 155264-155834 bp Feature: domain Description: COG3608 Location: 1 55264-1 55834 bp Feature: gene Location: 197114-198538 bp Feature: domain Description: PRK11007 Location: 197117-198524 bp Feature: domain Description: PRK1 1 007 Location: 1 971 1 7-1 98524 bp Feature: gene Location: 198609-200294 bp Feature: domain Description: trehalose_treC Location: 198639-200280 bp Feature: domain Description: trehalose_treC Location: 1 98639-200280 bp Feature: gene Location: 200886-202199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201105-201717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 1 05-201 71 7 bp Feature: domain Description: GIIM Note: maturase Location: 201771-201975 bp Feature: domain Description: GIIM Note: maturase Location: 201 771 -201 975 bp Feature: gene Location: 202234-203109 bp Feature: gene Location: 203409-203936 bp Feature: domain Description: OMP_b-brl Location: 203442-203913 bp Feature: domain Description: OMP_b-brl Location: 203442-20391 3 bp Feature: gene Location: 898018-899277 bp Feature: domain Description: RhaA Location: 898030-899275 bp Feature: domain Description: RhaA Location: 898030-899275 bp Feature: gene Location: 899290-900729 bp Feature: domain Description: rhamnulo_kin Location: 899305-900655 bp Feature: domain Description: rhamnulo_kin Location: 899305-900655 bp Feature: gene Location: 901481-902794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901700-902312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901 700-90231 2 bp Feature: domain Description: GIIM Note: maturase Location: 902366-902570 bp Feature: domain Description: GIIM Note: maturase Location: 902366-902570 bp Feature: gene Location: 902874-905813 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 902883-903870 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 902883-903870 bp Feature: gene Location: 905954-906766 bp Feature: gene Location: 922621-923247 bp Feature: domain Description: PRK15274 Location: 922627-923236 bp Feature: domain Description: PRK1 5274 Location: 922627-923236 bp Feature: gene Location: 923258-923833 bp Feature: domain Description: FimA Location: 923384-923831 bp Feature: domain Description: FimA Location: 923384-923831 bp Feature: gene Location: 923799-924785 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 924177-924618 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 9241 77-92461 8 bp Feature: gene Location: 924773-925201 bp Feature: gene Location: 925324-925662 bp Feature: gene Location: 1272703-1273128 bp Feature: gene Location: 1273159-1273290 bp Feature: gene Location: 1274197-1276050 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1274332-1275049 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 274332-1 275049 bp Feature: gene Location: 1276537-1276707 bp Feature: gene Location: 1276849-1277289 bp Feature: gene Location: 1316845-1317156 bp Feature: domain Description: InsE Location: 1316848-1317142 bp Feature: domain Description: InsE Location: 1 31 6848-1 31 71 42 bp Feature: gene Location: 1317276-1318025 bp Feature: domain Description: PHA02517 Location: 1317288-1318005 bp Feature: domain Description: PHA0251 7 Location: 1 31 7288-1 31 8005 bp Feature: gene Location: 1318029-1318967 bp Feature: domain Description: RVT_N Location: 1318083-1318323 bp Feature: domain Description: RVT_N Location: 1 31 8083-1 31 8323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1318371-1318962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 8371 -1 31 8962 bp Feature: gene Location: 1319109-1319336 bp Feature: gene Location: 1319475-1319687 bp Feature: gene Location: 1575299-1575991 bp Feature: domain Description: RluA-like Location: 1575302-1575959 bp Feature: domain Description: RluA-like Location: 1 575302-1 575959 bp Feature: gene Location: 1576097-1577737 bp Feature: domain Description: Tar Location: 1576481-1577723 bp Feature: domain Description: Tar Location: 1 576481 -1 577723 bp Feature: gene Location: 1577833-1579146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1578052-1578664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 578052-1 578664 bp Feature: domain Description: GIIM Note: maturase Location: 1578718-1578922 bp Feature: domain Description: GIIM Note: maturase Location: 1 57871 8-1 578922 bp Feature: gene Location: 1579318-1579620 bp Feature: gene Location: 1579723-1581036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1579942-1580554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 579942-1 580554 bp Feature: domain Description: GIIM Note: maturase Location: 1580608-1580812 bp Feature: domain Description: GIIM Note: maturase Location: 1 580608-1 58081 2 bp Feature: gene Location: 1581208-1581510 bp Feature: gene Location: 1581613-1582242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1581634-1581760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 581 634-1 581 760 bp Feature: domain Description: GIIM Note: maturase Location: 1581814-1582018 bp Feature: domain Description: GIIM Note: maturase Location: 1 581 81 4-1 58201 8 bp Feature: gene Location: 1582217-1582927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1582436-1582922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 582436-1 582922 bp Feature: gene Location: 1583099-1583401 bp Feature: gene Location: 1583516-1584859 bp Feature: domain Description: SLC6sbd_Tyt1-Like Location: 1583540-1584851 bp Feature: domain Description: SLC6sbd_Tyt1 -Like Location: 1 583540-1 584851 bp Feature: gene Location: 1821639-1822925 bp Feature: domain Description: COG3174 Location: 1821774-1822902 bp Feature: domain Description: COG31 74 Location: 1 821 774-1 822902 bp Feature: gene Location: 1823033-1823977 bp Feature: domain Description: ECM4 Location: 1823036-1823972 bp Feature: domain Description: ECM4 Location: 1 823036-1 823972 bp Feature: gene Location: 1824151-1825464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1824370-1824982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 824370-1 824982 bp Feature: domain Description: GIIM Note: maturase Location: 1825036-1825240 bp Feature: domain Description: GIIM Note: maturase Location: 1 825036-1 825240 bp Feature: gene Location: 1825637-1825939 bp Feature: gene Location: 1826065-1827060 bp Feature: domain Description: PRK15079 Location: 1826074-1827055 bp Feature: domain Description: PRK1 5079 Location: 1 826074-1 827055 bp Feature: gene Location: 1928268-1928954 bp Feature: domain Description: LysR Location: 1928271-1928946 bp Feature: domain Description: LysR Location: 1 928271 -1 928946 bp Feature: gene Location: 1928974-1929156 bp Feature: domain Description: PBP2_CrgA_like Location: 1928977-1929124 bp Feature: domain Description: PBP2_CrgA_like Location: 1 928977-1 9291 24 bp Feature: gene Location: 1929191-1930192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1929236-1929710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 929236-1 92971 0 bp Feature: domain Description: GIIM Note: maturase Location: 1929764-1929968 bp Feature: domain Description: GIIM Note: maturase Location: 1 929764-1 929968 bp Feature: gene Location: 1930381-1930551 bp Feature: gene Location: 1930677-1930979 bp Feature: gene Location: 2305249-2305527 bp Feature: domain Description: PRK03814 Location: 2305273-2305525 bp Feature: domain Description: PRK0381 4 Location: 2305273-2305525 bp Feature: gene Location: 2305973-2306533 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2305982-2306291 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2305982-2306291 bp Feature: gene Location: 2306598-2307287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2306817-2307285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230681 7-2307285 bp Feature: gene Location: 2307460-2307762 bp Feature: gene Location: 2307866-2308096 bp Feature: gene Location: 3330987-3333263 bp Feature: domain Description: parC_Gneg Location: 3331017-3333219 bp Feature: domain Description: parC_Gneg Location: 3331 01 7-333321 9 bp Feature: gene Location: 3333497-3333625 bp Feature: gene Location: 3333838-3334626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3334057-3334597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3334057-3334597 bp Feature: gene Location: 3334592-3335152 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3334601-3334910 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3334601 -333491 0 bp Feature: gene Location: 3335196-3336263 bp Feature: domain Description: protease_degS Location: 3335205-3336252 bp Feature: domain Description: protease_degS Location: 3335205-3336252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3622 (pfam12286), RVT-GII, GIIM (pfam08388), COG3608 (Predicted deacylase ), PRK11007 (PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional), trehalose_treC (TIGR02403), OMP_b-brl (pfam13505), RhaA (pfam06134), rhamnulo_kin (TIGR02627), ZnMc_MMP_like_2 (cd04276)
PRK15274 (putative periplasmic fimbrial chaperone protein SteC; Provisional), FimA (pfam16970), RVT-UG4, RVT-Retrons, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), RluA-like (TIGR01621), Tar (COG0840), SLC6sbd_Tyt1-Like (cd10336)
COG3174 (Uncharacterized membrane protein, DUF4010 family ), ECM4 (COG0435), PRK15079 (oligopeptide ABC transporter ATP-binding protein OppF; Provisional), LysR (COG0583), PBP2_CrgA_like (cd08422), PRK03814 (oxaloacetate decarboxylase subunit gamma; Provisional), group_II_RT_mat (TIGR04416), parC_Gneg (TIGR01062), protease_degS (TIGR02038)

Seq: CP046803.1 Vibrio cidicii strain 2756-81 chromosome 2, complete sequence (1318756 bp)
Overview 1 RT 1: 126716-131467 bp Neighborhood of RT #1 [126716, 131478] PRK11689 RVT-GII GIIM COG3965 LysR Feature: gene Location: 126716-127603 bp Feature: domain Description: PRK11689 Location: 126722-127595 bp Feature: domain Description: PRK11689 Location: 12 672 2 -12 7595 bp Feature: gene Location: 127821-127949 bp Feature: gene Location: 128162-129475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128381-128993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 8381-12 8993 bp Feature: domain Description: GIIM Note: maturase Location: 129047-129251 bp Feature: domain Description: GIIM Note: maturase Location: 12 9047-12 92 51 bp Feature: gene Location: 129521-130414 bp Feature: domain Description: COG3965 Location: 129524-130412 bp Feature: domain Description: COG3965 Location: 12 952 4-130412 bp Feature: gene Location: 130600-131478 bp Feature: domain Description: LysR Location: 130603-131467 bp Feature: domain Description: LysR Location: 130603-131467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11689 (aromatic amino acid efflux DMT transporter YddG), RVT-GII, GIIM (pfam08388), COG3965 (Predicted Co/Zn/Cd cation transporter, cation efflux family ), LysR (COG0583)