myRT

myRT report for GCA_009792235.1_ASM979223v1

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Seq: CP046974.1 Microcystis aeruginosa FD4 plasmid p1FD4, complete sequence (43611 bp)
Overview 1 RT 1: 25246-29513 bp Neighborhood of RT #1 [25246, 29536] YfmG RVT-DGRs HTH_Tnp_4 DDE_Tnp_4 PIN_2 Feature: gene Location: 25246-25470 bp Feature: gene Location: 25692-26627 bp Ori: QGZ92925.1 Feature: domain Description: YfmG Location: 25767-26607 bp Feature: domain Description: YfmG Location: 25767-26607 bp Feature: gene Location: 26945-28003 bp Ori: QGZ92926.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27155-27797 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 271 55-27797 bp Feature: gene Location: 28178-29035 bp Ori: QGZ92942.1 Feature: domain Description: HTH_Tnp_4 Location: 28337-28484 bp Feature: domain Description: HTH_Tnp_4 Location: 28337-28484 bp Feature: domain Description: DDE_Tnp_4 Location: 28550-29003 bp Feature: domain Description: DDE_Tnp_4 Location: 28550-29003 bp Feature: gene Location: 29255-29536 bp Ori: QGZ92927.1 Feature: domain Description: PIN_2 Location: 29291-29513 bp Feature: domain Description: PIN_2 Location: 29291 -2951 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), PIN_2 (pfam10130)

Seq: CP046973.1 Microcystis aeruginosa FD4 chromosome, complete genome (5449501 bp)
Overview 1 RT 1: 2121713-2127132 bp 2 RT 2: 2339721-2346948 bp 3 RT 3: 4484482-4489699 bp 4 RT 4: 4966457-4974067 bp Neighborhood of RT #1 [2121713, 2127179] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Uma2 SAVED SAVED Neighborhood of RT #2 [2339721, 2347245] COG3442 MurE RVT_N RVT-GII GIIM McrA DegQ LptC_YrbK LptC_YrbK LptC_YrbK Neighborhood of RT #3 [4484482, 4489719] doc_partner RVT-DGRs Avd_like CHAT NB-ARC YfmG Neighborhood of RT #4 [4966457, 4974141] RVT_N RVT-GII GIIM McrA ResIII HTH_Tnp_4 DDE_Tnp_4 Feature: gene Location: 2121713-2121880 bp Feature: gene Location: 2122860-2123135 bp Ori: QGZ89986.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 2122869-2123097 bp Feature: domain Description: Cas2 _I_II_III Location: 2 12 2 869-2 12 3097 bp Feature: gene Location: 2123135-2125216 bp Ori: QGZ89987.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2123348-2123948 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 12 3348-2 12 3948 bp Feature: domain Description: Cas1_I-II-III Location: 2124221-2125178 bp Feature: domain Description: Cas1_I-II-III Location: 2 12 42 2 1-2 12 5178 bp Feature: gene Location: 2125533-2126132 bp Feature: domain Description: Uma2 Location: 2125566-2126109 bp Feature: domain Description: Uma2 Location: 2 12 5566-2 12 6109 bp Feature: gene Location: 2126148-2127179 bp Ori: QGZ89988.1 Feature: domain Description: SAVED Location: 2126547-2126760 bp Feature: domain Description: SAVED Location: 2 12 6547-2 12 6760 bp Feature: domain Description: SAVED Location: 2126805-2127132 bp Feature: domain Description: SAVED Location: 2 12 6805-2 12 7132 bp Feature: gene Location: 2339721-2340525 bp Feature: domain Description: COG3442 Location: 2339733-2339922 bp Feature: domain Description: COG3442 Location: 2 339733-2 33992 2 bp Feature: gene Location: 2340717-2342045 bp Ori: QGZ90166.1 Feature: domain Description: MurE Location: 2340726-2342040 bp Feature: domain Description: MurE Location: 2 34072 6-2 342 040 bp Feature: gene Location: 2342870-2344708 bp Gene: ltrA Feature: domain Description: RVT_N Location: 2342933-2343176 bp Feature: domain Description: RVT_N Location: 2 342 933-2 343176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2343221-2343890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3432 2 1-2 343890 bp Feature: domain Description: GIIM Note: maturase Location: 2343989-2344202 bp Feature: domain Description: GIIM Note: maturase Location: 2 343989-2 3442 02 bp Feature: domain Description: McrA Location: 2344325-2344595 bp Feature: domain Description: McrA Location: 2 34432 5-2 344595 bp Feature: gene Location: 2344831-2346021 bp Ori: QGZ92745.1 Feature: domain Description: DegQ Location: 2344891-2346007 bp Feature: domain Description: DegQ Location: 2 344891-2 346007 bp Feature: gene Location: 2346096-2347245 bp Gene: lptC Feature: domain Description: LptC_YrbK Location: 2346144-2346549 bp Feature: domain Description: LptC_YrbK Location: 2 346144-2 346549 bp Feature: domain Description: LptC_YrbK Location: 2346573-2346747 bp Feature: domain Description: LptC_YrbK Location: 2 346573-2 346747 bp Feature: domain Description: LptC_YrbK Location: 2346777-2346948 bp Feature: domain Description: LptC_YrbK Location: 2 346777-2 346948 bp Feature: gene Location: 4484482-4484706 bp Ori: QGZ91847.1 Feature: domain Description: doc_partner Location: 4484497-4484704 bp Feature: domain Description: doc_partner Location: 4484497-4484704 bp Feature: gene Location: 4484854-4485021 bp Feature: gene Location: 4485073-4485714 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4485286-4485712 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44852 86-4485712 bp Feature: gene Location: 4485740-4486093 bp Ori: QGZ91849.1 Gene: avd Feature: domain Description: Avd_like Location: 4485758-4486064 bp Feature: domain Description: Avd_like Location: 4485758-4486064 bp Feature: gene Location: 4486654-4489719 bp Ori: QGZ92850.1 Feature: domain Description: CHAT Location: 4486771-4487266 bp Feature: domain Description: CHAT Location: 4486771-44872 66 bp Feature: domain Description: NB-ARC Location: 4487500-4488211 bp Feature: domain Description: NB-ARC Location: 4487500-44882 11 bp Feature: domain Description: YfmG Location: 4488865-4489699 bp Feature: domain Description: YfmG Location: 4488865-4489699 bp Feature: gene Location: 4966457-4966915 bp Feature: gene Location: 4967942-4969276 bp Feature: gene Location: 4969595-4971433 bp Gene: ltrA Feature: domain Description: RVT_N Location: 4969658-4969901 bp Feature: domain Description: RVT_N Location: 4969658-4969901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4969946-4970615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4969946-4970615 bp Feature: domain Description: GIIM Note: maturase Location: 4970714-4970927 bp Feature: domain Description: GIIM Note: maturase Location: 4970714-497092 7 bp Feature: domain Description: McrA Location: 4971050-4971320 bp Feature: domain Description: McrA Location: 4971050-497132 0 bp Feature: gene Location: 4972023-4972760 bp Feature: domain Description: ResIII Location: 4972218-4972719 bp Feature: domain Description: ResIII Location: 4972 2 18-4972 719 bp Feature: gene Location: 4973302-4974141 bp Feature: domain Description: HTH_Tnp_4 Location: 4973443-4973590 bp Feature: domain Description: HTH_Tnp_4 Location: 4973443-4973590 bp Feature: domain Description: DDE_Tnp_4 Location: 4973656-4974067 bp Feature: domain Description: DDE_Tnp_4 Location: 4973656-4974067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Uma2 (pfam05685), SAVED (pfam18145), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)
McrA (COG4058), DegQ (pfam08181), LptC_YrbK (TIGR04409), doc_partner (TIGR02609), RVT-DGRs, Avd_like (cd16376), CHAT (pfam12770), NB-ARC (pfam00931), YfmG (COG1262), ResIII (pfam04851)
HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359)