myRT

myRT report for GCA_009796765.1_ASM979676v1

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Seq: CP047023.1 Paraglaciecola sp. L3A3 chromosome, complete genome (5308776 bp)
Overview 1 RT 1: 497057-502624 bp 2 RT 2: 1752573-1758440 bp 3 RT 3: 1804227-1809465 bp 4 RT 4: 2951600-2955877 bp 5 RT 5: 3341560-3346892 bp 6 RT 6: 4369871-4390340 bp Neighborhood of RT #1 [497057, 502624] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM NACHT AAA_22 Neighborhood of RT #2 [1752573, 1758466] Zn_Tnp_IS91 Y2_Tnp RVT-GII GIIM COG3666 DDE_Tnp_1_6 Neighborhood of RT #3 [1804227, 1809848] RVT-GII GIIM RAYT Neighborhood of RT #4 [2951600, 2955972] RVT-GII GIIM RAYT HNH Neighborhood of RT #5 [3341560, 3346906] PRK15064 VF530 RVT-GII UPF0227 KOG4667 Neighborhood of RT #6 [4369871, 4390340] COG3666 DDE_Tnp_1_6 RVT-GII GIIM RVT-GII RVT-GII GIIM RVT-GII GIIM RVT-GII GIIM RVT-GII GIIM TPR_19 RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 497057-497407 bp Feature: domain Description: TnpB_IS66 Location: 497084-497369 bp Feature: domain Description: TnpB_IS66 Location: 497084-497369 bp Feature: gene Location: 497476-499002 bp Feature: domain Description: LZ_Tnp_IS66 Location: 497581-497779 bp Feature: domain Description: LZ_Tnp_IS66 Location: 497581 -497779 bp Feature: domain Description: zf-IS66 Location: 497806-497935 bp Feature: domain Description: zf-IS66 Location: 497806-497935 bp Feature: domain Description: DDE_Tnp_IS66 Location: 497995-498856 bp Feature: domain Description: DDE_Tnp_IS66 Location: 497995-498856 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 498877-498985 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 498877-498985 bp Feature: gene Location: 499064-500200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499166-499832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4991 66-499832 bp Feature: domain Description: GIIM Note: maturase Location: 499937-500117 bp Feature: domain Description: GIIM Note: maturase Location: 499937-5001 1 7 bp Feature: gene Location: 500368-502200 bp Feature: domain Description: NACHT Location: 500671-501106 bp Feature: domain Description: NACHT Location: 500671 -501 1 06 bp Feature: domain Description: AAA_22 Location: 501778-502072 bp Feature: domain Description: AAA_22 Location: 501 778-502072 bp Feature: gene Location: 502358-502624 bp Feature: gene Location: 1752573-1753691 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1752609-1752867 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 752609-1 752867 bp Feature: domain Description: Y2_Tnp Location: 1752993-1753521 bp Feature: domain Description: Y2_Tnp Location: 1 752993-1 753521 bp Feature: gene Location: 1754531-1754728 bp Feature: gene Location: 1754707-1755819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1754785-1755451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 754785-1 755451 bp Feature: domain Description: GIIM Note: maturase Location: 1755556-1755736 bp Feature: domain Description: GIIM Note: maturase Location: 1 755556-1 755736 bp Feature: gene Location: 1755948-1756691 bp Feature: gene Location: 1756901-1758466 bp Feature: domain Description: COG3666 Location: 1757030-1757357 bp Feature: domain Description: COG3666 Location: 1 757030-1 757357 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1758041-1758440 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 758041 -1 758440 bp Feature: gene Location: 1804227-1804481 bp Feature: gene Location: 1804907-1805575 bp Feature: gene Location: 1806215-1807504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1806470-1807136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 806470-1 8071 36 bp Feature: domain Description: GIIM Note: maturase Location: 1807241-1807421 bp Feature: domain Description: GIIM Note: maturase Location: 1 807241 -1 807421 bp Feature: gene Location: 1807774-1808442 bp Feature: gene Location: 1808868-1809848 bp Feature: domain Description: RAYT Location: 1808919-1809465 bp Feature: domain Description: RAYT Location: 1 80891 9-1 809465 bp Feature: gene Location: 2951600-2952028 bp Feature: gene Location: 2952222-2952434 bp Feature: gene Location: 2952639-2953988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2952918-2953551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295291 8-2953551 bp Feature: domain Description: GIIM Note: maturase Location: 2953596-2953809 bp Feature: domain Description: GIIM Note: maturase Location: 2953596-2953809 bp Feature: gene Location: 2954429-2955409 bp Feature: domain Description: RAYT Location: 2954480-2955026 bp Feature: domain Description: RAYT Location: 2954480-2955026 bp Feature: gene Location: 2955469-2955972 bp Feature: domain Description: HNH Note: nucleases Location: 2955745-2955877 bp Feature: domain Description: HNH Note: nucleases Location: 2955745-2955877 bp Feature: gene Location: 3341560-3343149 bp Feature: domain Description: PRK15064 Location: 3341563-3343144 bp Feature: domain Description: PRK1 5064 Location: 3341 563-33431 44 bp Feature: gene Location: 3343359-3343652 bp Feature: domain Description: VF530 Location: 3343380-3343563 bp Feature: domain Description: VF530 Location: 3343380-3343563 bp Feature: gene Location: 3344859-3345809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3345114-3345780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33451 1 4-3345780 bp Feature: gene Location: 3346193-3346333 bp Feature: gene Location: 3346406-3346906 bp Feature: domain Description: UPF0227 Location: 3346424-3346694 bp Feature: domain Description: UPF0227 Location: 3346424-3346694 bp Feature: domain Description: KOG4667 Location: 3346721-3346892 bp Feature: domain Description: KOG4667 Location: 3346721 -3346892 bp Feature: gene Location: 4369871-4371436 bp Feature: domain Description: COG3666 Location: 4370000-4370327 bp Feature: domain Description: COG3666 Location: 4370000-4370327 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4371011-4371410 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 4371 01 1 -4371 41 0 bp Feature: gene Location: 4371653-4372093 bp Feature: gene Location: 4372222-4372830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4372246-4372462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4372246-4372462 bp Feature: domain Description: GIIM Note: maturase Location: 4372567-4372750 bp Feature: domain Description: GIIM Note: maturase Location: 4372567-4372750 bp Feature: gene Location: 4372854-4373510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4373109-4373460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43731 09-4373460 bp Feature: gene Location: 4373893-4374033 bp Feature: gene Location: 4374200-4374529 bp Feature: gene Location: 4375506-4375952 bp Feature: gene Location: 4376032-4376244 bp Feature: gene Location: 4376449-4377798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4376728-4377361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4376728-4377361 bp Feature: domain Description: GIIM Note: maturase Location: 4377406-4377619 bp Feature: domain Description: GIIM Note: maturase Location: 4377406-437761 9 bp Feature: gene Location: 4377878-4378327 bp Feature: gene Location: 4378461-4379750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4378716-4379382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437871 6-4379382 bp Feature: domain Description: GIIM Note: maturase Location: 4379487-4379667 bp Feature: domain Description: GIIM Note: maturase Location: 4379487-4379667 bp Feature: gene Location: 4380135-4380275 bp Feature: gene Location: 4380388-4380795 bp Feature: gene Location: 4380993-4381205 bp Feature: gene Location: 4381410-4382759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4381689-4382322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4381 689-4382322 bp Feature: domain Description: GIIM Note: maturase Location: 4382367-4382580 bp Feature: domain Description: GIIM Note: maturase Location: 4382367-4382580 bp Feature: gene Location: 4382828-4383094 bp Feature: gene Location: 4383185-4384474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4383440-4384106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4383440-43841 06 bp Feature: domain Description: GIIM Note: maturase Location: 4384211-4384391 bp Feature: domain Description: GIIM Note: maturase Location: 438421 1 -4384391 bp Feature: gene Location: 4384859-4384999 bp Feature: gene Location: 4385112-4385480 bp Feature: domain Description: TPR_19 Location: 4385265-4385424 bp Feature: domain Description: TPR_1 9 Location: 4385265-4385424 bp Feature: gene Location: 4385597-4385956 bp Feature: gene Location: 4386047-4387336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4386302-4386968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4386302-4386968 bp Feature: domain Description: GIIM Note: maturase Location: 4387073-4387253 bp Feature: domain Description: GIIM Note: maturase Location: 4387073-4387253 bp Feature: gene Location: 4387721-4387861 bp Feature: gene Location: 4388018-4389307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4388273-4388939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4388273-4388939 bp Feature: domain Description: GIIM Note: maturase Location: 4389044-4389224 bp Feature: domain Description: GIIM Note: maturase Location: 4389044-4389224 bp Feature: gene Location: 4389692-4389832 bp Feature: gene Location: 4389948-4390340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), NACHT (pfam05729), AAA_22 (pfam13401), Zn_Tnp_IS91 (pfam14319)
Y2_Tnp (pfam04986), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RAYT (COG1943), HNH (pfam01844), PRK15064 (ABC transporter ATP-binding protein; Provisional), VF530 (pfam09905), UPF0227 (pfam05728), KOG4667 (KOG4667, Predicted esterase ), TPR_19 (pfam14559)