myRT

myRT report for GCA_009796865.1_ASM979686v1

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Seq: CP047028.1 Formosa sp. L2A11 chromosome, complete genome (3783741 bp)
Overview 1 RT 1: 336753-340110 bp 2 RT 2: 345770-349940 bp 3 RT 3: 352815-356124 bp 4 RT 4: 2412338-2423571 bp 5 RT 5: 2430812-2437948 bp 6 RT 6: 3614139-3618516 bp Neighborhood of RT #1 [336753, 340110] Pentapeptide_4 RVT-GII Neighborhood of RT #2 [345770, 349993] INT_IntI_C RVT-GII GIIM DUF1963 Neighborhood of RT #3 [352815, 356225] INT_IntI_C group_II_RT_mat RVT-GII InsE Neighborhood of RT #4 [2412338, 2423591] Bcp MmsB RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp Y2_Tnp RVT-GII RVT-GII GIIM OafA PHA02517 Neighborhood of RT #5 [2430812, 2438337] COG4447 COG4447 COG4447 COG4447 RVT-GII GIIM YbjD YbjD Neighborhood of RT #6 [3614139, 3618516] RmuC RVT-UG2 Feature: gene Location: 336753-337469 bp Feature: domain Description: Pentapeptide_4 Location: 336840-337053 bp Feature: domain Description: Pentapeptide_4 Location: 336840-337053 bp Feature: gene Location: 337549-337782 bp Feature: gene Location: 337961-338824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338156-338771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3381 56-338771 bp Feature: gene Location: 338829-339035 bp Feature: gene Location: 339472-340110 bp Feature: gene Location: 345770-346123 bp Feature: domain Description: INT_IntI_C Location: 345902-346091 bp Feature: domain Description: INT_IntI_C Location: 345902-346091 bp Feature: gene Location: 346605-347156 bp Feature: gene Location: 347261-348541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347456-348071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347456-348071 bp Feature: domain Description: GIIM Note: maturase Location: 348143-348356 bp Feature: domain Description: GIIM Note: maturase Location: 3481 43-348356 bp Feature: gene Location: 348546-348752 bp Feature: gene Location: 349190-349993 bp Feature: domain Description: DUF1963 Location: 349373-349940 bp Feature: domain Description: DUF1 963 Location: 349373-349940 bp Feature: gene Location: 352815-353579 bp Feature: domain Description: INT_IntI_C Location: 353025-353526 bp Feature: domain Description: INT_IntI_C Location: 353025-353526 bp Feature: gene Location: 353911-354450 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 353914-354241 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 35391 4-354241 bp Feature: gene Location: 354521-355189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354716-355178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35471 6-3551 78 bp Feature: gene Location: 355194-355400 bp Feature: gene Location: 355860-356225 bp Feature: domain Description: InsE Location: 355884-356124 bp Feature: domain Description: InsE Location: 355884-3561 24 bp Feature: gene Location: 2412338-2412904 bp Feature: domain Description: Bcp Location: 2412401-2412899 bp Feature: domain Description: Bcp Location: 241 2401 -241 2899 bp Feature: gene Location: 2413450-2414376 bp Feature: domain Description: MmsB Location: 2413510-2414344 bp Feature: domain Description: MmsB Location: 241 351 0-241 4344 bp Feature: gene Location: 2415604-2416347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2415799-2416336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 5799-241 6336 bp Feature: gene Location: 2416456-2416635 bp Feature: domain Description: GIIM Note: maturase Location: 2416480-2416633 bp Feature: domain Description: GIIM Note: maturase Location: 241 6480-241 6633 bp Feature: gene Location: 2416644-2416877 bp Feature: gene Location: 2417968-2418501 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2418028-2418262 bp Feature: domain Description: Zn_Tnp_IS91 Location: 241 8028-241 8262 bp Feature: domain Description: Y2_Tnp Location: 2418388-2418481 bp Feature: domain Description: Y2_Tnp Location: 241 8388-241 8481 bp Feature: gene Location: 2418530-2418889 bp Feature: domain Description: Y2_Tnp Location: 2418542-2418866 bp Feature: domain Description: Y2_Tnp Location: 241 8542-241 8866 bp Feature: gene Location: 2420536-2420934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2420731-2420881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2420731 -2420881 bp Feature: gene Location: 2420942-2421814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2420948-2421344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2420948-2421 344 bp Feature: domain Description: GIIM Note: maturase Location: 2421416-2421629 bp Feature: domain Description: GIIM Note: maturase Location: 2421 41 6-2421 629 bp Feature: gene Location: 2422157-2422927 bp Feature: domain Description: OafA Location: 2422163-2422865 bp Feature: domain Description: OafA Location: 24221 63-2422865 bp Feature: gene Location: 2423013-2423591 bp Feature: domain Description: PHA02517 Location: 2423040-2423571 bp Feature: domain Description: PHA0251 7 Location: 2423040-2423571 bp Feature: gene Location: 2430812-2432449 bp Feature: domain Description: COG4447 Location: 2430830-2431142 bp Feature: domain Description: COG4447 Location: 2430830-2431 1 42 bp Feature: domain Description: COG4447 Location: 2431163-2431505 bp Feature: domain Description: COG4447 Location: 2431 1 63-2431 505 bp Feature: domain Description: COG4447 Location: 2431610-2431901 bp Feature: domain Description: COG4447 Location: 2431 61 0-2431 901 bp Feature: domain Description: COG4447 Location: 2432066-2432183 bp Feature: domain Description: COG4447 Location: 2432066-24321 83 bp Feature: gene Location: 2433610-2434464 bp Feature: gene Location: 2435171-2435740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2435366-2435603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2435366-2435603 bp Feature: gene Location: 2435975-2436445 bp Feature: domain Description: GIIM Note: maturase Location: 2436047-2436260 bp Feature: domain Description: GIIM Note: maturase Location: 2436047-2436260 bp Feature: gene Location: 2436559-2438337 bp Feature: domain Description: YbjD Location: 2436574-2436742 bp Feature: domain Description: YbjD Location: 2436574-2436742 bp Feature: domain Description: YbjD Location: 2437366-2437948 bp Feature: domain Description: YbjD Location: 2437366-2437948 bp Feature: gene Location: 3614139-3614366 bp Feature: gene Location: 3614418-3615809 bp Feature: domain Description: RmuC Location: 3614874-3615762 bp Feature: domain Description: RmuC Location: 361 4874-361 5762 bp Feature: gene Location: 3615872-3617383 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3616112-3616988 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 361 61 1 2-361 6988 bp Feature: gene Location: 3617515-3617685 bp Feature: gene Location: 3617851-3618516 bp Sorry, your browser 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Associated domains:myRT Pentapeptide_4 (pfam13599), RVT-GII, INT_IntI_C (cd01193), GIIM (pfam08388), DUF1963 (pfam09234), group_II_RT_mat (TIGR04416), InsE (COG2963), Bcp (COG1225), MmsB (COG2084), Zn_Tnp_IS91 (pfam14319)
Y2_Tnp (pfam04986), OafA (COG1835), PHA02517 (putative transposase OrfB; Reviewed), COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), YbjD (COG3593), RmuC (pfam02646), RVT-UG2