myRT

myRT report for GCA_009796285.1_ASM979628v1

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Seq: CP047020.1 Streptomyces sp. T44 chromosome (9735779 bp)
Overview 1 RT 1: 75996-79646 bp 2 RT 2: 130153-138164 bp 3 RT 3: 1660815-1665575 bp 4 RT 4: 7714665-7720734 bp 5 RT 5: 8256818-8262932 bp 6 RT 6: 9694772-9698600 bp Neighborhood of RT #1 [75996, 79646] RVT-GII GIIM Neighborhood of RT #2 [130153, 138433] DDE_5 COG3464 COG3464 RVT-GII GIIM PinE NB-ARC TPR_12 TPR_12 TPR_12 Neighborhood of RT #3 [1660815, 1665575] DUF4096 RVT_N RVT-GII GIIM HNH HepA Neighborhood of RT #4 [7714665, 7720748] Nterm_IS4 DDE_Tnp_1 RVT_N RVT-GII GIIM HTH_23 IS285 Neighborhood of RT #5 [8256818, 8263153] Y_phosphatase3 RVT-GII GIIM GalA SGNH_hydrolase_like_1 Neighborhood of RT #6 [9694772, 9698600] RVT-GII GIIM Feature: gene Location: 75996-76580 bp Feature: gene Location: 76670-77125 bp Feature: gene Location: 77353-78612 bp Ori: QHA02036.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77569-78229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77569-78229 bp Feature: domain Description: GIIM Note: maturase Location: 78313-78529 bp Feature: domain Description: GIIM Note: maturase Location: 7831 3-78529 bp Feature: gene Location: 79158-79412 bp Feature: gene Location: 79428-79646 bp Feature: gene Location: 130153-131562 bp Ori: QHA02071.1 Feature: domain Description: DDE_5 Location: 130216-130978 bp Feature: domain Description: DDE_5 Location: 1 3021 6-1 30978 bp Feature: gene Location: 132157-133749 bp Ori: QHA02072.1 Feature: domain Description: COG3464 Location: 132229-132904 bp Feature: domain Description: COG3464 Location: 1 32229-1 32904 bp Feature: domain Description: COG3464 Location: 133177-133741 bp Feature: domain Description: COG3464 Location: 1 331 77-1 33741 bp Feature: gene Location: 133965-135278 bp Ori: QHA02073.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134139-134829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 341 39-1 34829 bp Feature: domain Description: GIIM Note: maturase Location: 134898-135129 bp Feature: domain Description: GIIM Note: maturase Location: 1 34898-1 351 29 bp Feature: gene Location: 135471-136034 bp Feature: domain Description: PinE Location: 135474-136020 bp Feature: domain Description: PinE Location: 1 35474-1 36020 bp Feature: gene Location: 136229-138433 bp Ori: QHA09336.1 Feature: domain Description: NB-ARC Location: 136316-136826 bp Feature: domain Description: NB-ARC Location: 1 3631 6-1 36826 bp Feature: domain Description: TPR_12 Location: 137498-137684 bp Feature: domain Description: TPR_1 2 Location: 1 37498-1 37684 bp Feature: domain Description: TPR_12 Location: 137744-137939 bp Feature: domain Description: TPR_1 2 Location: 1 37744-1 37939 bp Feature: domain Description: TPR_12 Location: 137978-138164 bp Feature: domain Description: TPR_1 2 Location: 1 37978-1 381 64 bp Feature: gene Location: 1660815-1661160 bp Ori: QHA09480.1 Feature: domain Description: DUF4096 Location: 1660842-1661073 bp Feature: domain Description: DUF4096 Location: 1 660842-1 661 073 bp Feature: gene Location: 1660355-1660815 bp Feature: gene Location: 1661895-1663655 bp Ori: QHA09481.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1661928-1662174 bp Feature: domain Description: RVT_N Location: 1 661 928-1 6621 74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662225-1662885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 662225-1 662885 bp Feature: domain Description: GIIM Note: maturase Location: 1662939-1663170 bp Feature: domain Description: GIIM Note: maturase Location: 1 662939-1 6631 70 bp Feature: domain Description: HNH Note: nucleases Location: 1663488-1663596 bp Feature: domain Description: HNH Note: nucleases Location: 1 663488-1 663596 bp Feature: gene Location: 1663725-1664291 bp Feature: domain Description: HepA Location: 1663755-1664256 bp Feature: domain Description: HepA Location: 1 663755-1 664256 bp Feature: gene Location: 1664288-1665575 bp Feature: gene Location: 7714665-7715051 bp Feature: gene Location: 7715186-7716196 bp Ori: QHA07876.1 Feature: domain Description: Nterm_IS4 Location: 7715270-7715546 bp Feature: domain Description: Nterm_IS4 Location: 771 5270-771 5546 bp Feature: domain Description: DDE_Tnp_1 Location: 7715630-7716128 bp Feature: domain Description: DDE_Tnp_1 Location: 771 5630-771 61 28 bp Feature: gene Location: 7716817-7718562 bp Ori: QHA07877.1 Gene: ltrA Feature: domain Description: RVT_N Location: 7716886-7717123 bp Feature: domain Description: RVT_N Location: 771 6886-771 71 23 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7717183-7717840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771 71 83-771 7840 bp Feature: domain Description: GIIM Note: maturase Location: 7717894-7718125 bp Feature: domain Description: GIIM Note: maturase Location: 771 7894-771 81 25 bp Feature: gene Location: 7718767-7719387 bp Ori: QHA07878.1 Feature: domain Description: HTH_23 Location: 7719169-7719310 bp Feature: domain Description: HTH_23 Location: 771 91 69-771 931 0 bp Feature: gene Location: 7719453-7720748 bp Ori: QHA07879.1 Feature: domain Description: IS285 Location: 7719579-7720734 bp Feature: domain Description: IS285 Location: 771 9579-7720734 bp Feature: gene Location: 8256818-8256940 bp Feature: gene Location: 8256960-8257757 bp Ori: QHA08240.1 Feature: domain Description: Y_phosphatase3 Location: 8256993-8257752 bp Feature: domain Description: Y_phosphatase3 Location: 8256993-8257752 bp Feature: gene Location: 8257954-8259420 bp Ori: QHA08241.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8258290-8258986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8258290-8258986 bp Feature: domain Description: GIIM Note: maturase Location: 8259058-8259280 bp Feature: domain Description: GIIM Note: maturase Location: 8259058-8259280 bp Feature: gene Location: 8260101-8262176 bp Ori: QHA10063.1 Feature: domain Description: GalA Location: 8260155-8262126 bp Feature: domain Description: GalA Location: 82601 55-82621 26 bp Feature: gene Location: 8262368-8263153 bp Ori: QHA08242.1 Feature: domain Description: SGNH_hydrolase_like_1 Location: 8262380-8262932 bp Feature: domain Description: SGNH_hydrolase_like_1 Location: 8262380-8262932 bp Feature: gene Location: 9694772-9694972 bp Feature: gene Location: 9695008-9695238 bp Feature: gene Location: 9695809-9697068 bp Ori: QHA09293.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9696025-9696685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9696025-9696685 bp Feature: domain Description: GIIM Note: maturase Location: 9696769-9696985 bp Feature: domain Description: GIIM Note: maturase Location: 9696769-9696985 bp Feature: gene Location: 9697853-9698245 bp Feature: gene Location: 9698379-9698600 bp Sorry, 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Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_5 (pfam13546), COG3464 (Transposase ), PinE (COG1961), NB-ARC (pfam00931), TPR_12 (pfam13424), DUF4096 (pfam13340), RVT_N (pfam13655), HNH (pfam01844)
HepA (COG0553), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), HTH_23 (pfam13384), IS285 (COG3328), Y_phosphatase3 (pfam13350), GalA (COG3345), SGNH_hydrolase_like_1 (cd01832)