myRT

myRT report for GCA_009763885.1_ASM976388v1

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Seq: CP046848.1 Vibrio cincinnatiensis strain F8054 chromosome 1, complete sequence (2768337 bp)
Overview 1 RT 1: 1170306-1174688 bp Neighborhood of RT #1 [1170306, 1174720] RVT_N RVT-GII GIIM HNHc PRK10938 SapB Feature: gene Location: 1170306-1170470 bp Feature: gene Location: 1170523-1170651 bp Feature: gene Location: 1170678-1172417 bp Feature: domain Description: RVT_N Location: 1170795-1171038 bp Feature: domain Description: RVT_N Location: 1 1 70795-1 1 71 038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1171083-1171728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 71 083-1 1 71 728 bp Feature: domain Description: GIIM Note: maturase Location: 1171782-1172013 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 71 782-1 1 7201 3 bp Feature: domain Description: HNHc Note: nucleases Location: 1172241-1172391 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 72241 -1 1 72391 bp Feature: gene Location: 1172679-1174154 bp Feature: domain Description: PRK10938 Location: 1172721-1174116 bp Feature: domain Description: PRK1 0938 Location: 1 1 72721 -1 1 741 1 6 bp Feature: gene Location: 1174172-1174720 bp Feature: domain Description: SapB Location: 1174301-1174688 bp Feature: domain Description: SapB Location: 1 1 74301 -1 1 74688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10938 (putative molybdenum transport ATP-binding protein ModF; Provisional), SapB (smart00741)

Seq: CP046849.1 Vibrio cincinnatiensis strain F8054 chromosome 2, complete sequence (1034285 bp)
Overview 1 RT 1: 89084-94598 bp 2 RT 2: 114346-118696 bp 3 RT 3: 968016-972684 bp Neighborhood of RT #1 [89084, 94598] RVT-Retrons DUF262 DUF1524 Neighborhood of RT #2 [114346, 118704] ParE DUF3265 RVT-GII GIIM YhhI YhhI rve_2 YiijF Neighborhood of RT #3 [968016, 973235] RVT-GII GIIM YhhI YhhI YhhI HNH_5 HNH_5 Feature: gene Location: 89084-89299 bp Feature: gene Location: 89309-90331 bp Feature: gene Location: 90315-91256 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90423-91014 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9042 3-91014 bp Feature: gene Location: 91374-93107 bp Feature: domain Description: DUF262 Location: 91407-92100 bp Feature: domain Description: DUF2 62 Location: 91407-92 100 bp Feature: domain Description: DUF1524 Location: 92694-93075 bp Feature: domain Description: DUF152 4 Location: 92 694-93075 bp Feature: gene Location: 94128-94598 bp Feature: gene Location: 114346-114648 bp Feature: domain Description: ParE Location: 114352-114634 bp Feature: domain Description: ParE Location: 114352 -114634 bp Feature: gene Location: 114651-114818 bp Feature: domain Description: DUF3265 Location: 114690-114756 bp Feature: domain Description: DUF32 65 Location: 114690-114756 bp Feature: gene Location: 115474-116799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115753-116410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115753-116410 bp Feature: domain Description: GIIM Note: maturase Location: 116491-116707 bp Feature: domain Description: GIIM Note: maturase Location: 116491-116707 bp Feature: gene Location: 117033-118085 bp Feature: domain Description: YhhI Location: 117063-117399 bp Feature: domain Description: YhhI Location: 117063-117399 bp Feature: domain Description: YhhI Location: 117456-117747 bp Feature: domain Description: YhhI Location: 117456-117747 bp Feature: domain Description: rve_2 Location: 117945-118077 bp Feature: domain Description: rve_2 Location: 117945-118077 bp Feature: gene Location: 118123-118704 bp Feature: domain Description: YiijF Location: 118171-118696 bp Feature: domain Description: YiijF Location: 118171-118696 bp Feature: gene Location: 968016-968624 bp Feature: gene Location: 968716-968958 bp Feature: gene Location: 969655-970980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969934-970591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969934-970591 bp Feature: domain Description: GIIM Note: maturase Location: 970672-970888 bp Feature: domain Description: GIIM Note: maturase Location: 970672 -970888 bp Feature: gene Location: 971215-972348 bp Feature: domain Description: YhhI Location: 971251-971581 bp Feature: domain Description: YhhI Location: 9712 51-971581 bp Feature: domain Description: YhhI Location: 971641-971929 bp Feature: domain Description: YhhI Location: 971641-97192 9 bp Feature: domain Description: YhhI Location: 971998-972268 bp Feature: domain Description: YhhI Location: 971998-972 2 68 bp Feature: gene Location: 972405-973235 bp Feature: domain Description: HNH_5 Location: 972471-972534 bp Feature: domain Description: HNH_5 Location: 972 471-972 534 bp Feature: domain Description: HNH_5 Location: 972624-972684 bp Feature: domain Description: HNH_5 Location: 972 62 4-972 684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF262 (pfam03235), DUF1524 (pfam07510), ParE (COG3668), DUF3265 (pfam11665), RVT-GII, GIIM (pfam08388), YhhI (COG5433), rve_2 (pfam13333), YiijF (COG3738)
HNH_5 (pfam14279)