myRT

myRT report for GCA_009764055.1_ASM976405v1

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Seq: CP046831.1 Vibrio parahaemolyticus strain 2012AW-0224 chromosome 1, complete sequence (3535345 bp)
Overview 1 RT 1: 2508050-2511821 bp 2 RT 2: 2516504-2522398 bp Neighborhood of RT #1 [2508050, 2511821] DUF4832 ArgO RVT_N RVT-GII GIIM Neighborhood of RT #2 [2516504, 2522427] DDE_Tnp_1 RVT-Retrons SEL1 COG3950 COG3950 Feature: gene Location: 2508050-2508544 bp Feature: domain Description: DUF4832 Location: 2508134-2508491 bp Feature: domain Description: DUF4832 Location: 25081 34-2508491 bp Feature: gene Location: 2508629-2508913 bp Feature: domain Description: ArgO Location: 2508632-2508887 bp Feature: domain Description: ArgO Location: 2508632-2508887 bp Feature: gene Location: 2509457-2511088 bp Feature: domain Description: RVT_N Location: 2509664-2509907 bp Feature: domain Description: RVT_N Location: 2509664-2509907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2509952-2510579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2509952-251 0579 bp Feature: domain Description: GIIM Note: maturase Location: 2510639-2510864 bp Feature: domain Description: GIIM Note: maturase Location: 251 0639-251 0864 bp Feature: gene Location: 2511286-2511540 bp Feature: gene Location: 2511543-2511821 bp Feature: gene Location: 2516504-2517856 bp Feature: gene Location: 2518990-2520198 bp Feature: domain Description: DDE_Tnp_1 Location: 2519263-2519971 bp Feature: domain Description: DDE_Tnp_1 Location: 251 9263-251 9971 bp Feature: gene Location: 2520353-2520811 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2520356-2520566 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2520356-2520566 bp Feature: gene Location: 2520812-2521246 bp Feature: domain Description: SEL1 Location: 2520881-2520956 bp Feature: domain Description: SEL1 Location: 2520881 -2520956 bp Feature: domain Description: COG3950 Location: 2520995-2521202 bp Feature: domain Description: COG3950 Location: 2520995-2521 202 bp Feature: gene Location: 2521264-2522427 bp Feature: domain Description: COG3950 Location: 2521291-2522398 bp Feature: domain Description: COG3950 Location: 2521 291 -2522398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4832 (pfam16116), ArgO (COG1279), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), RVT-Retrons, SEL1 (smart00671), COG3950 (Predicted ATP-binding protein involved in virulence )

Seq: CP046829.1 Vibrio parahaemolyticus strain 2012AW-0224 chromosome 2, complete sequence (1811450 bp)
Overview 1 RT 1: 1778799-1788757 bp Neighborhood of RT #1 [1778799, 1788789] INPP5c Peptidases_S8_Thermitase_like Peptidases_S8_Thermitase_like RVT_N RVT-GII GIIM KOG1803 DNA2 PLDc_yjhR_C_like Feature: gene Location: 1778799-1780292 bp Feature: domain Description: INPP5c Location: 1779087-1779510 bp Feature: domain Description: INPP5c Location: 1779087-1779510 bp Feature: gene Location: 1780384-1782294 bp Feature: domain Description: Peptidases_S8_Thermitase_like Location: 1780903-1781179 bp Feature: domain Description: Peptidases_S8_Thermitase_like Location: 1780903-1781179 bp Feature: domain Description: Peptidases_S8_Thermitase_like Location: 1781272-1781734 bp Feature: domain Description: Peptidases_S8_Thermitase_like Location: 17812 72 -1781734 bp Feature: gene Location: 1782700-1784331 bp Feature: domain Description: RVT_N Location: 1782907-1783150 bp Feature: domain Description: RVT_N Location: 1782 907-1783150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1783195-1783822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1783195-178382 2 bp Feature: domain Description: GIIM Note: maturase Location: 1783882-1784107 bp Feature: domain Description: GIIM Note: maturase Location: 1783882 -1784107 bp Feature: gene Location: 1785105-1785239 bp Feature: gene Location: 1785271-1788789 bp Feature: domain Description: KOG1803 Location: 1786054-1786288 bp Feature: domain Description: KOG1803 Location: 1786054-17862 88 bp Feature: domain Description: DNA2 Location: 1787287-1788184 bp Feature: domain Description: DNA2 Location: 17872 87-1788184 bp Feature: domain Description: PLDc_yjhR_C_like Location: 1788319-1788757 bp Feature: domain Description: PLDc_yjhR_C_like Location: 1788319-1788757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INPP5c (cd09074), Peptidases_S8_Thermitase_like (cd07484), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), KOG1803 (KOG1803, DNA helicase ), DNA2 (COG1112), PLDc_yjhR_C_like (cd09118)